est_check("MSPC")
Error: No tests found for MSPC
Execution halted
Add some unit tests, see
https://bioconductor.org/developers/unitTesting-guidelines/
Dan
----- Original Message -----
> From: "Jurat Shayidin"
> To: "lcollado" , "bioc-devel"
&g
ndoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back
> to
> > R Markdown v1.
> > Quitting from lines 60-64 (vignette.Rmd)
> > Error: processing vignette 'vignette.Rmd' failed with diagnostics:
> > subscript out of bounds
> > Execution halted
>
data
> git commit
> git push
>
> Dan
>
>
>
> - Original Message -
> > From: "Jurat Shayidin"
> > To: "Dan Tenenbaum" , "bioc-devel" <
> bioc-devel@r-project.org>
> > Sent: Sunday, December 4, 2016 5:12:50 AM
>
quot; , "bioc-devel"
>
> Sent: Sunday, December 4, 2016 5:12:50 AM
> Subject: Re: [Bioc-devel] package vignette error : external data can't be
> captured when compiling package vignette
> Dear Dan :
>
> Thanks again for your kind help. I did clean up my pack
ACE but not DESCRIPTION, relying on BiocStyle but not
> mentioning it in DESCRIPTION, etc.
>
> Dan
>
>
>
> ----- Original Message -
> > From: "Jurat Shayidin"
> > To: "Dan Tenenbaum" , "bioc-devel" <
> bioc-devel@r-project.org
"
> To: "Dan Tenenbaum" , "bioc-devel"
>
> Sent: Friday, December 2, 2016 9:11:29 AM
> Subject: Re: [Bioc-devel] package vignette error : external data can't be
> captured when compiling package vignette
> Dear Dan :
>
> I forgot to commit vig
bounds
Execution halted
C:\Program Files\R\R-devel\bin\x64>
How I fix R CMD check error above ? system.file() still can't detect
external data. Any idea please ? Thanks a lot
Best regards :
Jurat
On Fri, Dec 2, 2016 at 5:43 PM, Dan Tenenbaum
wrote:
See below.
- Original Message --
iled with diagnostics:
> subscript out of bounds
> Execution halted
>
> C:\Program Files\R\R-devel\bin\x64>
>
>
> How I fix R CMD check error above ? system.file() still can't detect
> external data. Any idea please ? Thanks a lot
>
> Best regards :
>
> Jurat
t
On Fri, Dec 2, 2016 at 5:43 PM, Dan Tenenbaum
wrote:
See below.
- Original Message -
From: "Jurat Shayidin"
To: "Dan Tenenbaum" , "bioc-devel" <
bioc-devel@r-project.org>
Sent: Friday, December 2, 2016 8:32:35 AM
Subject: Re: [Bioc-devel] pac
How I fix R CMD check error above ? system.file() still can't detect
external data. Any idea please ? Thanks a lot
Best regards :
Jurat
On Fri, Dec 2, 2016 at 5:43 PM, Dan Tenenbaum
wrote:
> See below.
>
> ----- Original Message -
> > From: "Jurat Shayidin&qu
See below.
- Original Message -
> From: "Jurat Shayidin"
> To: "Dan Tenenbaum" , "bioc-devel"
>
> Sent: Friday, December 2, 2016 8:32:35 AM
> Subject: Re: [Bioc-devel] package vignette error : external data can't be
> captured when
with:
>
> extdata/
> foo.txt
>
> HTH
> Dan
>
>
> ----- Original Message -
> > From: "Jurat Shayidin"
> > To: "Hervé Pagès" , "bioc-devel" <
> bioc-devel@r-project.org>
> > Sent: Friday, December 2, 2016 5:36:28 A
quot;
>
> Sent: Friday, December 2, 2016 5:36:28 AM
> Subject: Re: [Bioc-devel] package vignette error : external data can't be
> captured when compiling package vignette
> Dear Hervé :
>
> Thanks again for your response on my issue. I've read your message ve
Dear Hervé :
Thanks again for your response on my issue. I've read your message very
carefully and did all you suggested to me, still can't fix the vignette
compilation error. I have developed my package on windows machine under
devel version of R and Bioc, all unit test works fine to me. I don't
Hi,
Make sure you understand the difference between the *package source
tree*, which you control and where you must create the inst/ folder,
and the *package installation folder*, which gets created and
populated by 'R CMD INSTALL'. The exact location of the *package
installation folder* doesn't
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