Postdoctoral Fellow – Protein Crystallography University of Oklahoma Health Sciences Center, USA A postdoctoral position is available immediately in the laboratory of Dr. Marie Hanigan for a highly motivated, creative individual with strong interest in the structure and function of enzymes relevant
The CCP4 Study Weekend (3 - 5 January 2013)
East Midlands Conference Centre, University of Nottingham
Thursday 3 - MX User Meeting
Friday 4 / Saturday 5 - CCP4 Study Weekend
"Molecular Replacements"
We cordially invite you to participate in this year's Study Weekend at the the
East Midlands
e found at http://www.ccp4.ac.uk/schools/Japan-2012/
Fees:
There is no fee for the workshop, but students are responsible for their travel
and accommodation costs.
Charles Ballard, Daisuke Kohda, Garib Murshudov
--
Scanned by iCritical.
Hi Frank
this means that the anisotropy corrected data is used to calculate the twinning
statistics, moments etc. The corrected data is not used in the truncate
procedure.
Charles
On 1 May 2012, at 19:28, Frank von Delft wrote:
> Hello, a colleague just pointed me to an innocuous sentence in
Posted on behalf of Sylvie Nessler (CNRS):
Postdoctoral Fellowship in Structural Biology: Bacterial tyrosine kinases and
signalisation networks.
A post-doctoral position is available for highly motivated candidates to join
the research group of Prof. Sylvie Nessler at University Paris-sud 11. W
A post-doctoral position is available for highly motivated candidates to join a
research group interested in investigating molecular mechanisms underlying
epigenetic regulation and inheritance, and the broad area of chromatin biology.
Projects will involve structure determination of macromolecul
Dear All
the message originated from a yahoo account that had been registered since
2007. We have delisted the account.
Charles Ballard
CCP4
On 28 Feb 2012, at 17:46, William G. Scott wrote:
> I thought it was some sort of allegory for tenure-track faculty positions.
>
>
at 11:00am GMT.
The full program is at
http://www.cse.scitech.ac.uk/events/CCP4_2012/programme.html . All details
are accessible from the ccp4 homepage (http://www.ccp4.ac.uk).
Charles Ballard
CCP4
Dear Colleagues,
This is the final call for applicants for the CCP4/OIST School on protein
structure solution taking place in Okinawa, Japan from the 5th - 9th of
December 2011. The closing deadline for applications is this coming Tuesday
October 25th.
There is no registration fee for the sch
Okinawa Institute of Technology/CCP4 School on Protein Crystallography Software
This is just a reminder that the deadline for applications for the OIST/CCP4
school: From data processing to structure refinement and beyond, is October
25th.
A full provisional program and the list of speakers is n
ts outside Okinawa. Lodging will be provided at the OIST
Guest House "Seaside House". The workshop will also cover the expenses for all
meals and refreshments.
Fadel Samatay, Charles Ballard, Garib Murshudov
Diamond Light Source (UK)
Further information at: http://www.cse.scitech.ac.uk/events/CCP4_2012/
the program at:
http://www.cse.scitech.ac.uk/events/CCP4_2012/programme.html
and registration at:
http://www.cse.scitech.ac.uk/events/CCP4_2012/registration.html
Charles Ballard
CCP4
Shameless advertising, but...
CCP4 will have a booth, No. 47, and posters at the IUCr meeting in Madrid next
week.
So, I hope to see you there
Charles
n , or just the column name I do not know.
If I reduce the length of
colout it runs through successfully
Charles Ballard
CCP4
On 8 Aug 2011, at 15:27, Chris Richardson wrote:
> Dear all,
>
> We have a problem where cTruncate generates an error message when trying to
> process data fro
We are working to relax the permissions on the files to rwx r-x r-x
Charles Ballard
CCP4
On 19 Jul 2011, at 11:25, Weiergräber, Oliver H. wrote:
> Hello,
>
> version 6.2.0 of ccp4 has strange permissions set to several
> setup/configuration scripts which are read while sourcin
Dear All
An opening is available in the laboratory of Dr. Stephen Fesik
(http://www.mc.vanderbilt.edu/root/vumc.php?site=fesiklab) for a research
associate. The position requires a B.S. or M.S. degree in biochemistry or a
related field with 1-2 years of experience in a research laboratory perfo
many more.
