Stating the crystallography is dead might be a bit premature, it is still king
for depositions.
In 2017 we had a large number of fragment screening experiments deposited.
From: CCP4 bulletin board On Behalf Of Nukri Sanishvili
Sent: 15 July 2019 23:09
To: CCP4BB@JISCMAIL.AC.UK
Dear all
Does anyone have used NOMAD-Ref(normal mode analysis, deformation and
refinement) server (http://lorentz.immstr.pasteur.fr/nomad-ref.php)? I want to
do refinement of my crystal structure, but it cannot be opened when I using
"X-ray refinement", the link is
Hi all,
following up on Kay's point, I think it might be worth to discuss what we as a
community understand by serial crystallography and what makes it
different from multiple crystal crystallography. I recently gave a talk about
multiple-crystal and serial crystallography at a course and I
Dear Structural Biologists,
I am posting this announce on behalf of my colleague, Dr Chantal Abergel
(chantal.aber...@univ-amu.fr), IGS, University Aix-Marseille (France).
The IGS laboratory (http://www.igs.cnrs-mrs.fr) is offering 2 Post-doc
positions for 1 year, renewable up to 3 years, in
The Prehna Lab is looking for enthusiastic MSc or PhD students to join the
Department of Microbiology at the University of Manitoba, Canada
(https://home.cc.umanitoba.ca/~prehnag/).
Our lab studies how bacteria communicate with their hosts, how they communicate
with each other, and how they
Hi Bernhard
It has been pointed out to me that my reply was not totally clear on this
point, especially to those who haven't followed up the link I sent. By
'output' from a program I mean simply a physical file written when that
program is run (i.e. every program has inputs and outputs), so I
Hello James,
I like your list, but I wonder how much of this can be covered in meaningful
depth during a single GRC.
Your item
>7) what is the best way to process serial crystallography data?
deserves differentiation; there is a huge gap between serial synchrotron
crystallography (SSX) with
Hi James,
what about the use of highly anisotropic data, what it means in terms of
macromolecule arrangement within the crystal, and how to use the data
appropriately? An obvious link to item 5) and what resolution is in such
case?
An opening to item 6) and contribution of solvent as
Dear Bernhard,
I just went through this process to deposit staraniso-corrected data
into the PDB.
I wanted to concatenate into a single mmcif the original intensities (so
that people can work with unmodified data), the modified ones from SA
(so that people can reproduce the refinement), and
Something that pops up here routinely, connected to 5) what does "resolution"
really mean?:
While new methods are being implemented to improve the accuracy of models or to
deal with weak data, how to convince editors to accept the new methods?
cheers, matthias
Dr. Matthias Barone
AG
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