[ccp4bb] Postdoctoral position in membrane protein structure and function at the NIH

2018-02-12 Thread Anirban Banerjee
There is an open postdoctoral position for a membrane protein structure-function project in my lab at the NIH. We are currently focusing on integral membrane enzymes (Science. 2018, doi: 10.1126/science.aao6326) and transporters of transition metal ions (J Biol Chem. 2018, doi:

Re: [ccp4bb] Resolution cut off

2018-02-12 Thread Vands
Thanks, Robbie, I will try this. -Vandna On Mon, Feb 12, 2018 at 3:00 PM, Robbie Joosten wrote: > Dear Vandna, > > > > Paired refinement is indeed the most reliable way to see whether the > higher resolution data help your refinement. It is done automatically on >

Re: [ccp4bb] Resolution cut off

2018-02-12 Thread Robbie Joosten
Dear Vandna, Paired refinement is indeed the most reliable way to see whether the higher resolution data help your refinement. It is done automatically on the pdb-redo.eu server if the resolution of the data used in refinement so far is lower than the resolution of your dataset (by at least

Re: [ccp4bb] Resolution cut off

2018-02-12 Thread Graeme Winter
The most useful information for this can come from paired refinement, which will tell you if the data in outer shell is improving the model. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3689524/ For example On balance it’s unlikely throwing away measurements will make your model better...

[ccp4bb] Resolution cut off

2018-02-12 Thread Vands
Hi, I solved a crystal structure at 1.69 A resolution with R /R free 18 / 20 i used 1.69 A data. Data completeness is 100 % and for the outer shell, it's 50 %. for i /Sig I > 1. Do I need to cut resolution in refinement?? Vandna Kukshal Postdoctral Research Associate Dept. Biochemistry

Re: [ccp4bb] dials.image_viewer problem on Windows [CCP4 console]

2018-02-12 Thread David Waterman
Dear Rens de Vries, Sorry for the trouble. Can you please try the following? 1. Open the file C:\CCP4-7\7.0\InstallSetup.cmd in a text editor 2. Change the string "--skip-phenix-dispatchers" to "--skip_phenix_dispatchers" (i.e. last two dashes to underscores) 3. Save the file 4.

[ccp4bb] Tenure-Track Faculty Position in Structural Biology and Disease

2018-02-12 Thread Matthew Neiditch
Rutgers Biomedical and Health Sciences Faculty Position in Structural Biology and Disease The Department of Microbiology, Biochemistry, and Molecular Genetics and the interdepartmental Center for Immunity and Inflammation at Rutgers New Jersey Medical School seeks an exceptional Structural

[ccp4bb] EM Validation Developer Post

2018-02-12 Thread Maya Topf
Dear all, We are looking for a highly-motivated and creative Post Doctoral Researcher with a structural biology/bioinformatics background and experience in software development to work in Birkbeck College, London, on an exciting computational project in the field of cryoEM. The position is a

[ccp4bb] dials.image_viewer problem on Windows [CCP4 console]

2018-02-12 Thread Vries, R.M.J.M. de
Dear all, Although I normally use Linux for all my work with CCP4i2, I now use the Windows because of a workshop I will be giving. Here the audience is using Windows almost exclusively, therefore I chose to adapt to it. After using the xia2/DIALS pipeline I wanted to use the