Details are available at
http://www.ccp4.ac.uk/schools/Japan-2010/
Speakers include Garib Murshudov, Phil Evans, Gerrit Langer, Nobutoshi Ito and
Min Yao.
First priority will be given to Japanese students
Charles Ballard
CCP4
Dear All
hopefully the fix for modules.def is now in the source and binaries for ccp4
6.1.13
Charles Ballard
CCP4
On 30 Aug 2010, at 18:06, ger...@embl-hamburg.de wrote:
> Dear Colleagues,
>
> some of you might have noticed that ARP/wARP does not install cleanly with
> the lates
An opening is available in the laboratory of Dr. Stephen Fesik
(http://www.vicc.org/dd/display.php?id=4451) for a postdoc in the field of
protein x-ray crystallography. Responsibilities will include protein
expression/purification and all aspects of x-ray crystallography, including
preparatio
available at
ftp://ftp.ccp4.ac.uk/ccp4/6.1.13/updates/buccaneer-pipeline-patch.tar.gz
For binaries download after this time and date the problem should already be
corrected
Charles Ballard
CCP4
installed in /usr/local.
Charles Ballard
CCP4
On 16 Jun 2010, at 17:59, Hari Namboodiri wrote:
> Hello CCPeers,
>
> I am trying to download CCP4 and Coot on to my new Mac( Mac OSX 10.6.3). On
> the downloading site, I am seeing couple of files, which are the ones to be
> down
Continuing our journey down the scenic A65, CCP4 version 6.1.13 is available
for download. This updates clipper to 2.1 and brings in buccaneer 1.4.
Many thanks to Rafael Navaza, Takanori Matsuura, Kevin and others for ironing
out the wrinkles.
Have fun.
CCP4 core team
Dear All
can people confirm that the failing cif files only have one monomer description
in them. I have one example, but that contains two monomer descriptions.
Remove one of the and coot successfully reads the file.
Charles Ballard
CCP4
On 9 Jun 2010, at 14:34, Yahui Yan wrote:
> He
f CPU==AMD then stop. A number of years
ago somebody published how to remove this from the code, and more recently
intel lost a restrictive practice law case over it. So hopefully it will go
away.
Charles Ballard
CCP4
ps- a lot of ccp4 is highly io dependent, so fast disks with decent cache can
Dear All. A bit of publicity for a CCP4 workshop at the ACA. Garib Murshudov
and Paul Emsley are giving talks. Ronan Keegan, Stuart McNicholas and myself
will also be there giving overviews of the suite and CCP4MG (in it's new QT
guise)
Charles Ballard
CCP4
WK4: Getting the Most out o
Of course that should be 6.1.3 in the title. 6.1.13 is a pre-release on
the ftp site and aims to update clipper to 2.1 and buccaneer to 1.30.
The integrety of 6.1.13 is not guaranteed at this point
Charles
From: CCP4 bulletin board [mailto:ccp...@jiscmail.ac.uk
Dear All
Prompted by Ben on ccp4-dev.
CCP4 6.1.3 is on the ccp4 downloads and ftp sites. This is a bug fix
release, but does include updates of pointless and ipmosflm/imosflm.
