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SYNCHROTRON BEAM TIME FOR MACROMOLECULAR CRYSTALLOGRAPHY
AT THE UNDULATOR BEAMLINE X06SA AT SLS FROM SEPTEMBER- DEC 2007
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- PILATUS 6M pixel detector available for
Dear users and developers,
The next issue of CCP4 webnewsletter is to be published this summer.
Any contribution is more than welcomed, deadline is currently the first
week of August (1-3 August).
As a reminder the topics of the webnewsletter covers the following:
Articles may cover any
I'm trying to use an EM map as model in phaser. I've got the map from the
colaborator in ccp4 format, how should I convert it to .mtz file?
Thanks.
Cynthia
Alongside the eCheminfo Community of Practice meeting at Bryn Mawr College,Philadelphia this year (see link at bottom) we are holding the followingtwo workshops discussing latest methods, applications, best practices forcomparative studies and validation, and areas of opportunity for
Dear all,
trying to install electron density calculation program
eden-5.3-1.2.el4.mok.i386.rpm under SUSE linux 9.3-10.1
the libfftw.so.2 is missing. Does anybody know which provider is so
equivalent to SUSE
that the programs can be mixed (fftw2 from REDHAT, MANDRAKE, ...)?
Many thanks,
Jürgen
SuSE is a Mandrake derivative, so that is your best bet. It is likely that the
Rehat RPM will work too. Make sure that the library goes to the right place
after you install it (especially if you go Redhat) - you may have to put a
symbolic link where the program in question is looking for
These are B factors RELATIVE to your TLS parameters.
You need to run tlsanl to get back to something comparable to the
individual B factors..
Eleanor
CRAIG MCELROY wrote:
Hi all,
I'm working on the structure of a heterodimer phased by molecular replacement
using data to 2.9 angstroms. After
Since I used Suse long before I ever heard of Mandrake/driva
I found this interesting andf a double check showed it not to be the case.
http://upload.wikimedia.org/wikipedia/commons/e/ed/LinuxDistroTimeline.png
m
From: Soisson, Stephen Michael [EMAIL PROTECTED]
Reply-To: Soisson, Stephen
Eleanor Dodson wrote:
Well - the old way to estimate sigma was Sqrt(I**2 +
constant_representing background) and then get
Sigma_F as ~ sqrt(SigI)/(2*F ) .
sftools would calculate that for you and append it to the output file..
Eleanor
I suggested something similar to Pete but sufficiently
We seek to fill two protein purification and crystallization positions
in the structural biology group at the Groton, Connecticut campus of
Pfizer Global Research and Development.
Job Description:
The selected candidate will have passion and experience in the
purification and crystallization
CCP4-ers,
I am building CCP4 in FC6 on some new workstations. When I compile from
source, using either the automated install.sh or manually using
configure-make-make install, Phaser does not get installed (configure
doesn't detect it) even though the Phaser and CCBTX packages are present
or
Hi Juergen,
it might be worthwhile to search for this library in SuSE's
software installation program. It should be in the development section.
The RPM file from another provider will probably work, too. If all else
fails, you can install it from the sources (www.fftw.org).
Best regards,
I suspect you can use the Reflection utilities
Convert to mtz
and ask for mmCIF input - this is meant to be mmCIF compliant.. I think?
Eleanor
U Sam wrote:
Hi
I would like to create ccp4 format 2fo-fc and fo-fc map from .fcf file
created in shelex.
I can load .fcf file in coot to see the
Hi,
I have a question for everyone. I wanted to up-weight my high
resolution terms in my electron density map by applying a B-factor
sharpening term. I have mtz files produced from DM and I usually use
Coot to generate my electron density maps. I was wondering is there
an easy way to
Eleanor was kind enough to modify truncate years ago for me to do this -
I would guess the feature is still there.
Thanks again Eleanor!
Steve
-Original Message-
From: CCP4 bulletin board [mailto:[EMAIL PROTECTED] On Behalf Of
Jeff Lee
Sent: Wednesday, June 13, 2007 1:19 PM
To:
Senility is, in fact, setting in.
It was a modified version of CAD! Sorry for the confusion.
To further compound the confusion, I am not sure if my solution is what
you are really looking for, although I suspect you should try it. What
we did was use an overall negative B-factor to achieve a
Dear CCP4bb
thanks so much for the helpful information regarding carbohydrate
refinement. Kim's recommendation (see below) for the validation server
worked really well and helped me to finally figure out what is going on.
Seems as if REFMAC5 (part of ccp4-6.0.2 version) is not handling
Sorry guys,
my previous message obviously reflected that I am not very familiar with
sugars. Kelvin's email clarified what was going on: the REFMAC dictionary
for a-L-fucose is perfectly correct, my mistake was that I was not aware
of the reverse relation of alpha and beta-linkages in L and
Colleagues,
I am interested in making a figure of a recently solved
protein-DNA complex, such that the DNA is colour-coded
according to its degree of distortion away from classic B-DNA.
Is anyone aware of a program that can do this?
With thanks,
Aaron Oakley
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