Hello,
I am trying to use Coot to change the numbering of the residues in a PDB file.
The structure contains six semi-identical lettered chains, currently described
as D through I. For some reason, the feature in coot that should allow me to
change them to A-F, as well as change the residue
On 28/06/11 12:13, Katrina L Molland wrote:
I am trying to use Coot to change the numbering of the residues in a PDB file.
The structure contains six semi-identical lettered chains, currently described
as D through I. For some reason, the feature in coot that should allow me to
change them to
Hi,
worth to try moleman
- %moleman
Choose READ_pdb_file
- your_pdbfile.pdb
Choose AUTO_chain_segid
Choose WRITE_pdb_file
- out.pdb
Or the tedious NEDIT way
Open your pdb.file in nedit, mark ONLY the chain ID column - put your cursor
before the first X, press [Shift][Ctrl], go the the last X
Dear Katie,
the menu entry Calculate - Change Chain ID works fine, although in the
current version (0.6.1), you cannot use the preselected Whole Chain radio
button but have to explicitly tell coot the residue range 'from' - 'to'.
Tim
On Tue, Jun 28, 2011 at 07:13:56AM -0400, Katrina L Molland