Charles
Charles Ballard
CCP4
On 26 Feb 2010, at 19:31, Jonathan Marvin Caruthers wrote:
All:
Can anyone help me out here? I'm trying to get Molrep to run but
it seems to be crashing while trying to open some file after it's
done the rotation function search. I'm getting the
Dear All
hopefully there will be a live stream of this years events (weather permitting
as the UK is suffering travel restrictions due to snow and ice) at
http://extrplay.dl.ac.uk/
the session links should go live about 15 minutes before the session begins
Charles Ballard
CCP4
--
Scanned by
Hi
yes, it will. If you go to the ftp site. ftp.ccp4.ac.uk you will find the
beta of 6.1.3 under ccp4/6.1.3-beta (or similar). It will actually be 6.1.3 we
are pretty happy with it
Charles Ballard
CCP4
-Original Message-
From: CCP4 bulletin board on behalf of Jürgen Bosch
Sent
Hi Fred
we have seen this before with some over optimisation in the logic. Is it a
roll your own installation or a ccp4 binary? Also, if you rolled your own,
what system and compiler.
Charles Ballard
CCP4
-Original Message-
From: CCP4 bulletin board on behalf of Vellieux Frederic
We cordially invite you to participate in this year's Study Weekend
at the East Midlands Conference Centre, University of Nottingham. The
annual CCP4 Study Weekend is a chance to shake off the post-New Year
torpor, and work hard and play hard with your fellow
crystallographers. Once again,
Of course that is "now" not "not". So please update to the latest
CCP4 goodness.
Thanks to various people for pointing that out
Charles
On 21 Aug 2009, at 10:03, Charles Ballard wrote:
Dear All
the downloads package should not be updated to correct this problem
Cha
Dear All
the downloads package should not be updated to correct this problem
Charles
On 20 Aug 2009, at 22:11, Brad Bennett wrote:
Hi all-
Thanks to Charles Ballard, who sent me an xplot driver file with
optimization turned off. Once I copied this into my /usr/local/
ccp4-6.1.2/bin folder
/CHANGESinV6_1.html
Thanks to all the developers and testers for their sterling work
Charles Ballard
CCP4
ps - For those of you on familiar with Clapham and the surrounding
area; Ingleborough Common and hill lie north of the town of Clapham
in the Yorkshire Dales A map and some photos are
http
Hi Leonard
Does the scratch area for the other user exist. Normally this is
$CCP4_SCR/
Charles Ballard
CCP4
On 9 Jun 2009, at 22:27, Leonard Thomas wrote:
I have ran into this problem before but cannot figure out how I
worked it out. I have setup ccp4-6.1.1 on a redhat enterprise
Dear All
for those of you who have ccp4 6.1.1 there is refmac 5.5.0088 on the
prerelease page
http://www.ccp4.ac.uk/prerelease/
plus on
ftp://ftp.ccp4.ac.uk/ccp4/6.1.1/updates
various bug fixes and tag.gz files of bug fixes and the refmac
updates for linux and os x
binary distributions
Dear All
this and other fixes are on the ccp4 problems pages
http://www.ccp4.ac.uk/problems.php
Charles Ballard
On 2 Mar 2009, at 16:50, Ronnie Berntsson wrote:
I have the same problem when running the latest ccp4 (6.1.1 on os
x, updated 1 hour ago via fink). Only way I managed to
(global) and your compiler version
(off list obviously)
Thanks
Charles Ballard
CCP4
On 23 Jan 2009, at 08:06, Nobuo OKAZAKI wrote:
Dear Bill,
Yes, the first problem I faced was precision. In double precision,
all of CLIPPER programs did not run. After that, I have used with
single
precision
Dear All
Packages downloaded since 10 am GMT will be missing the core suite,
and other elements.
This problem has now been fixed, and everything should be working
properly.
Sorry for any inconvenience
Charles Ballard
CCP4
firefox so far).
Charles Ballard
on behalf of the CCP4 team.
Dear All
the closing date for the study weekend registration is 15 December.
Details, registration at
http://www.cse.scitech.ac.uk/events/CCP4_2009/
Charles
Well, we were gearing up for a release tomorrow, but a major problem
with mmdb has come to light. We are moving to fix this and get
binaries on the ftp site. So please hold off until it is announced.
Charles Ballard
CCP4
Dear All
It is the last day for the £160 registration fee today! It goes up to
£200 tomorrow.
