Yes, I think it does require a surface as input. You can generate it in the
GUI, like you cite below, or you can see if you can get this to work, toggling
off 1-6 and toggling on what you need in 7-17. I never used this much, and I'm
not sure it will work in your case, but the fact that it
Hi Daniel,
Can you send a listing of the directory containing the surfaces you're using?
This will tell us not only whether you're using PALS or fs_LR, but also whether
you are using caret5-style files or workbench (GIFTI) style files.
This file, for example, will work if you've got fs_LR
Hi Donna,
Sure! As I said I'm a newbie to caret, so all I did is very basic. I basically
downloaded the Apple Macintosh 64-bit version of Caret v5.65 for my Mac OS
10.8.4 and then I installed it in /Applications/caret
there is a subdirectory called data_files/ there.
within the subdirectory,
Download this zip file (click on diskette shaped icon next to action pull-down
menu):
inter-atlas_deformation_maps.zip
http://sumsdb.wustl.edu/sums/download.do?archive_id=8292575
There are pals_L and pals_R subdirs that contain composite paint files you can
copy/move into your atlas subdirs.
Hi Donna,
Thanks, but that -volume-segment command is what I tried in the first email
and it produces the error I mentioned. It appears there is no command
equivalent for the GUI Volume - Segmentation - Reconstruct into surface,
I'll just have to work around it for now.
Cheers,
Tristan
On Mon,
