[base] how can i interact with the spot creator plugin from outside the system

Greetings! I'm trying to understand the genepix tiff spotfinding problem I described earlier. I want to interact with the spotfinder plugin with my own program but I can't create files. I have this: images/ |-- 13298608_532-uncompressed.tif `-- 13298608_635-uncompressed.tif I want to do

[base] genepix 6.0/6.1, multi-image tif-s, spot finding,

will modify our local copy to do this without prompting. Thanks for your efforts! Chad Matsalla Plant Biotechnology Institute, National Research Council of Canada Saskatoon, Saskatchewan, Canada - This SF.net email is sponsored

[base] genepix 6.0/6.1, multi-image tif-s, spot finding,

provide a hint as to how to open it? Thanks! Chad Matsalla Plant Biotechnology Institute, National Research Council of Canada Saskatoon, Saskatchewan, Canada [1] I can't do that with these images - their content is proprietary. [2] chad$ file 20th.zip 20th.zip: Zip archive data, at least v2.0

[base] GROUP clause error

`.`D320RawParents` `rawmap` WHERE `rawmap`.`cube` = 3 GROUP BY `rawmap`.`column`, `rawmap`.`position` ORDER BY mapCount DESC Hm. For mysql4, anyway. Any ideas on how this can be repaired for people who are bound to mysql4? Chad Matsalla

[base] base-2.3.2 and exporting basefiles - the last line of the bioassay set is absent

) but select 'Normal Basefile'. The last row I see exported has the position 31199. Row 31200 is absent. No blank line is at the end of this file. Thank you for your help, Chad Matsalla Plant Biotechnology Institute Saskatoon, Saskatchewan

[base] can't reconfigure a base1 plugin

in the box by default but was only visible when you clicked the 'File' parameter on the left. So it seems there is no problem. Other users might need to watch out for that phenomenon, though. Yippee! Chad Matsalla - This SF.net

[base] problems with my trashcan

Nicklas wrote: Are you logged in as the user that is the owner of the experiment? I am logged in as root. Shouldn't root be able to delete anything? Chad Matsalla - This SF.net email is sponsored by: Splunk Inc. Still

[base] Data cube has already been committed

problems. Is there some sort of database validator that I can run to test if my databases are consistent? They are large - 10G. Chad Matsalla - This SF.net email is sponsored by: Splunk Inc. Still grepping through log files to find

[base] can you give spot images a css class?

td.cell img { width: 30px; } and it works but it feels ... wrong. I'd prefer .spotimage { width: 30px; } Thanks, Chad Matsalla Plant Biotechnology Institute Saskatoon, Saskatchewan, Canada -- Create and Deploy Rich