[Bioc-devel] Release branch commits disabled today

2016-10-12 Thread Martin Morgan
As part of the release schedule http://bioconductor.org/developers/release-schedule/ the ability to commit to the Bioconductor 3.3 branch will end today at approximately 3pm. The final 3.3 build will be run this evening. The ability to commit to the devel branch (in preparation for the 3.4

[Bioc-devel] philr recent build fail

2016-10-12 Thread Justin Silverman
Hi All, I just checked on the status of philr build/check report. It had been clear as of 2 weeks ago but when I just checked it appears to be failing to build on all platforms. (included built report from malbec1 below). I tried R CMD check and BiocCheck on my local machine without is

Re: [Bioc-devel] philr recent build fail

2016-10-12 Thread Shepherd, Lori
This is a problem with ggtree not with your package. You should be okay. Lori Shepherd Bioconductor Core Team Roswell Park Cancer Institute Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263 From: Bioc-devel on beha

Re: [Bioc-devel] Release branch commits disabled today

2016-10-12 Thread Martin Morgan
The 3.3 branch is now frozen. Commits to the devel branch are still possible. Martin On 10/12/2016 06:48 AM, Martin Morgan wrote: As part of the release schedule http://bioconductor.org/developers/release-schedule/ the ability to commit to the Bioconductor 3.3 branch will end today at appr

[Bioc-devel] NEWS files

2016-10-12 Thread Martin Morgan
Package authors -- please update your NEWS files so that your changes during this release cycle can be included in the release notes. The deadline for updates is this Friday, October 14. A well-formatted NEWS (or NEWS.Rd) file can be parsed by the 'news()' function. An example NEWS file is

[Bioc-devel] RMassBank (almost) builds ...

2016-10-12 Thread Schymanski, Emma
Hi all, Thanks to Laurent and Jo for updating MSnbase and thanks to the BioC team for getting the email updates working again! The good news is that RMassBank now builds on most platforms... but ... 1) we have a build error due to a Java version issue with rcdk, this has been a problem on relea

Re: [Bioc-devel] Automatic build failure notifications

2016-10-12 Thread Hervé Pagès
Hi, The automatic build failure notifications are now up and running. They'll be sent every day around 4:40 PM EST (that's about 1 h after the daily build report gets updated) to maintainers of packages that are failing on the Linux builder (malbec1). We'll switch to one notification per week af

Re: [Bioc-devel] NEWS files

2016-10-12 Thread Dario Strbenac
Good day, ClassifyR has a NEWS file, but I don't see any link to it on ClassifyR's webpage. There are no warning or errors during the checking process. What is causing it to be missed ? I also tried news(package = "ClassifyR") and it renders well, although the R logo is gigantic. -

Re: [Bioc-devel] NEWS files

2016-10-12 Thread Martin Morgan
On 10/12/2016 08:00 PM, Dario Strbenac wrote: Good day, ClassifyR has a NEWS file, but I don't see any link to it on ClassifyR's webpage. There are no warning or errors during the checking process. What is causing it to be missed ? I also tried news(package = "ClassifyR") and it renders well, al

Re: [Bioc-devel] NEWS files

2016-10-12 Thread Hervé Pagès
On 10/12/2016 05:00 PM, Dario Strbenac wrote: Good day, ClassifyR has a NEWS file, but I don't see any link to it on ClassifyR's webpage. I see it: https://bioconductor.org/packages/devel/bioc/html/ClassifyR.html Where are you looking? H. There are no warning or errors during the check

Re: [Bioc-devel] NEWS files

2016-10-12 Thread Dario Strbenac
Good day, I see it, too. There's no problem. -- Dario Strbenac University of Sydney Camperdown NSW 2050 Australia ___ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel