Dear Paul,
Thanks for your reply.
Because I have some code in ~/.coot related to the graphic, when I ran
coot in --no-graphic mode, coot would crash. If I delete the ~/.coot
file, coot will be ok at no-graphic mode.
Another question:
Many functions in coot, such as refine-zone or
On 23/11/12 11:40, Armando Albert wrote:
Dear Paul,
2, And is there any option to prevent coot auto-loading ~/.coot file?
No. Why would you want to do that?
You may want to open a different session in the same directory and not spoil
the one you are using for refinement
If you want to
On 25/11/12 11:53, Qixu Cai wrote:
Dear Paul,
Thanks for your reply.
Because I have some code in ~/.coot related to the graphic, when I ran
coot in --no-graphic mode, coot would crash.
fail with an error message I hope you mean.
If I delete the ~/.coot file, coot will be ok at no-graphic
Dear Paul,
Sorry to bother you again.
In the scheme script you provided, it seems that the
imol-refinement-map is not set. Is it necessary to add this code:
(set-imol-refinement-map imol-map) to the script?
Thanks for your reply.
Best wishes,
Q. Cai
On 11/23/2012 07:32 PM, Paul Emsley
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Dear Q. Cai,
ad 1) maybe Paul knows better, but 'stepped refine' sounds to me like
coot refines step by step and displays the steps inbetween, which
means that the combination with no-graphic mode makes little sense,
doesn't it? You can run refmac5
On 23/11/12 08:54, Qixu Cai wrote:
I have some problems about coot.
1, How to run the Extensions -- All molecule -- Stepped refine at
no-graphic mode of coot?
(let ((imol (read-pdb coot-download/3rso.pdb))
(imol-map (make-and-draw-map coot-download/r3rso-refmac.mtz
FWT PHWT 0 0)))
Dear Paul,
2, And is there any option to prevent coot auto-loading ~/.coot file?
No. Why would you want to do that?
You may want to open a different session in the same directory and not spoil
the one you are using for refinement
Armando
I am out of the lab
El 23/11/2012, a las 12:32,
