Re: [ccp4bb] Cation-channel pore representation for solvent accessible area

2019-01-29 Thread Ashok Nayak
> > Hi Everyone, > Thank you very much for all your inputs. > The easiest way that worked for me was to take the coot dot_surface output > and edit it to a .bild file as per Elaine's suggestion. > Coot dot surface output: > 243.69110 246.85279 354.96833 0.448000.471680.8 >

Re: [ccp4bb] Cation-channel pore representation for solvent accessible area

2019-01-26 Thread Oliver Smart
Ashok, If you are still persisting with the original HOLE rather than the coot HOLE clone or Caver: The HOLE input card you need is 'endrad' as described at http://www.holeprogram.org/doc/#_example_application an alternative is to edit the .sph output file. Please contact me directly if you

Re: [ccp4bb] Cation-channel pore representation for solvent accessible area

2019-01-23 Thread Arunabh Athreya
board on behalf of Ashok Nayak Sent: 23 January 2019 01:31:25 To: CCP4BB@JISCMAIL.AC.UK Subject: [ccp4bb] Cation-channel pore representation for solvent accessible area Hi Board Members, I need to draw the solvent accessible surface representation figure for a cation channel pore from the channel coord

Re: [ccp4bb] Cation-channel pore representation for solvent accessible area

2019-01-22 Thread Paul Emsley
On 22/01/19 20:01, Ashok Nayak wrote: > > I need to draw the solvent accessible surface representation figure > for a cation channel pore from the channel coordinates. The Hole > program and the documentation is already handy to obtain the 2D-plot > (pore radius vs channel coordinate) and the

[ccp4bb] Cation-channel pore representation for solvent accessible area

2019-01-22 Thread Ashok Nayak
Hi Board Members, I need to draw the solvent accessible surface representation figure for a cation channel pore from the channel coordinates. The Hole program and the documentation is already handy to obtain the 2D-plot (pore radius vs channel coordinate) and the coloured dot surface but is