Re: [Bioc-devel] new package IGV needs web browsers on the build machines to pass build & check

Many thanks, Vince! I will fix the printf and markdown errors. With release date now not far off, I propose (Bioc policymakers please weigh in if this is inadequate) to - remove web browser communication from vignette, examples and unit tests - evaluate stubs and/or "mocks" for possible use in

Re: [Bioc-devel] new package IGV needs web browsers on the build machines to pass build & check

Thanks Paul. Package works. Browser visualizations look really nice. I tried to run your unit tests and they use a function called "printf". Setting printf = sprintf allowed the tests to all run to completion. The following vignette chunk is problematic ... maybe you meant eval=FALSE,

Re: [Bioc-devel] new package IGV needs web browsers on the build machines to pass build & check

Hi Vince, My dumb mistake, sorry. Now fixed, version 0.99.9, https://github.com/paul-shannon/IGV I’m looking forward to hearing your suggestions. - Paul > On Apr 9, 2018, at 4:49 PM, Vincent Carey wrote: > > Hi Paul -- I am trying to build your vignette but

Re: [Bioc-devel] new package IGV needs web browsers on the build machines to pass build & check

Hi Paul -- I am trying to build your vignette but it has load("~/s/work/priceLab/AD/tbl.gwas.level_1.RData") I think it should be possible to get your package through check, but I would like to get the vignette built and check out the tests before commenting further. On Mon, Apr 9, 2018 at

[Bioc-devel] new package IGV needs web browsers on the build machines to pass build & check

> "Once your package builds and checks without errors or (avoidable) warnings, > a Bioconductor team member will provide a technical review of your package. > Other Bioconductor developers and users with domain expertise are encouraged > to provide additional community commentary. Reviewers