Info at usual place
http://www.cse.scitech.ac.uk/events/CCP4_2009/
Dear All
just to let you know that the fee for the study weekend goes up from
£160 to £200 on 22 November.
Details, registration etc at
http://www.cse.scitech.ac.uk/events/CCP4_2009/
Charles Ballard
CCP4
Dear All
the CCP4 servers (www.ccp4.ac.uk, cvs.ccp4.ac.uk, ftp.ccp4.ac.uk)
will be shutdown from 16:00 BST until Monday 27 due to electrical
supply upgrades at Daresbury Laboratory.
The ccp4bb, will not be effected.
Charles Ballard
CCP4
nce Centre, Nottingham University.
Saturday 3 Jan - Monday 5 Jan.
http://www.cse.scitech.ac.uk/events/CCP4_2009/
Look forward to seeing you there
Charles Ballard
CCP4
Dear All
CCP4 will have a stand at the IUCr meeting in Osaka, Booth No. 22.
Staff will be available for demonstrations, queries and problem
solving. Hope to see you there.
Charles Ballard
CCP4
Dear All
there is a slim 800 lb tarball at
ftp://ftp.ccp4.ac.uk/ccp4/6.1/ccp4-6.0.99d-src.tar.gz
this is to test the build and arrangement of files.
If you want balbes you will have to manually install PyXML (run the
setup.py in PyXML-... using "python setup.py build" followed by
"python s
There is a binary to slot over the existing installation, details here
http://www.ccp4.ac.uk/problems/mac_4_2.php#48
Charles
On 15 Apr 2008, at 10:49, Eva Kirchner wrote:
Dear ccp4bb readers,
when I'm trying to run Procheck in CCP4i or with "procheck xxx.pdb
'resolution' ", it starts, but
Dpto de Bioquímica, Facultad de Farmacia
Universidad de Santiago
15782 Santiago de Compostela
Spain
http://web.usc.es/~vanraaij/
On 26 Feb 2008, at 17:25, Charles Ballard wrote:
Right, if CCP4BB is to be archived on gmane, the list owner must
agree (and as that is me, it seems OK), and the list
of having to get people to register.
Charles Ballard
CCP4
Here is the web address for the streaming http://
extrplay.dl.ac.uk/
Stuart
Stuart Eyres
Media Services
Daresbury Laboratory
Tel: 01925 603344
400 souls in Leeds (UK) on the 3-5
January (2008) you had better hurry.
Charles Ballard on behalf of Shirley Miller and Damian Jones.
STRUCTURAL BIOLOGY OF WOUND HEALING
A 2 year postdoctoral position, funded by the French National
Research Agency, is available at the Institut de Biologie et Chimie
des Protéines in Lyon (www.ibcp.fr) to study the molecular mechanisms
of wound healing and to develop novel anti-scarring str
ere has been no movement
on the issue.
In the short term, if you are experiencing problems, it may be best
to subscribe from a different account.
Charles Ballard
CCP4
ps - this is bcc'ed to all the subscribed address, so apologies to
those who receive multiple copies.
On 22 Nov 2
egt. (Leeds, UK, 3-5
Jan. 2008)
More details at
http://www.cse.scitech.ac.uk/events/CCP4_2008/
Charles Ballard
CCP4
buffering of output (there will be some
performance penalty for this).
(Thanks to Marian Szebenyi for reporting this)
Charles Ballard
CCP4
On 29 Oct 2007, at 12:33, Justin Schmitz wrote:
Hello All!
I have a problem with the output there from CCP4 into the log files
on a dual-Core Intel Mac
Dear All
This is a reminder that the CCP4 webserver and ftp site will be going
down for essential maintenance to be carried out on the server room
They will go off line at 4pm BST (3 pm GMT).
Charles Ballard
Dear Colleagues
Please note the following important deadlines for the CCP4 Study
Weekend, which will be held at Leeds University from the 3rd-5th
January 2008...
