Re: [ccp4bb] Improve diffraction ...any ideas?

2013-05-28 Thread Joseph Cockburn
Hi Urmi, When you say antibody you mean Fab fragments? If so, bear in mind that Fab fragments can be quite flexible about the region inbetween the variable and constant domains, which may be detrimental to the quality of your crystals ... in this case, further to the advice of others on here, you

[ccp4bb] AW: [ccp4bb] Improve diffraction ...any ideas?

2013-05-24 Thread Herman . Schreuder
! Herman -Ursprüngliche Nachricht- Von: CCP4 bulletin board [mailto:CCP4BB@JISCMAIL.AC.UK] Im Auftrag von Urmi Dhagat Gesendet: Freitag, 24. Mai 2013 04:21 An: CCP4BB@JISCMAIL.AC.UK Betreff: [ccp4bb] Improve diffraction ...any ideas? Hi, I am working on a protein antibody complex which

Re: [ccp4bb] Improve diffraction ...any ideas?

2013-05-24 Thread Patrick Shaw Stewart
Use random microseeding to pick up new conditions, and work with those. See http://www.douglas.co.uk/mms.htm and http://www.douglas.co.uk/MMS_proc.htm for theory, references and practical details On 24 May 2013 03:20, Urmi Dhagat udha...@svi.edu.au wrote: Hi, I am working on a protein

Re: [ccp4bb] Improve diffraction ...any ideas?

2013-05-24 Thread Patrick Shaw Stewart
Rajiv, I don't quite get your idea. Once the crystals of the single proteins have grown, you can't soak the other protein in, can you? Or do you mean something else? Umri, if you do get crystals of one of the components it's well worth trying cross-seeding into the complex, again using random

Re: [ccp4bb] Improve diffraction ...any ideas?

2013-05-24 Thread Oganesyan, Vaheh
I think this is an advice not to follow. Vaheh -Original Message- From: CCP4 bulletin board [mailto:CCP4BB@JISCMAIL.AC.UK] On Behalf Of Rajiv K Bedi Sent: Friday, May 24, 2013 1:44 AM To: CCP4BB@JISCMAIL.AC.UK Subject: Re: [ccp4bb] Improve diffraction ...any ideas? Dear Umri

Re: [ccp4bb] Improve diffraction ...any ideas?

2013-05-24 Thread Rajiv K Bedi
I think you can soak another protein into a protein crystal if it is small enough to pass through water channels, I guess. More info: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2483499/

Re: [ccp4bb] Improve diffraction ...any ideas?

2013-05-24 Thread Patrick Shaw Stewart
Hello Scott Setting up rMMS by hand works fine, but it's a bit slow and uses more protein and (sometimes much more important!) more seed stock. We recommend using a Hamilton syringe, preferably with a rounded needle, to set up by hand. 1.0 protein + 0.7 reservoir solution + 0.3 seed stock works

Re: [ccp4bb] Improve diffraction ...any ideas?

2013-05-23 Thread Rajiv K Bedi
Dear Umri, I think the main problem is co-crystallization. What I would do is crystallize protein and antibody separately and then soak protein crystals into reservoir solution containing antibody or vice versa. And do try to get crystals from different conditions which may alter the space