[ccp4bb]

Hi Yarrow, That solution looks very reasonable to me. If you are worried about the size of your doughnut-hole, look at the packing of the latest structure we solved. :) https://dl.dropboxusercontent.com/u/5116503/4J05.png best -Bjørn -- Bjørn Panyella Pedersen Macromolecular Structure Group

Re: [ccp4bb] Trouble with conversion from HKL to CCP4 file format

://xds.mpimf-heidelberg.mpg.de/html_doc/xdsconv_parameters.html#MERGE= hth -Bjørn -- Bjørn Panyella Pedersen Macromolecular Structure Group University of California, San Francisco On 03/26/2014 01:39 PM, Lada Sycheva wrote: Dear CCP4BB users, I am trying to convert the XDS_ASCII.HKL file to ccp4

Re: [ccp4bb] AW: [ccp4bb] possible twinning issue in P4212 / I422

-Ursprüngliche Nachricht- Von: CCP4 bulletin board [mailto:CCP4BB@JISCMAIL.AC.UK mailto:CCP4BB@JISCMAIL.AC.UK] Im Auftrag von Bjørn Panyella Pedersen Gesendet: Dienstag, 3. Juni 2014 21:01 An: CCP4BB@JISCMAIL.AC.UK mailto:CCP4BB@JISCMAIL.AC.UK Betreff: [ccp4bb] possible twinning issue

Re: [ccp4bb] Lowest resolution you can do MR with

parameters (scripting is useful here!). Good luck :) -Bjørn Muthiah wrote: What is the lowest resolution one can try to do molecular replacement with? I have a 3.6 angstroms resolution data for a protein-DNA complex and wondering whether I can try MR to see the density for DNA. -- Bjørn Panyella

Re: [ccp4bb] Anisotropic Diffraction Examples

The H+-ATPase from A. thaliana had anisotropic diffraction (ca. 3.6/5.5Å). This could be explained by the crystal packing and more specifically the detergent micelles in the packing. See: Pedersen BP, Buch-Pedersen MJ, Morth JP, Palmgren MG, Nissen P. Crystal structure of the plasma membrane

Re: [ccp4bb] Detergent/lipid crystal diffraction pattern?

explanations. :) hth -Bjørn -- Bjørn Panyella Pedersen, PhD Postdoc Macromolecular Structure Group Dept. of Biochemistry and Biophysics University of California, San Francisco MC2240, 600 - 16th Street S414 San Francisco, CA 94158-2517 Phone: +1 415-476-3937 E-mail: bj...@msg.ucsf.edu http

Re: [ccp4bb] Map correlation coefficient

Hi Maher My version of Overlapmap reports the CC for main chain and for side chain in the log-file (per residue and overall). Have you looked there? -Bjørn On 2011-04-21 14:25, Maher Alayyoubi wrote: Hi Everybody, I posted a question earlier on the bulletin regarding how to calculate the map

Re: [ccp4bb] mtz2various command line R-free label?

.ac.uk/html/mtz2various.html). hth -Bjørn -- Bjørn Panyella Pedersen Macromolecular Structure Group Dept. of Biochemistry and Biophysics University of California, San Francisco On 2011-04-27 09:58, Kelly Daughtry wrote: Hello all, I am been unsuccessful in converting my mtz file into cns format

Re: [ccp4bb] Zotero style

I made one some time ago (attached). It's not perfect (missing definitions for e.g. books) but works well for article-references. -Bjørn -- Bjørn Panyella Pedersen Macromolecular Structure Group Dept. of Biochemistry and Biophysics University of California, San Francisco On 2011-05-04 05:32

Re: [ccp4bb] mutation and minimization

you are making only a minor change it should work just fine (quickly and dirtily as asked for :)). hth -Bjørn -- Bjørn Panyella Pedersen Macromolecular Structure Group Dept. of Biochemistry and Biophysics University of California, San Francisco On 2011-05-12 08:35, Andreas Förster wrote: Hey

Re: [ccp4bb] Nanodrop versus Nanophotomter Pearl versus good old Bradford.

a fixed pathlength. 1ul loaded will give the same result as 2ul loaded. hth -Bjørn -- Bjørn Panyella Pedersen Macromolecular Structure Group Dept. of Biochemistry and Biophysics University of California, San Francisco

Re: [ccp4bb] combining phase information from a Se-Met and Hg SAD data sets

, please reply. Arnon -- Bjørn Panyella Pedersen, PhD Postdoc PUMPKIN, Centre for Membrane Pumps in Cells and Disease University of Aarhus, Dept. Molecular Biology Gustav Wieds Vej 10C DK-8000 Aarhus C, Denmark Phone: +45 89425261 E-mail: bj...@bioxray.au.dk http://www.bioxray.au.dk

[ccp4bb] PhD Scholarship: Structural and functional studies of eukaryotic membrane proteins involved in cholesterol and sugar transport.

