Re: [ccp4bb] ShelXL and Coot

2012-05-08 Thread Paul Emsley
Hi Kalyan, If you are unable to read the .res file then I suspect that you had and END without an HKLF. Thanks to Tim this problem has been fixed now (r4161) if you're feeling adventurous. As for the PDB file, yes indeed, Coot will choke if you try to feed it atoms without residue names.

Re: [ccp4bb] ShelXL and Coot

2012-05-07 Thread Tim Gruene
-BEGIN PGP SIGNED MESSAGE- Hash: SHA1 Dear Kalyan, the reason why you cannot read in the .res-file is that you don't have RESI-cards. They are required by coot. For the same reason your PDB-file does not contain any information that would allow coot to refine the coordinates. As far as

Re: [ccp4bb] ShelXL and Coot

2012-05-06 Thread George Sheldrick
You probably need to insert the space group name into the CRYST1 record. Tthe version of SHELXL that I am planning to release this summer already deduces the space group name from the LATT and SYMM cards and puts it there. If you read the .res file into Coot instead of the .pdb, Coot can

Re: [ccp4bb] ShelXL and Coot

2012-05-06 Thread Paul Emsley
On 05/05/12 23:07, Badsha Mukherjee wrote: Hi, I am unable to open the output pdb file from ShelXL in Coot. Any suggestion will be appreciated. Well, it's hard to know what's the problem without details - the console should say something. But when handling the output of shelxl, I suggest

Re: [ccp4bb] ShelXL and Coot

2012-05-06 Thread Kalyan
Hi George: I am facing the same problem reading .pdb file generated from shelxl in coot. I have tried inserting the space group name in the CRYST1 record but still unable to read the file. COOT is able to read the .res and .fcf file and I can see the map but COOT is not allowing me to build

Re: [ccp4bb] ShelXL and Coot

2012-05-05 Thread Sean Seaver
Dear Badsha, Is it possible to share the pdb such as by linking to it using dropbox, google docs, etc..? It's hard to trouble shoot the issue without seeing the file. Thanks, Sean P212121 http://store.p212121.com/