Re: [ccp4bb] Data reprocessing

I second Eleanor's suggestions. In fact I would hope the PDB made re-depisitions known to the original authors. I had an incident recently where someone (I believe possibly a student) had used one of my structures for MR but then did the deposition as a re-refinement (because they used it as MR

Re: [ccp4bb] Data reprocessing

Did you make the original deposition ? If so the pdb accepts re-depositions... If it was done by someone else I guess the courteous thing is to notify them and maybe talk to the pdb- redo team? Cheers Eleanor On Sat, 27 Jan 2024 at 01:53, Lucas Souza wrote: > Dear all, > > After auditing and

[ccp4bb] Data reprocessing

Dear all, After auditing and reprocessing a deposited structure with clear processing mistakes (missing/wrong residues and ligands with evident density) prior to some analysis that are going to be published, what should be done? Re-deposit the structure with a "reprocess" flag? Reopen the PDB

Re: [ccp4bb] Identify mysterious density in CryoEM map

Thanks Pavel! I tried, choosing Fobs and sigmaF as input variables, but sadly it returned an error message (see below). I don’t know if anything can be done to adapt the mtz file to their server. So I emailed them and will share if I get some feedback. > On Jan 26, 2024, at 2:45 PM, Pavel

Re: [ccp4bb] Identify mysterious density in CryoEM map

Hello Jan, you can convert your cryo-EM problem into crystallographic one by FT'ing your map into a set of structure factors "Fobs" and then giving the atomic model and MTZ with these "Fobs" to CheckMyBlob. If it's cool enough, it should not make much difference if your "Fobs" come from X-ray or

[ccp4bb] Identify mysterious density in CryoEM map

Dear all, We’re working on an unknown ligand density in our CryoEM structure. Is there a program that uses deep-learning to fill uncharacterized electron density similar to Checkmyblob but for CryoEM maps? Thanks, Jan

[ccp4bb] CBMS Structural Biology Workbench - January 29th to February 1st

Dear All You are cordially invited to join the CBMS Structural Biology Workbench talks, in specific the Joint Session Lectures. To register: https://bnl.zoomgov.com/meeting/register/vJIscO2gqzIrG34C30-fi43VRwl0DudNzbw Monday January 29 at noon (EST)   Overview of the CBMS Program  -

[ccp4bb] Structural Biology Jobs at GSK

Dear All, We currently have job openings for Structural Biologists to join our expanding team at the GSK UK Structural Biology Center

[ccp4bb] Postdoctoral and Research Tech positions in Pancera lab, Seattle, WA

Postdoctoral and Research technician positions are available in the Pancera lab at Fred Hutch in Seattle, WA. The Pancera lab, within Fred Hutch’s Vaccine and Infectious Disease Division, works towards the development of safe and effective vaccines against HIV-1, malaria and other pathogens.

[ccp4bb] 10th CCP-EM Spring Symposium 30th April - 2nd May 2024

Dear all, We are pleased to announce the 10th Annual CCP-EM Spring Symposium! The conference aims to provide a forum to highlight state-of-the-art developments in computational cryoEM and related themes, as well as showcasing outstanding recent biological applications. We aim to promote an