Dear All,
I would like to add my 5 cents to partly answer Eugene's questions about
the script, and to follow up on Eleonor's mentioning of Zbsyzek and the
rules for placing macromolecular structures in the crystal lattice.
For the last couple of years, we have been routinely using the
Especially Frank..
Of course the grumble does not mean either deposition is "wrong" - both are
completely valid..
However at deposition there are certain tidying functions which may help
people who want to use the structures.
I absolutely agree with Zbysek (as always!) - it helps if structures
So does the CCP4 program csymmatch
Best wishes,
Martin
On 10 Nov 2019, at 16:55, R. D. Oeffner
mailto:rd...@cam.ac.uk>> wrote:
The program phenix.famos (or phenix.find_alt_orig_sym_mate) does exactly that
for a pair of pdb files.
Robert
From: Eugene Osipov
Sent: Sunday, November 10, 2019
The program phenix.famos (or phenix.find_alt_orig_sym_mate) does exactly that
for a pair of pdb files.
Robert
From: Eugene Osipov
Sent: Sunday, November 10, 2019 11:49 AM
To: CCP4BB@JISCMAIL.AC.UK
Subject: Re: [ccp4bb] A grumble
By the way, may be someone has a script to move several
FliS and FliC
Artem
On Sun, Nov 10, 2019, 03:42 Gianluca Cioci wrote:
> ps: the 3D structure
> of the complex should
> be solved at high resolution
>
> ;o)
>
>
>
>
> Dear All,
>
> I am looking for examples of two small proteins A and B that can form a
> tight complex AB.
> Each protein
There was a paper/comment in Acta Cryst by Zbigniew Dauter "the
asymmetric unit should be close to the origin".
The uncomfortable source is most probably that the result of a
molecular replacement is sometimes an asymmetric unit "elsewhere" ,
origin shifts etc.
Nice weekend
Eleanor, whom are you grumbling at? If it's at the depositors, here's a
counter-grumble:
How would a depositor even know
* know that it's "wrong"
* know what definition of "wrong" to work towards
* know that someone somewhere will care about this particular "wrongness"
*
Dear Eleanor,
>From PDB files I see that the structures were solved by molecular
replacement using pdbid 1gci as a starting model. It is hard to say
definitely without the linked paper but may be the depositors made the same
error that I did some time ago: they solved both structures using
ps: the 3D structure
of the complex should
be solved at high resolution
;o)
Dear All,
I am looking for examples of two small proteins A and B that can form a
tight complex AB.
Each protein should be straightforward to express in E.coli, well folded
and stable in the isolated form.
Also, if
Dear All,
I am looking for examples of two small proteins A and B that can form a
tight complex AB.
Each protein should be straightforward to express in E.coli, well folded
and stable in the isolated form.
Also, if possible, I would prefer monomeric proteins (although not
really mandatory).
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