Dear Misha,
There is a program in ccp4 called contacts that will give you this information.
You can alter entry parameters to show you the relevant information.
I think you can also try PISA server from EMBL-EBI.
I reckon both these programs show you all distances and you may have to
manually
Dear All,
I have a ligand-protein complex and I wish to calculate different kinds of omit
maps (say, composite omit maps, simulated annealing maps, other unbiased fo-fc
maps ). I wish to omit the ligand and 3.5 angstrom 3D space around it. I have
tried phenix for this purpose but get this
Hi all,
I want to build a ligand that does not exist in reality (or be able to modify
an existing ligand as per choice). 1. JLigand in the ccp4 suite seems to work
only on java and gives me an “configuration problem” as an error message on my
Windows. I am new to this and unaware of how to
