Dear Donna,
thank you so much for your reply. Indeed I managed to get the info I needed
using the Statistical Paint Report and a very stripped down spec file (so
that the report contains only the relevant info). However I also prefer
scripts, so I will have a look at them (the caret_command must be a
goldmine indeed)
all the best,
leonardo
On Tue, Jun 30, 2015 at 7:00 PM,
wrote:
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>1. Re: statistical report on areal enlargement (Donna Dierker)
>
>
> --
>
> Message: 1
> Date: Mon, 29 Jun 2015 13:54:26 -0500
> From: Donna Dierker
> To: "Caret, SureFit, and SuMS software users"
>
> Subject: Re: [caret-users] statistical report on areal enlargement
> Message-ID: <51bf4f46-ced1-4792-8983-ed1dea6ae...@brainvis.wustl.edu>
> Content-Type: text/plain; charset=iso-8859-1
>
> Hi Leonardo,
>
> It is possible that one more skilled than I could get Statistical Paint
> Report to do what you want with less trouble. But for me, scripting it via
> the command line would be more straightforward. Have a look at two scripts
> here:
>
> http://brainmap.wustl.edu/pub/donna/WUSTL/BURTON/SCRIPTS/anova_two_way.sh
>
> http://brainmap.wustl.edu/pub/donna/WUSTL/BURTON/SCRIPTS/metric_region_mean.sh
> login pub
> password download
>
> The anova_two_way.sh one has this bit:
>
> caret_command -surface-region-of-interest-selection $COORD $TOPO $ROI
> $ROI -paint $PAINT 1 $PAINT_NAME ANDNOT
>
> And the metric_region_mean.sh has lines that might be handy.
>
> See if you can frankenstein them together to do what you need, because I
> suspect you will get tired of selecting each paint name in the Surface:
> Region of Interest: select nodes with paint dialog.
>
> Donna
>
>
> On Jun 29, 2015, at 10:28 AM, Leonardo Cerliani <
> leonardo.cerli...@gmail.com> wrote:
>
> > dear Donna,
> >
> > I am trying to do something apparently simple, but cannot manage, so I
> would like to ask your help.
> >
> > I have loaded the areal expansion overlay onto the caret (contained in
> the CARET_TUTORIAL_SEPT06/COMPARE_MACAQUE_HUMAN directory) and I would like
> to have an estimate of the areal expansion for each area in the
> (registered) LVE00 paint. Basically, an average areal expansion value over
> each LVE00 region. I tried selecting all the nodes in the paint, and to
> generate a statistical report, but I get only the average areal expansion
> value over all the cortex. Is it really not possible to do that?
> >
> > thank you in advance for your help,
> > leonardo
> >
> > --
> > Leonardo Cerliani, PhD
> >
> > Institut du Cerveau et de la Moelle ?pini?re (ICM)
> > 47 Boulevard de l'H?pital, UMRS 975
> > Paris, France
> > ___
> > {o,o}
> > |)__)
> > --"-"--
> > http://openlibrary.org/people/leonardocerliani/lists
> >
> > A brain disconnected from the heart is an airplane without wings
> > lc
> >
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> End of caret-users Digest, Vol 138, Issue 11
>
>
--
Leonardo Cerliani, PhD
Institut du Cerveau et de la Moelle épinière (ICM)
47 Boulevard de l'Hôpital, UMRS 975
Paris, France
___
{o,o}
|)__)
--"-"--
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A brain disconnected from the heart is an airplane without wings
lc
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