Re: [ccp4bb] Alexey Vagin

I am very sad to hear this! Alexey was one of my favourites when I was in York, and I have had many lovely conversations with him. You are right, Eugene, his contributions have helped and will keep helping many crystallographers and methods developers. May his soul rest in peace! James Sent fr

Re: [ccp4bb] AW: [ccp4bb] Rmergicide Through Programming

Hello Frederic. Interesting. Have you got some reference on this to share? James  Dr James Foadi PhD Diamond Light Source Ltd. Diamond House Harwell Science and Innovation Campus Didcot Oxfordshire OX11 0DE United Kingdom office email: james.fo...@diamond.ac.uk alternative email: j.fo

Re: [ccp4bb] RMSD between unaligned structures

h the symmetry and unit cell origin constrain) by CSYMMATCH. Does it make sense to you? James  Dr James Foadi PhD Diamond Light Source Ltd. Diamond House Harwell Science and Innovation Campus Didcot Oxfordshire OX11 0DE United Kingdom office email: james.fo...@diamond.ac.uk alternative email:

[ccp4bb] RMSD between unaligned structures

ATCH). But I don't want the program that compute RMSD to align the two structures. Can you suggest what I should use? And, perhaps, what keywords I should adopt? Many thanks, in advance. James Dr James Foadi PhD Diamond Light Source Ltd. Diamond House Harwell Science and Innovatio

Re: [ccp4bb] wavelet application in CCP4

blockquote, div.yahoo_quoted { margin-left: 0 !important; border-left:1px #715FFA solid !important; padding-left:1ex !important; background-color:white !important; } Peter Main is retired. Julie works on different stuff now. I'm not aware of any application aside what Julie implemented at the e

Re: [ccp4bb] Blend not outputting dendogram

ing merged data from combination of datasets, before scaling (carried out by AIMLESS). Regards, James  Dr James Foadi PhD Diamond Light Source Ltd. Diamond House Harwell Science and Innovation Campus Didcot Oxfordshire OX11 0DE United Kingdom office email: james.fo...@diamond.ac.uk alternative e

Re: [ccp4bb] FW: [ccp4bb] Fwd: [ccp4bb] just out of totally idle curiosity ...

blockquote, div.yahoo_quoted { margin-left: 0 !important; border-left:1px #715FFA solid !important; padding-left:1ex !important; background-color:white !important; } I totally agree with you, Edward! James Sent from Yahoo Mail for iPhone On Wednesday, November 9, 2016, 5:02 pm, Edward Snell

Re: [ccp4bb] invalid dataset in BLEND

e in turn one wedge from them. There could be other reasons why files are rejected, but I need to look at one of your datasets to get moredetails. J  Dr James Foadi PhD Membrane Protein Laboratory Diamond Light Source Ltd. Diamond House Harwell Science and Innovation Campus Didcot Oxfordshire OX1

[ccp4bb] new Nature article on the R platform

gives scientists control of their own data analysis. | | | | View on www.nature.com | Preview by Yahoo | | | |   |   Happy New Year! J Dr James Foadi PhD Membrane Protein Laboratory Diamond Light Source Ltd. Diamond House Harwell Science and Innovation Campus Didcot Oxfordshire OX11 0DE United

Re: [ccp4bb] merging anisotropic datasets

learning from peoplewho have tried it. J  Dr James Foadi PhD Membrane Protein Laboratory Diamond Light Source Ltd. Diamond House Harwell Science and Innovation Campus Didcot Oxfordshire OX11 0DE United Kingdom office email: james.fo...@diamond.ac.uk alternative email: j.fo...@imperial.ac.uk

Re: [ccp4bb] Room temperature data collection

start exploring the new possibilities offered by modern synchrotrons. All the best, J   Dr James Foadi PhD Membrane Protein Laboratory Diamond Light Source Ltd. Diamond House Harwell Science and Innovation Campus Didcot Oxfordshire OX11 0DE United Kingdom office email: james.fo...@diamond.ac.u

Re: [ccp4bb] Today ...

