[ccp4bb] protein oligomer

2020-07-19 Thread 张士军
Dear all: Any ideas to decrease protein polymer formation? my protein was easy to form oligomers and precipitation when do purification,I have tried add glycerol and DTT,both didn't work. Does anyone has experience to avoid it happening. Thanks! Best Regards ###

Re: [ccp4bb] protein oligomer

2020-07-19 Thread Sorin Draga
I am not sure what you mean by polymer formation. Presuming that you have optimized your protein concentration, pH and salt concentration, you could try arginine as an anti-aggregation agent in your purification (I presume you do FPLC). Have a look at chaotropic agents used in protein purification,

Re: [ccp4bb] protein oligomer

2020-07-19 Thread S. Mohanty
Keep the protein concentration low during purification steps along with using other anti-aggregation agent/s. Make sure that the pH at which you are purifying is not close to the pI of the protein. Until completely purified, all purification steps should be performed in a cold room if it is a so

Re: [ccp4bb] protein oligomer

2020-07-19 Thread Nikolay Dobrev
It really depends from the nature of the protein and if is oligomerizing/agregating/forming polymers if any of this is reversible. On the other side if you are working with one of the fibril forming protein it will require optimizaiton on its on as they will form naturally polymers. Do you obs

Re: [ccp4bb] Sad News

2020-07-19 Thread Fischmann, Thierry
It’s with much sadness that I learn of Ward’s passing. To add to Bob’s message: Ward was elected as Chair of the IMCA’s supervisory Board. He lead us through some difficult decisions, and always with a great sense of humor Thierry > On Jul 18, 2020, at 7:36 AM, Sweet, Robert > <27e0eb9d2

Re: [ccp4bb] Protocol for bacmid transformation in E.coli

2020-07-19 Thread Archit Garg
Hi Digant, As Artem mentioned, it's a fairly simple process and it's similar to plasmid transformation in E. coli. We work extensively with insect cells in our lab, though we have never used electroporation, the normal chemical transformation works quite well. Although bacmid requires careful handl

[ccp4bb] [refmac developers] unrestrained anisotropic

2020-07-19 Thread Bernhard Rupp
Hi Fellows, Q for the Refmac cognosci: Just curious: If I run unrestrained anisotropic refi on 1 A data, some barely supported ligands display insane and physically impossible ADPs, worthy of the ORTEP of the century. As cigars penetrate discs, it seems that Hirschfeld criteria on aniso A

Re: [ccp4bb] Sad News

2020-07-19 Thread James Holton
Ward was the Program Official for all my grants!  My life will not be the same without him.  He was always so supportive and helpful with advice on how to navigate the sometimes convoluted system that is the NIH.  From the Protein Structure Initiative to today his hard work has made possible my

Re: [ccp4bb] protein oligomer

2020-07-19 Thread 张士军
Dear: The protein was purified in 4 degree, and the expression level is low, so the aggregation is not by high concentration; the buffer pH is 7.5 which is not colse to the PI 8.6. It should be a dimer when function, but it was aggregated when negative staining. Maybe I could try to add arginin