Hi,
Sounds good- that's something I haven't run. I ran R CMD check after adding
the .Rcheck file with BioC flags but this sounds different.
But will look up how to run this.
Thanks, Herve.
Shraddha
On Fri, Jun 14, 2019 at 8:02 PM Pages, Herve wrote:
> Sounds good. Also don't forget to run 'R
Sounds good. Also don't forget to run 'R CMD BiocCheck' on the source
tarball of the package. Right now it reports a lot of problems:
hpages@spectre:~$ R CMD BiocCheck netDx_0.99.0.tar.gz
...
Summary:
ERROR count: 3
WARNING count: 7
NOTE count: 12
Once everything is ready,
Hi,
Ok thank you.
I should probably comment out some time-consuming steps in the vignettes
and just include the output in the companion data set, read those in.
Thanks, will do that before next push to master.
Best S
On Fri, Jun 14, 2019 at 7:37 PM Pages, Herve wrote:
> On 6/14/19 15:58,
On 6/14/19 15:58, Shraddha Pai wrote:
> Hi,
>
> Thanks Herve. I have actually spent weeks making sure my packages passed
> check and build following guidelines. So I am actually doing my best and
> your snarky remark is not appreciated.
OK maybe. But please note that our guidelines say that
Hi,
Thanks Herve. I have actually spent weeks making sure my packages passed
check and build following guidelines. So I am actually doing my best and
your snarky remark is not appreciated.
Then at the very end I expanded the DESCRIPTION file by putting in line
breaks in the "description" field,
Hi,
From the Linux command line:
git clone https://github.com/BaderLab/netDx
R CMD INSTALL netDx
* installing to library ‘/home/hpages/R/R-3.6.r76454/library’
Error: error reading file '/home/hpages/sandbox/netDx/DESCRIPTION'
R CMD build netDx
* checking for file
Hello BioC dev community,
I just submitted a package to BioC.
1) The automatic build gave it an "ABNORMAL" status with the following
error " Accessing git_info complete. get_dcf_info failed; could not open."
https://github.com/Bioconductor/Contributions/issues/1149
I've Googled a bit and cannot
Hi,
It seems like the email is configured correctly on BiocCredentials app. It is
because the account is not activated it doesn't work. You'd have to first
activate your account before moving forward with setting a password.
I've added your GitHub credentials to the account.
Best,
Nitesh
Hi,
I'd like to update my package Clonality
https://bioconductor.org/packages/release/bioc/html/Clonality.html
I used to do it through svn but as I understand it's not possible now.
I can't connect it to my git page with updated package
https://github.com/IOstrovnaya/Clonality
When I enter
Thank you. We will investigate further and let you know when we have a solution
on our end.
Lori Shepherd
Bioconductor Core Team
Roswell Park Cancer Institute
Department of Biostatistics & Bioinformatics
Elm & Carlton Streets
Buffalo, New York 14263
From:
It looks like for arch'x64', there is no package org.Hs.eg.db.
Following is the whole error message:
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
trackViewer-package 22.44 0.07 24.88
viewTracks 13.97
It is for a long time. Since last development version (BioC 3.9).
Jianhong.
From: "Shepherd, Lori"
Date: Friday, June 14, 2019 at 9:29 AM
To: "Jianhong Ou, Ph.D." , Michael Lawrence via
Bioc-devel
Subject: Re: CHECK ERROR in tokay1 for BioC 3.10
How long as this ERROR occurred?
I just went
How long as this ERROR occurred?
I just went onto tokay1 and was able to run library("org.Hs.eg.db") with no
issues. Let's wait and see if it clears up on todays build report. If not we
will investigate further.
Lori Shepherd
Bioconductor Core Team
Roswell Park Cancer Institute
We have recently repurposed the scRNAseq package to serve as a general
location for any publicly available single-cell count data. The aim of
this package is to provide convenient functions that directly yield
nicely formatted SingleCellExperiment objects containing count matrices
and relevant
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