Thank you, Phil! The same to you! J   Dr James Foadi PhD Membrane Protein Laboratory Diamond Light Source Ltd. Diamond House Harwell Science and Innovation Campus Didcot Oxfordshire OX11 0DE United Kingdom office email: james.fo...@diamond.ac.uk alternative email: j.fo...@imperial.ac.uk

Re: [ccp4bb] Rpim and how its related to anomalous signal

addition of the second dataset, quite certainly some form of non-isomorphism. J   Dr James Foadi PhD Membrane Protein Laboratory Diamond Light Source Ltd. Diamond House Harwell Science and Innovation Campus Didcot Oxfordshire OX11 0DE United Kingdom office email: james.fo...@diamond.ac.uk

Re: [ccp4bb] adding gaussian noise to an mtz data column

nd standard dev 1 > mtz$reflections$Fnew <- >newF > ># Replace new column >writeMTZ(mtz,"new_test.mtz") > > # Write modified file with a different name If you a

[ccp4bb] rebatch abort

las.so.3gf.0 2b06abef9000-2b06abefc000 rw-p 00:00 0 7fffd6dd9000-7fffd6df4000 rwxp 00:00 0 [stack] 7fffd6df4000-7fffd6df7000 rw-p 00:00 0 7fffd6dff000-7fffd6e0 r-xp 00:00 0 [vdso] ff600000-ffffff60

Re: [ccp4bb] failed compilation for Pointless

that some of it involved fftw, I suspect the real problem in my failed previous attempt. I can now run the full Pointless without problems. J Dr James Foadi PhD Membrane Protein Laboratory Diamond Light Source Ltd. Diamond House Harwell Science and Innovation Campus Didcot Oxfordshire OX11 0DE

Re: [ccp4bb] issues with idiffdisp

It doesn't work outside the GIU either. I should tell that I have my CCP4 install compiled from source, it is not a binary installation. Also that I use ActiveTcl 8.4 and my Linux platform is Ubuntu 8 (64 bit). I wonder whether this is a Tcl version issue... J Dr James Foadi PhD Mem

[ccp4bb] issues with idiffdisp

. . . . . . . . I know nothing about Tcl, so I don't know how to solve this issue. Any idea on this from somebody else would be very much appreciated. J Dr James Foadi PhD Membrane Protein Laboratory Diamond Light Source Ltd. Diamond House Harwell Science and Innovation Camp

Re: [ccp4bb] CAD on multi-record file

batch numbers BATCH 1 TO 100 PNAME NONISO XNAME Insulin_01 DNAME Dataset_01 END Best wishes, J Dr James Foadi PhD Membrane Protein Laboratory Diamond Light Source Ltd. Diamond House Harwell Science and Innovation Campus Didcot Oxfordshire OX11 0DE United Kingdom office email: james.fo...@diamond.

[ccp4bb] CAD on multi-record file

into mtzutils, but I don't see how to do it. Anyone for help? J Dr James Foadi PhD Membrane Protein Laboratory Diamond Light Source Ltd. Diamond House Harwell Science and Innovation Campus Didcot Oxfordshire OX11 0DE United Kingdom office email: james.fo...@diamond.ac.uk alternative email: j.fo...@imperial.ac.uk web page:

Re: [ccp4bb] failed compilation for Pointless

egrep... /bin/grep -E checking for ANSI C header files... yes checking for a BSD-compatible install... /usr/bin/install -c checking for ccp4_errno in CCP4... no configure: error: Failed to find ccp4 libs . . . J Dr James Foadi PhD Membrane Protein Laboratory Diamond Light Source Ltd. Diamond House

[ccp4bb] failed compilation for Pointless

seems odd, as I have declared all CCP4 environment variables, and could check that the file is actually where it should be. Anyone could help me with this? J Dr James Foadi PhD Membrane Protein Laboratory Diamond Light Source Ltd. Diamond House Harwell Science and Innovation Campus Didcot Oxfords

[ccp4bb] imosflm STARTDIR

RTDIR [pwd] Perhaps somebody else has written about this, but if this is the case, I have missed the thread. Can somebody help me with this? J Dr James Foadi PhD Membrane Protein Laboratory Diamond Light Source Ltd. Diamond House Harwell Science and Innovation Campus Didcot Oxfordshire OX1

Re: [ccp4bb] SCALA failed message

Thank you Graeme. I have installed ccp4 6.1.1 and ran the same job on SCALA succesfully. J Dr James Foadi PhD Membrane Protein Laboratory Diamond Light Source Ltd. Diamond House Harwell Science and Innovation Campus Didcot Oxfordshire OX11 0DE United Kingdom office email: james.fo

[ccp4bb] SCALA failed message

ay, I had run this before with similar data (up to 4 runs), and had never this problem. Thank you! J Dr James Foadi PhD Membrane Protein Laboratory Diamond Light Source Ltd. Diamond House Harwell Science and Innovation Campus Didcot Oxfordshire OX11 0DE United Kingdom office email: james.fo...@diamond.ac.uk alternative email: j.fo...@imperial.ac.uk web page: