[Biojava-l] Flash Website Builder

Title: 123Turnkey.com BUILD A CUSTOM WEBSITE... ONLINE... IN JUST FIVE MINUTES! Click Here to start building your FREE* custom website today! Having a presence on the internet is gradually becoming a necessity! Whether you are a business person, looking to k

[Biojava-l] HitSectionSAXParser and BlastLikeVersionSupport

Hi there, I'm trying to write a small program that reads in only the HIT section of BLAST output (i.e. starting with ">"), by instantiating a HitSectionSAXParser class, and I noticed that the BlastLikeVersionSupport variable oVersion needs to be already populated by the time the class is instanti

[Biojava-l] New package: org.biojava.bibliography

Hi... I've just checked in a new package to the CVS HEAD version of BioJava, which contains objects for representing bibliographic references, and interfaces for querying bibliographic databases. This package was originally part of the OpenBQS codebase: http://industry.ebi.ac.uk/openBQS/ Man

Re: [Biojava-l] JavaDoc API

On Wed, Feb 06, 2002 at 01:04:26PM -0600, Stine, Matt wrote: > How current is the JavaDoc API that is currently posted on the biojava.org > website? Right now, I think the browsable copy on the website reflects the 1.10 release, which is now about a year old. The core interfaces haven't changed

[Biojava-l] Announce: BioJava 1.2rc1

Hi... I've just uploaded BioJava 1.2rc1 source code, binaries, and javadocs to: http://www.biojava.org/download/ If there aren't any problems with this build, we're hoping to get a 1.2 final out within the next few days. So please test this release as much as possible. CVS uses can also ch

[Biojava-l] JavaDoc API

How current is the JavaDoc API that is currently posted on the biojava.org website? Thanks! Matt Stine Software Engineer Hartwell Center for Bioinformatics and Biotechnology St. Jude Children's Research Hospital 332 N. Lauderdale St. Memphis, TN 38105-2794 Phone: 901.495.4602 Fax: 901.495.2945 [

Re: biojava website ( was Re: [Biojava-l] Documentation Overview spelling correction)

No, I'm not talking about big website redesigns or lots of coding. The problems with the BioJava website are rather deeper than that, in that most of the content hasn't actually been updated for a year or more, despite all the improvements which have gone into the product. I've done a few things

biojava website ( was Re: [Biojava-l] Documentation Overview spelling correction)

Don't reinvent the wheel- people interested in working on our next-generation (apache + php apparently) website should just up and join our existing webteam. We already have the server, now we just need smart people to make things happen in a timely fashion. People interested in joining the o

Re: [Biojava-l] Documentation Overview spelling correction

I'm one of your biojava-l subscribers with web experience and willing to help. Please let me know how to get involved. --Jeff --- Thomas Down <[EMAIL PROTECTED]> wrote: > On Wed, Feb 06, 2002 at 08:38:41AM +, Tony > Watkins wrote: > > Hi. > > > > Apologies in advance if this mail is aimed at

[Biojava-l] How to predict RNA tertiary structure

Hi. I want to know how I can predict RNA tertiary structure, Pseudoknot only with sequences. If you have any information, please let me know that.  »ý°¢ÇÏ´Â Áö´ÉÇü °Ë»ö ³×À̹ö ³Ø¼­Ä¡ Ưº°ÇÑ e ¸ÞÀÏÀ» ¿øÇÒ ¶©, ¾÷±×·¹ÀÌµå ³×À̹ö ¸ÞÀÏ http://www.naver.com

Re: [Biojava-l] Documentation Overview spelling correction

On Wed, Feb 06, 2002 at 08:38:41AM +, Tony Watkins wrote: > Hi. > > Apologies in advance if this mail is aimed at the wrong place. No, this list is as good a place as any. > I believe there may be an error in the documentation overview first paragraph. > > "It provides a framework for buil

Re: [Biojava-l] taxanomical API

On Wed, Feb 06, 2002 at 09:11:01AM +, Alan Robinson wrote: > > The interface is defined in the IDL and is very simple (though we do > include a method to return a translation table for an organism): > > Taxonomy API: http://corba.ebi.ac.uk/idl/taxonomy.txt Thanks for the pointer. T

Re: [Biojava-l] GCG Format

On Tue, Feb 05, 2002 at 02:13:06PM -0600, Stine, Matt wrote: > Is there currently any work being done on GCG formatted data in bio.seq.io? > I know there is a module within bioperl. Just curious before I started > working on one of my own. I don't think anyone's done this yet (although the GCG c

Re: [Biojava-l] taxa

Tom Oinn wrote: > A potentially interesting aside; a lot of work was (and is being) done > on making our taxonomy more interesting. This has been done primarily by > adding auxiliary data to nodes in the taxonomic tree, such as images, > range maps and sounds where applicable. What would the best

RE: [Biojava-l] taxanomical API

Hello everybody, > Subject: RE: [Biojava-l] taxanomical API > Date: Tue, 5 Feb 2002 08:40:56 +1300 > From: "Schreiber, Mark" <[EMAIL PROTECTED]> > To: "Matthew Pocock" <[EMAIL PROTECTED]>, > > Hi - > > I had some prior experiences with the NCBI taxonomy database. If the > EMBL one is pretty m

[Biojava-l] Documentation Overview spelling correction

Hi. Apologies in advance if this mail is aimed at the wrong place. I believe there may be an error in the documentation overview first paragraph. "It provides a framework for building everything from simple scripts to comples applications. " I think the word *comples* should read *complete*