[Bioc-devel] Large file problem in git

2019-09-30 Thread Cuklina Jelena
Dear all, I have a WARNING, caused by the file larger than 5 MB: From the file name, .Rproj.user/4185876F/ctx/ctx-17050/environment .git/objects/pack/pack-88dfd7e4c8ad695717e8d77594e9c340fabcc39f.pack it looks like it’s an R project environment file which was out of gitignore at some

Re: [Bioc-devel] hook declined

2019-10-15 Thread Cuklina Jelena
://stat.ethz.ch/pipermail/bioc-devel/2019-September/015609.html Lori Shepherd Bioconductor Core Team Roswell Park Comprehensive Cancer Center Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263 ____ From: Cuklina Jelena Sent:

Re: [Bioc-devel] package has been cleaned for large data files and needs to be reset.

2019-10-18 Thread Cuklina Jelena
Comprehensive Cancer Center Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263 ____ From: Cuklina Jelena Sent: Thursday, October 17, 2019 6:26 AM To: Shepherd, Lori ; Michael Lawrence via Bioc-devel Subject: Re: [Bioc-devel]

Re: [Bioc-devel] package has been cleaned for large data files and needs to be reset.

2019-10-16 Thread Cuklina Jelena
Dear Bioconductor team, May I ask on the process of the package reset? How do I know the Bioconductor upstream of my project has been updated/failed? Thank you very much for your work. Best regards, Jelena Čuklina. On 14 Oct 2019, 18:49 +0200, Jelena Chuklina , wrote: Dear Bioconductor team,

[Bioc-devel] hook declined

2019-10-15 Thread Cuklina Jelena
Dear Bioconductor team, my submission to Release_3_10 branch is declined. Could you please tell why is that? I can’t submit to master as I need repo reset due to large file cleaning and history re-writing, is this issue related? Or is it the deadline missed? Error message: ! [remote rejected]

Re: [Bioc-devel] package has been cleaned for large data files and needs to be reset.

2019-10-17 Thread Cuklina Jelena
uctor Core Team Roswell Park Comprehensive Cancer Center Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263 From: Bioc-devel on behalf of Shepherd, Lori Sent: Wednesday, October 16, 2019 7:19 AM To: Cuklin

[Bioc-devel] Big repo problem & consequences: all commits duplicated

2019-10-11 Thread Cuklina Jelena
Dear all, while trying to fix the WARNING of “too big files” for my repo proBatch, I used BFG, and ALL my commits (or at least many-many dozens of them) are duplicated (some up to 5-10 copies). I guess this is because of my pull-push efforts, which I naively “resolved” with git pull origin