Re: [Bioc-devel] import except on Window Machine

2016-04-11 Thread Michael Lawrence
t;>>>> syntax look like this: >>>>> >>>>> import(S4Vectors, except=c(fold, values)) >>>>> import(IRanges, except=values) >>>> >>>> >>>> Unrelated note: should be no need to exclude values from IRan

Re: [Bioc-devel] import except on Window Machine

2016-04-11 Thread Hervé Pagès
e" <lawrence.mich...@gene.com>, "bioc-devel" <bioc-devel@r-project.org> Sent: Monday, April 11, 2016 10:21:42 AM Subject: Re: [Bioc-devel] import except on Window Machine # ##BUILT & RELOAD ==> R CMD INSTALL --no-multiarch --with-keep.source bioCance

Re: [Bioc-devel] import except on Window Machine

2016-04-11 Thread Zhu, Lihua (Julie)
jects to be excepted are not quoted? >>>> >>>> Dan >>>> >>>> >>>> >>>> - Original Message - >>>>> From: "Karim Mezhoud" <kmezh...@gmail.com> >>>>> To: "Dan Tenenbaum&q

Re: [Bioc-devel] import except on Window Machine

2016-04-11 Thread Michael Lawrence
re not quoted? >>> >>> Dan >>> >>> >>> >>> - Original Message - >>>> From: "Karim Mezhoud" <kmezh...@gmail.com> >>>> To: "Dan Tenenbaum" <dtene...@fredhutch.org> >

Re: [Bioc-devel] import except on Window Machine

2016-04-11 Thread Zhu, Lihua (Julie)
rg> >>> Cc: "Lihua Zhu" <julie@umassmed.edu>, "Michael Lawrence" >>><lawrence.mich...@gene.com>, "bioc-devel" >>> <bioc-devel@r-project.org> >>> Sent: Monday, April 11, 2016 10:21:42 AM >>> Subje

Re: [Bioc-devel] import except on Window Machine

2016-04-11 Thread Michael Lawrence
gt;> Cc: "Lihua Zhu" <julie@umassmed.edu>, "Michael Lawrence" >> <lawrence.mich...@gene.com>, "bioc-devel" >> <bioc-devel@r-project.org> >> Sent: Monday, April 11, 2016 10:21:42 AM >> Subject: Re: [Bioc-devel] import exce

Re: [Bioc-devel] import except on Window Machine

2016-04-11 Thread Dan Tenenbaum
hutch.org> > Cc: "Lihua Zhu" <julie@umassmed.edu>, "Michael Lawrence" > <lawrence.mich...@gene.com>, "bioc-devel" > <bioc-devel@r-project.org> > Sent: Monday, April 11, 2016 10:21:42 AM > Subject: Re: [Bioc-devel] import except on

Re: [Bioc-devel] import except on Window Machine

2016-04-11 Thread Karim Mezhoud
quot; <kmezh...@gmail.com> > > To: "Dan Tenenbaum" <dtene...@fredhutch.org> > > Cc: "Lihua Zhu" <julie@umassmed.edu>, "Michael Lawrence" < > lawrence.mich...@gene.com>, "bioc-devel" > > <bioc-devel@r-project.org> >

Re: [Bioc-devel] import except on Window Machine

2016-04-11 Thread Zhu, Lihua (Julie)
...@gene.com>>, "bioc-devel@r-project.org<mailto:bioc-devel@r-project.org>" <bioc-devel@r-project.org<mailto:bioc-devel@r-project.org>> Subject: Re: [Bioc-devel] import except on Window Machine Dear Julie, Are you using roxigen2 to edit NAMESPACE file? Are you usin

Re: [Bioc-devel] import except on Window Machine

2016-04-11 Thread Dan Tenenbaum
u" <julie@umassmed.edu>, "Michael Lawrence" > <lawrence.mich...@gene.com>, "bioc-devel" > <bioc-devel@r-project.org> > Sent: Monday, April 11, 2016 10:08:15 AM > Subject: Re: [Bioc-devel] import except on Window Machine >> sessionInfo(

Re: [Bioc-devel] import except on Window Machine

2016-04-11 Thread Karim Mezhoud
quot;Lihua Zhu" <julie@umassmed.edu> > > Cc: "Dan Tenenbaum" <dtene...@fredhutch.org>, "Michael Lawrence" < > lawrence.mich...@gene.com>, "bioc-devel" > > <bioc-devel@r-project.org> > > Sent: Monday, April 11, 201

Re: [Bioc-devel] import except on Window Machine

2016-04-11 Thread Dan Tenenbaum
d.edu> > Cc: "Dan Tenenbaum" <dtene...@fredhutch.org>, "Michael Lawrence" > <lawrence.mich...@gene.com>, "bioc-devel" > <bioc-devel@r-project.org> > Sent: Monday, April 11, 2016 10:03:52 AM > Subject: Re: [Bioc-devel] import except on

Re: [Bioc-devel] import except on Window Machine

2016-04-11 Thread Karim Mezhoud
massmed.edu> > >> To: "bioc-devel" <bioc-devel@r-project.org> > >> Cc: "Michael Lawrence" <lawrence.mich...@gene.com> > >> Sent: Monday, April 11, 2016 9:18:31 AM > >> Subject: [Bioc-devel] import except on Window Machine &g

Re: [Bioc-devel] import except on Window Machine

2016-04-11 Thread Zhu, Lihua (Julie)
- >> From: "Lihua Zhu" <julie@umassmed.edu> >> To: "bioc-devel" <bioc-devel@r-project.org> >> Cc: "Michael Lawrence" <lawrence.mich...@gene.com> >> Sent: Monday, April 11, 2016 9:18:31 AM >> Subject: [B

Re: [Bioc-devel] import except on Window Machine

2016-04-11 Thread Dan Tenenbaum
gt; Cc: "Michael Lawrence" <lawrence.mich...@gene.com> > Sent: Monday, April 11, 2016 9:18:31 AM > Subject: [Bioc-devel] import except on Window Machine > Michael, > > For some reason, adding except clause in import in the NAMESPACE file gives >

[Bioc-devel] import except on Window Machine

2016-04-11 Thread Zhu, Lihua (Julie)
Michael, For some reason, adding except clause in import in the NAMESPACE file gives error on window server, although it runs fine on Linux and Mac OS X. http://bioconductor.org/checkResults/devel/bioc-LATEST/CRISPRseek/moscato2-buildsrc.html Here is the line that gives error.