(1) EARLY REGISTRATION FEES - the deadline for the first tier of
registrations for the Study Weekend is MONDAY 15th OCTOBER. I
Dear All
the ccp4 website and ftp site will be "off air" from 4pm BST on
Friday 12 October until Monday 15 October. This is to allow
necessary maintenance on the server room.
Happily, the ccp4bb mailing list and ccp4 e-mail address will not be
affected
Charles Ballard
CCP4
The CCP4 Study Weekend (3rd - 5th January 2008), University of Leeds
We cordially invite you to participate in this year's Study Weekend
at the University of Leeds. The annual CCP4 Study Weekend is a chance
to shake off the post-New Year torpor, and work hard and play hard
with your fellow
he .dmg of the suite has also been updated.
These binaries are statically linked against libifcore.
Charles Ballard
CCP4
On 6 Sep 2007, at 14:02, Derek Logan wrote:
Hi,
I've installed CCP4 on an Intel Mac running Mac OS X 10.4.10 using
the binary installer from the automati
Lecturer in Structural Biology
School of Biological Sciences
Auckland
Vacancy Number: A618-07L
Applications are invited for a tenured position as Lecturer in
Structural Biology. You should have state-of-the-art skills and a
publication record in structural biology, preferably in X-ray
crys
Check, thanks for the heads up. I have removed the eiichi_tsuiji
address from the list, which I guess was bouncing e-mails (miss
configured spam filtering perhaps). Interestingly, this was not one
of the 51 addresses being monitored.
We are running with automatic removal to try and redu
will be on hand to demonstrate some of the new and coming
attraction, such as MrBUMP, BALBES, PISA, CCP4MG, etc. Special Guest
appearances by CCP4 Fellow Paul Emsley (Dr. Coot).
See you there (or in a watering hole nearby)
Charles Ballard
CCP4
Ahh, yes. And this is the result of nearly 3 years of trying to
square our desire to release the libraries under as open a license as
possible, while the lawyers try and cover the organisation's backside
in case someone wants to sue. I believe an attempt was made to
ensure that third par
Pfizer Global Research in St. Louis currently has an opening for a highly motivated and talented protein crystallographer to join our Structural & Computational Chemistry Department. The successful candidate will become a member of a productive and innovative structure based drug design group, wor
Oops (and not object orientated programming either)
Science and Technology Facilities Council (STFC)
Charles
On 23 Mar 2007, at 11:56, Charles Ballard wrote:
Dear All,
Apologies, this is not MX related, but is important, especially if
you are an industrial user.
From the 1st April 2007
for many years to
come, however, all new legal agreements (including the CCP4 license)
will be with STFC.
Charles Ballard
CCP4, currently in CCLRC but soon to be in STFC.
MRC PROTEIN PHOSPHORYLATION UNIT
COLLEGE OF LIFE SCIENCES
UNIVERSITYOF DUNDEE, SCOTLAND
PROGRAMME LEADER, CELL BIOLOGIST WITH X-RAY CRYSTALLOGRAPHIC EXPERTISE
The Unit is seeking to recruit a cell biologist with X-ray
crystallographic expertise who will develop a structurally-based
pro
Dear All,
I have received several e-mails indicating that people are not
receiving the digests. Can people who are receiving the digests tell
me, so that I can try to figure out what is going on?
Thanks in advance
Charles Ballard
CCP4
Interestingly enough (or not as the case maybe), the CCP4 study
weekend now goes out as the January issue of Acta D in order to try
and raise the impact rating. Something to do with the scoring
working on a calendar year.
Charles
On 19 Feb 2007, at 10:50, Kevin Cowtan wrote:
J. Appl. Cr
archive from Daresbury, which will back date things to 1996 (many
years of elegant postings from EJD and others)
Charles Ballard
CCP4
Dear All,
OK, [ccp4bb] should be in place, and the default is to reply-to sender.
Charles
am assured that it is possible.
So, please forgive any problems that occur over the next few days/
weeks as we try and get everything together.
Charles Ballard
CCP4
ps - posting to ccp4bb@dl.ac.uk will still work as this address is
now an alias.
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