Thursday, December 18, 2014 at 5:50 PM
To:
Subject: [caret-users] Myelin Mapping: different number of nodes
Hi - I'm trying to run myelin mapping. I've processed my data with
FreeSurfer v5.3, applied freesurfer_to_fs_LR.sh, downloaded the Conte69
atlas, and followed all t
Hi - I'm trying to run myelin mapping. I've processed my data with
FreeSurfer v5.3, applied freesurfer_to_fs_LR.sh, downloaded the Conte69
atlas, and followed all the steps outlined on
Caret:Operations/MyelinMapping. I obtained the L.MyelinMapping.metric,
R.MyelinMapping.metric, T1wDividedByT2w.nii
00
>>> time_offset0.00
>>> intent Unknown
>>> intent_code0
>>> intent_name
>>> intent_p1 0.00
>>> intent_p2 0.00
>>> intent_p3 0.00
>>> qform_name Scanner Anat
>>> qform_
.00 0.00 1.00
>> qform_xorient Right-to-Left
>> qform_yorient Superior-to-Inferior
>> qform_zorient Posterior-to-Anterior
>> sform_name Scanner Anat
>> sform_code 1
>> sto_xyz:1 -1.00 -0.00 0.00 123.848427
>> sto_xy
1.00 -86.819458
> sto_xyz:3 -0.00 -1.00 0.00 136.943146
> sto_xyz:4 0.00 0.00 0.00 1.00
> sform_xorient Right-to-Left
> sform_yorient Superior-to-Inferior
> sform_zorient Posterior-to-Anterior
> file_type NIFTI-1+
> f
9458
>sto_xyz:3 -0.00 -1.00 0.00 136.943146
>sto_xyz:4 0.00 0.00 0.00 1.00
>sform_xorient Right-to-Left
>sform_yorient Superior-to-Inferior
>sform_zorient Posterior-to-Anterior
>file_type NIFTI-1+
>file_code 1
>descr
May 14 2013
aux_file
> Please paste the output of fslhd on both files.
>
> Peace,
>
> Matt.
>
> From: SHAHIN NASR
> Reply-To: "Caret, SureFit, and SuMS software users"
>
> Date: Thursday, July 31, 2014 at 11:18 AM
> To: "Caret, SureFit, and
Please paste the output of fslhd on both files.
Peace,
Matt.
From: SHAHIN NASR
Reply-To: "Caret, SureFit, and SuMS software users"
Date: Thursday, July 31, 2014 at 11:18 AM
To: "Caret, SureFit, and SuMS software users"
Subject: [caret-users] Myelin Mapping
Hi,
Hi,
I am trying to do myelin mapping. I am following your instructions on
this website:
http://brainvis.wustl.edu/wiki/index.php/Caret:Operations/MyelinMapping
and I don't get any error till the last command which says:
MYELIN MAPPING ERROR: t1 Dimensions do not match t2 dimensions
Bu
It's possible it is trying to write something to the current directory and
you don't have permission to write there.
Peace,
Matt.
On 3/9/14 2:02 PM, "Righart, Ruthger" wrote:
>Dear Caret experts,
>
>I would like to perform myelin mapping following the descriptions on
>the Caret website. All th
Dear Caret experts,
I would like to perform myelin mapping following the descriptions on
the Caret website. All the pre-processing operations seem to work fine
until the point that I use caret_command -myelin mapping.
Here the error that I get is: MYELIN MAPPING ERROR: ERROR
DEBUG.L.METRIC: OP
, July 01, 2012 4:13 PM
To: caret-users@brainvis.wustl.edu
Subject: [caret-users] myelin mapping
Hi -
I had a data accident a while ago. I lost a freesurfer dir.
But, since I was importing to caret I have lh and rh white and pial from
freesurfer, and I have the thickness files for each. And I have
Hi -
I had a data accident a while ago. I lost a freesurfer dir.
But, since I was importing to caret I have lh and rh white and pial from
freesurfer, and I have the thickness files for each. And I have the
appropriate MRIs.
These files took a LONG time to get right, and then it took quite a whil
-users-boun...@brainvis.wustl.edu
[mailto:caret-users-boun...@brainvis.wustl.edu] On Behalf Of Timothy Coalson
Sent: Sunday, April 22, 2012 10:49 PM
To: Caret, SureFit, and SuMS software users
Subject: Re: [caret-users] myelin mapping
Since what the myelin mapping maps is basically T1/T2, you
Since what the myelin mapping maps is basically T1/T2, you may be able to
adjust your data to be in a plausible range for these values, and then fake
the T2 by taking an image that looks like a T1 and dividing it by this
adjusted data. As long as your data is not discontinuous at the edge of
the r
15 matches
Mail list logo
