Re: [Bioc-devel] right version "masked" by wrong version - not sure what "masked means"
Generally this means that there are multiple locations where the package is installed - as determined by .libPaths() - The single package builder specifies a package specific place to install packages that are not installed by the daily builder C:/Users/pkgbuild/packagebuilder/workers/jobs/704/R-libs The package that was installled in this directory was masking the version used by the default location - This is an issue on our end and if it occurs you should notify a Bioconductor team member. Lori Shepherd Bioconductor Core Team Roswell Park Cancer Institute Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263 From: Bioc-devel <bioc-devel-boun...@r-project.org> on behalf of Paul Shannon <paul.thurmond.shan...@gmail.com> Sent: Tuesday, April 10, 2018 7:25:54 PM To: bioc-devel Subject: [Bioc-devel] right version "masked" by wrong version - not sure what "masked means" I am trying to build IGV (a new submission) on windows (tokay2) after linux and macOS build clean. IGV needs its base class package, BrowserViz, at version >= 2.0, whose build report is OK for install, build, and build bin. BrowserViz 2.0.11 fails check, probably because now web browser is available on the build machines. The IGV build on windows reports an error I have not seen before. Can anyone help? What does �masked� mean in this context - not of a function, method or variable, but apparently of the entire package? - Paul * installing *source* package 'IGV' ... ** R ** inst ** byte-compile and prepare package for lazy loading Warning: version 2.0.11 of 'BrowserViz' masked by 1.11.0 in C:/Users/pkgbuild/packagebuilder/workers/jobs/704/R-libs Error : package 'BrowserViz' 1.11.0 was found, but >= 2.0 is required by 'IGV' ___ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you. [[alternative HTML version deleted]] ___ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
Re: [Bioc-devel] right version "masked" by wrong version - not sure what "masked means"
Thanks, Lori. The package masking problem went away a few days ago. - Paul > On Apr 13, 2018, at 10:31 AM, Shepherd, Lori <lori.sheph...@roswellpark.org> > wrote: > > Generally this means that there are multiple locations where the package is > installed - as determined by .libPaths() - > > The single package builder specifies a package specific place to install > packages that are not installed by the daily builder > C:/Users/pkgbuild/packagebuilder/workers/jobs/704/R-libs > > The package that was installled in this directory was masking the version > used by the default location - > > This is an issue on our end and if it occurs you should notify a Bioconductor > team member. > > > > Lori Shepherd > Bioconductor Core Team > Roswell Park Cancer Institute > Department of Biostatistics & Bioinformatics > Elm & Carlton Streets > Buffalo, New York 14263 > From: Bioc-devel <bioc-devel-boun...@r-project.org> on behalf of Paul Shannon > <paul.thurmond.shan...@gmail.com> > Sent: Tuesday, April 10, 2018 7:25:54 PM > To: bioc-devel > Subject: [Bioc-devel] right version "masked" by wrong version - not sure what > "masked means" > > I am trying to build IGV (a new submission) on windows (tokay2) after linux > and macOS build clean. > > IGV needs its base class package, BrowserViz, at version >= 2.0, whose build > report is OK for install, build, and build bin. BrowserViz 2.0.11 fails > check, probably because now web browser is available on the build machines. > > The IGV build on windows reports an error I have not seen before. Can anyone > help? What does “masked” mean in this context - not of a function, method or > variable, but apparently of the entire package? > > - Paul > > * installing *source* package 'IGV' ... > ** R > ** inst > ** byte-compile and prepare package for lazy loading > Warning: version 2.0.11 of 'BrowserViz' masked by 1.11.0 in > C:/Users/pkgbuild/packagebuilder/workers/jobs/704/R-libs > Error : package 'BrowserViz' 1.11.0 was found, but >= 2.0 is required by 'IGV' > > ___ > Bioc-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/bioc-devel > > This email message may contain legally privileged and/or confidential > information. If you are not the intended recipient(s), or the employee or > agent responsible for the delivery of this message to the intended > recipient(s), you are hereby notified that any disclosure, copying, > distribution, or use of this email message is prohibited. If you have > received this message in error, please notify the sender immediately by > e-mail and delete this email message from your computer. Thank you. ___ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
[Bioc-devel] right version "masked" by wrong version - not sure what "masked means"
I am trying to build IGV (a new submission) on windows (tokay2) after linux and macOS build clean. IGV needs its base class package, BrowserViz, at version >= 2.0, whose build report is OK for install, build, and build bin. BrowserViz 2.0.11 fails check, probably because now web browser is available on the build machines. The IGV build on windows reports an error I have not seen before. Can anyone help? What does “masked” mean in this context - not of a function, method or variable, but apparently of the entire package? - Paul * installing *source* package 'IGV' ... ** R ** inst ** byte-compile and prepare package for lazy loading Warning: version 2.0.11 of 'BrowserViz' masked by 1.11.0 in C:/Users/pkgbuild/packagebuilder/workers/jobs/704/R-libs Error : package 'BrowserViz' 1.11.0 was found, but >= 2.0 is required by 'IGV' ___ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
