Re: [ccp4bb] The phase problem

2014-11-08 Thread xaravich ivan
Hi Giulliana, What is the percent identity of your best search model with your target? At what resolution does your crystal diffract? If you use PHASER without choosing the space group, it might help find you a solution in a different space group than you expect. There are also some tricks on

Re: [ccp4bb] The phase problem

2014-11-06 Thread Fabio Dall'Antonia
Hi everyone, I'd like to add that tunable synchrotron beamlines are tending more and more to support Sufur-SAD on native proteins - in particular, there are dedicated long-wavelength beamlines (like I23 at Diamond). And if radiation damage is the main concern, availability of multiple crystals

[ccp4bb] The phase problem

2014-11-05 Thread Giulliana Rangel
Dear all, I would like to known if someone could help me with some idea about the phase problem. I am a beginner in crystallography and the first time I tryed to solve the structure by Molrep, amore, mr. Bump and I didnt find anything for molecular replacement. Thus, currently I've tried to

Re: [ccp4bb] The phase problem

2014-11-05 Thread Nicholas Larsen
Screen for heavy atoms with native gel. Run protein with variety of heavy atoms. If you see a discreet shift in the native gel, then you will get derivative. If you don't see a shift, don't bother soaking. It's worked for me every time. Also, ammonium sulfate will mess up your heavy atoms, so

Re: [ccp4bb] The phase problem

2014-11-05 Thread Andreas Förster
Hi Giuliana, if your crystal diffracts to 3 Å or better and you have at least one Cys/Met per 25 residues, put it on the home source and collect until the sulfur signal rises above the noise. Then solve by SAD. http://www3.imperial.ac.uk/xraycrystallography/learning/sulfur_sad Andreas

Re: [ccp4bb] The phase problem

2014-11-05 Thread Alessandro Nascimento
Hi Giulliana, I would (re)check for issues during the assignment of the space group prior to MR. Many people in the list can help you with this if you provide additional information regarding your data. In case you have a structure that can not be solved by MR, I would give a chance for the