Re: [base] merged data

Julie Naito wrote: > Hello there. > Do you need to create two separate result file formats for 2 separate > Imagene merged raw data sets if 1 set includes a dye swap? Currently there is no plugin that can import Imagene data so the question is hypothetical (see http://base.thep.lu.se/ticket/450)

Re: [base] NullPointerException when creating plugin configuration

Marie Mooney wrote: > I'm trying to import some genepix raw data files (.gpr) with the raw data > importer. In configuring the plugin, I define the fields and test the file > parsing, but it doesn't recognize the data header line the way I expressed > it. When I select the option to make the 'unkno

Re: [base] Number format excecption

Reha Yildirimman wrote: > Hello, > > The import is always aborted when the plug-in finds a value with "e" > definition (e+00, e-05 etc). The importer currently doesn't support such values. 'E' is not a digit or decimal separator. That is why it is complaining. > The strange thing is when I tes

Re: [base] ClassCastException while trying to create spot images

Chad Matsalla wrote: > > > I'm going to analyze this array and try to put it into base as single-image > tiffs but I need to add the Yeast reporters from the galfile. Whew! Actually, all you need is the X and Y coordinates from the raw data file. You don't need the reporters or anything else.

Re: [base] Number format excecption

Nicklas Nordborg wrote: > Reha Yildirimman wrote: >> Hello, >> >> The import is always aborted when the plug-in finds a value with "e" >> definition (e+00, e-05 etc). > > The importer currently doesn't support such values. 'E' is not a digit > or decimal separator. That is why it is complaining.

Re: [base] NullPointerException when creating plugin configuration

Here's the step by step path: 1. Go to Administrate -> Plugins -> Configurations 2. Click on the name of my genepix configuration with Plugin definition=raw data importer 3. Click 'Save and Configure' 4. Raw data type selection is GenePix, click next 5. I have previously entered in the regular ex

Re: [base] NullPointerException when creating plugin configuration

Marie Mooney wrote: > Here's the step by step path: > > 1. Go to Administrate -> Plugins -> Configurations > 2. Click on the name of my genepix configuration with Plugin > definition=raw data importer > 3. Click 'Save and Configure' > 4. Raw data type selection is GenePix, click next > 5. I have p

Re: [base] NullPointerException when creating plugin configuration

> Marie Mooney wrote: >> Here's the step by step path: >> >> 1. Go to Administrate -> Plugins -> Configurations >> 2. Click on the name of my genepix configuration with Plugin >> definition=raw data importer >> 3. Click 'Save and Configure' >> 4. Raw data type selection is GenePix, click next >> 5

Re: [base] NullPointerException when creating plugin configuration

> >> Marie Mooney wrote: >>> Here's the step by step path: >>> >>> 1. Go to Administrate -> Plugins -> Configurations >>> 2. Click on the name of my genepix configuration with Plugin >>> definition=raw data importer >>> 3. Click 'Save and Configure' >>> 4. Raw data type selection is GenePix, click

Re: [base] NullPointerException when creating plugin configuration

Marie Mooney wrote: >> Please submit the entire stack trace. I think (hope) there is some >> important information later on. > > > Here is the complete stack trace: Great. I think the following ticket is related. http://base.thep.lu.se/ticket/438 There is a bug in some MySQL version that gives

Re: [base] merged data

Is this the case with BASE version 1.2.16? > > > Hello there. >> Do you need to create two separate result file formats for 2 separate >> Imagene merged raw data sets if 1 set includes a dye swap? > >Currently there is no plugin that can import Imagene data so the >question is hypothetical (see