[base] recompiling affymetrix plugin

2007-09-11 Thread Sergio Contrino
dear base, i am trying to compile (with the distributed make) a slightly modified (Plier.java) affy plugin (v 0.7) and i get a long (69) list of errors, mostly Syntax error, annotations are only available if source level is 5.0 any suggestion? apologies if in the wrong list thanks sergio

Re: [base] Base1PluginExecuter parameter xml

2007-09-11 Thread Johan Enell
Hj Bob, The clustering from Base1 will not work in Base2. Or more precisely, you will be able to run the plugin but you wont be able to se the result. The visualization page in Base1 was a specific php page for that plugin and we didn't want a solution like that in Base2. When you

Re: [base] Error uploading CDF file

2007-09-11 Thread jesse paquette
Hi Nicklas, On the Files and Directories page, the directory hierarchy on the left side still shows (can I attach a screenshot?): Root - home - jesse.paquette - template Is this appropriate, given that the userfiles variable in the base.config file is set to: userfiles = C:/Program

Re: [base] Error uploading CDF file

2007-09-11 Thread jesse paquette
Is this appropriate, given that the userfiles variable in the base.config file is set to: userfiles = C:/Program Files/BASE/upload/base-2.4.0 I think you should remove the starting and ending the path. It is not allowed to have file or directory names containing . Hey, that was

Re: [base] Base1PluginExecuter parameter xml

2007-09-11 Thread Jari Häkkinen
Why not use the clustering in the MeV plugin shipped with BASE? Jari Johan Enell wrote: Hj Bob, The clustering from Base1 will not work in Base2. Or more precisely, you will be able to run the plugin but you wont be able to se the result. The visualization page in Base1 was a