On 25 Oct 2012, at 00:45, Zhijie Li zhijie...@utoronto.ca wrote:
This is especially useful when the program does not give you options on
residue ranges (for example, COOT SSM superpose).
It does but you need to use the function superpose-with-atom-selection from the
You can use superpose LSQKAB to fit various residues by number..
Eleanor
On 24 Oct 2012, at 23:59, WENHE ZHONG wrote:
Dear members,
I have one difficult task on hand and would like to ask for your advice.
I want to superpose two enzyme structures just based on several residues
(e.g. 5
On Thu, 2012-10-25 at 11:34 +0100, Eleanor Dodson wrote:
You can use superpose LSQKAB to fit various residues by number..
Eleanor
Eleanor is absolutely right.
Coot has Calculate-LSQ superpose option for that.
I feel what needs to be reiterated is that CCP4 superpose uses SSM -
secondary
Dear members,
I have one difficult task on hand and would like to ask for your advice.
I want to superpose two enzyme structures just based on several residues
(e.g. 5 residues) which we are interested in. But these two structures do
not have similarity for overall structures. In this case, I
the program does not give you options on residue ranges (for example, COOT
SSM superpose).
Zhijie
From: WENHE ZHONG
Sent: Wednesday, October 24, 2012 6:59 PM
To: CCP4BB@JISCMAIL.AC.UK
Subject: [ccp4bb] CCP4superpose_only superpose interesting residues
Dear members,
I have one difficult task on hand
Subject: Re: [ccp4bb] CCP4superpose_only superpose interesting residues
Hi Wenhe,
Superpose allows you to specify residue (as well as Ca/main chain/side chain)
ranges. Also in COOT you can select the range of residues used in the LSQ
superpose calculation.
For superposing parts of the proteins
