Re: [base] GenePix Alternitives?

Hi Everybody!! I have a problem (again!) with a .gpr file. I have configure  a RAW data importer to parser GenePix .gpr file. The plugin configuration is: Block \Block\ Column \Column\

[base] Problems with RawDataImporter

Hi Pablo, This is the errors I found: Data header regexp: You should write Block\tColumn.* (this will match any line starting with "BlockColumn") or Block\tColumn\tID (this will math a line "Block ColumnID". Header regexp: Should something like "?(.+)=(.*)"? so the header lines are

Re: [base] Problems with RawDataImporter

Thanks for the quickly reply!! The configuration works!!. I dont understand why my configuration, with all columns specify, give me that error but anyway... THANKS again Johan!! On Wed, 02 Aug 2006 12:00:51 +0200, Johan Enell wrote > Hi Pablo, > > This is the errors I found: > > Data header

[base] Batch import

Dear list We are setting up BASE2 for storage of our microarray data. We have finally managed to create plug-ins for reporters, arrays and raw data and we would like now to have a way in import in batch our existing experiments. I have been checking the base mailing list and found some references

Re: [base] Batch import

Ana Conesa wrote: > Dear list > > We are setting up BASE2 for storage of our microarray data. We have > finally managed to create plug-ins for reporters, arrays and raw data > and we would like now to have a way in import in batch our existing > experiments. I have been checking the base mailin

[base] RawData import, error when reporterID=null

Hi, I have moved on in importing raw data sets and I came across the following problems. Since we are using costum cDNA arrays when have some array desings whith feature positions where no DNA has been spotted. This means that the feature gets the value null when creating the corresponding array d

Re: [base] RawData import, error when reporterID=null

Pablo Lemos Ochandio wrote: > Hi, > > I have moved on in importing raw data sets and I came across the following > problems. Since we are using costum cDNA arrays when have some array desings > whith feature positions where no DNA has been spotted. This means that the > feature gets the va

Re: [base] RawData import, error when reporterID=null

Hi /Nicklas!! Well let me i explain my problem. I have a lot of grp files. I try to upload to BASE2. These files have a cDNAs data, reference types and empty slots. GenePix extract information all of them (Mean, Median, SD, ratios etc.). For empty slots, GenePix give me the data too but when i

Re: [base] RawData import, error when reporterID=null

Pablo Lemos Ochandio wrote: > Hi /Nicklas!! > > Well let me i explain my problem. > > I have a lot of grp files. I try to upload to BASE2. These files have a cDNAs > data, reference types and empty slots. GenePix extract information all of them > (Mean, Median, SD, ratios etc.). For empty slots,