Dear Chen
you can use the Matrix Copy command in pymol to align maps. Check the pymol
wiki for details and an example how to use:
http://pymolwiki.org/index.php/Matrix_copy.
Best regards
Florian
Date:Thu, 21 Mar 2013 23:29:31 -0400
From:Chen Zhao chenzhaoh...@gmail.com
Subject: Map
On Thu, 2013-03-21 at 23:29 -0400, Chen Zhao wrote:
Dear all,
Does anybody know some softwares for aligning electron density maps?
I tried transforming map by SQL model fit extension in COOT, which
turned out to be not working: the map it transformed is the one
supposed to be fixed. If I
Dear all,
Does anybody know some softwares for aligning electron density maps?
I tried transforming map by SQL model fit extension in COOT, which turned
out to be not working: the map it transformed is the one supposed to be
fixed. If I switch the moving model with the reference model, I only
If I understand your question correctly, you have a couple of atoms which you
could align to get the rotation translation then you can use these values
with maprot (CCP4) or mama (USF) to actually superimpose maps.
Jürgen
On Mar 21, 2013, at 11:29 PM, Chen Zhao wrote:
Dear all,
Does anybody
Hi Chen,
I also tried the Superpose maps utility in PHENIX, however, since they
are nucleic acid structures, it seems that the sequences cannot be
recognized.
I'm not aware of such problem. If it does exist and you want me to fix it
please send me the files and I'll have a look.
Pavel
