Hi,
I found the current release of xia2 or XDSME is not compatible with latest XDS.
Is there any similar software available?
Thanks!
Dear Petr,
Presumably you're just talking about Phaser for molecular replacement, because
Phaser still produces HL coefficients for SAD phasing.
There were two major reasons we made this change. First, the presence of HL
coefficients can fool some programs into thinking that you have
Check the highly build of xia2:
http://xia2.blogspot.it/2013/06/nightly-build.html
the one of Jun 25th surely works with the new version of XDS, provided you
install the nightly build of phenix (works with dev-1412).
hth,
ciao,
S
On Jul 3, 2013, at 10:20 AM, Rain Field rainfiel...@163.com
Hi Rhys,
Since I did not see a reaction on the BB a few comments from me.
The first is that it never hurts to grow better crystals. Life and the referees
will be much easier.
The good news is that it is often possible to get surprisingly useful data from
badly looking diffraction images.
Dear CCP4BB members,
what is the usual practice regarding secondary structure assignments when
preparing publication figures of protein structures and topology diagrams from
deposited PDB files? The deposited PDB files already contain such assignments
in the header section (using PROMOTIF?).
Hi,
I thought I'd pose my perennial question about 3D-stereo on Macs.
There is the Zalman solution (not terribly good, and are they making monitors
any more?) - are there other vendors doing the same thing? Maybe at higher
resolutions??
In addition, is there any evidence
Dear Randy,
Thank you for your quick response. Obviously, you have given this a lot
of thought.
I would like to have the HL coefficients in the phaser output file for
downstream compatibility with density modification programs such as
resolve.
Thank you,
Petr
On 07/03/2013 10:46 AM, Randy
Hi Miha,
I thought the PDB actually uses DSSP. Perhaps it is a different version,
there have been some new releases recently. Anyway, there is no reason why
you should stick to the assignment of the PDB. If another program gives
slightly different results you can use those as long as you make
It turns out that these images contain two distinct lattices, separated by a
rotation of about 5 degrees. Using the development version of iMosflm the two
lattices can be easily indexed and integrated. However, the data is quite
incomplete due to severe radiation damage.
Andrew
On 2 Jul
you are probably right, but the depositor can override the automatic secondary
structure assignment by submitting his own. Perhaps this is what happened here.
I would recommend the original poster to generate them by hand by inspection of
the structure plus density if possible - i.e. not trust
Dear All,
Sorry for my off-topic question. Our Bio-Rad Fraction Collector developed a
problem lately. It kept misaligning with the tubes, especially when the robotic
arm moves from one row to the next, and we have to watch over it frequently to
avoid losing fractions. We tried repeatedly to
Xavier,
What Mac and graphics card works for stereo on the LG display?
Mut be a newish model to have HDMI output.
Thanks, Mark
Hi,
Sorry, I'm a bit late on this one.
I have just uploaded a new version of xdsme (0.5.0.2) that works with the
latest version of xds. We have tested it for a few days on the beamlines, but
do not hesitate to report bugs (directly to me).
You can catch it here: http://code.google.com/p/xdsme/
Deal CCP4 member's
Sorry for asking Off topic question.
Please correct me if i am doing wrong measurements. I am determining the
double stranded concentration using the absorbance spectrophotometer
reading at 260A and extinction coefficients for individual
14 matches
Mail list logo