PhD Scholarship: Structural and functional studies of eukaryotic membrane proteins involved in cholesterol and sugar transport. A PhD position is available in membrane protein biochemistry and X-ray crystallography in the newly established research group of Dr. Bjorn P Pedersen at the

[ccp4bb] Post Doc position available in Denmark

Postdoctoral position in Structure of Sterol Transporting Membrane Proteins at Aarhus University, Denmark. online posting: http://www.pedersenlab.dk/source/bp_lab_postdoc_position.pdf The Pedersen group is looking for a highly skilled and motivated postdoc with an interest in working on

Re: [ccp4bb] Post Doc position available in Denmark

Just a brief reminder of the following open position. Deadline is in ten days. All the best, -Bjørn From: CCP4 bulletin board on behalf of Bjørn Panyella Pedersen Sent: Monday, August 13, 2018 13:31 To: CCP4BB@JISCMAIL.AC.UK Subject: [ccp4bb] Post Doc

[ccp4bb] Postdoc position, Sugar Transporting Membrane Proteins (Denmark)

Dear colleagues, Please pass this along to anyone who might be interested. Thanks! /Bjørn Postdoctoral position in Structure of Sugar Transporting Membrane Proteins at Aarhus University, Denmark. online posting: http://tiny.cc/MBG_postdoc We are looking for a highly skilled and motivated

[ccp4bb] Postdoc position, Sugar Transporting Membrane Proteins (Denmark), repost

Dear colleagues, Repost of our postdoc position. Deadline is in 3 days. Please pass this along any one who might be interested. Thanks! /Bjørn Postdoctoral position in Structure of Sugar Transporting Membrane Proteins at Aarhus University, Denmark. online posting: http://tiny.cc/MBG_postdoc

[ccp4bb] Postdoc position, Sugar Transporting Membrane Proteins (Denmark), [repost]

Dear colleagues, Please pass this along any one who might be interested. Thanks! /Bjørn Postdoctoral position in Structure of Sugar Transporting Membrane Proteins at Aarhus University, Denmark. online posting: http://tiny.cc/MBG_postdoc We are looking for a highly skilled and motivated

[ccp4bb] PhD position (Denmark), Structural biology with a focus on sterol uptake mechanisms

Dear colleagues, We have a open PhD position my my group. Please pass along to anyone who might be interested. Thanks! Deadline is July 31st. /Bjørn STRUCTURAL AND FUNCTIONAL STUDIES of eukaryotic membrane proteins involved in sterol transport

[ccp4bb] PhD position (Denmark), Structural biology with a focus on sterol uptake mechanisms

Dear colleagues, Please pass this along any one who might be interested. Thanks! /Bjørn STRUCTURAL AND FUNCTIONAL STUDIES of eukaryotic membrane proteins involved in sterol transport (http://pedersenlab.dk/source/phd_position_2020.pdf) A PhD

[ccp4bb] Postdoc position, Plant Hormone Transporting Membrane Proteins (Denmark)

Dear colleagues, I have an open postdoc position funded by the ERC (details below). Please pass this along to anyone who might be interested. Thanks! /Bjørn Postdoctoral position in Structure of Plant Hormone Transporting Membrane Proteins at Aarhus University, Denmark.

[ccp4bb] PhD position (Denmark), Structural biology with a focus on metabolite uptake

Dear colleagues, Please pass this open PhD position along to anyone who might be interested. Thanks! jobRxiv link: https://bit.ly/3Ak5Far All the best, /Bjørn STRUCTURAL AND FUNCTIONAL STUDIES of eukaryotic membrane proteins involved in metabolite transport A PhD position is available in

[ccp4bb] Postdoc position (Denmark), Structural biology with a focus on metabolite uptake

Dear colleagues, Please pass this open postodoc position along to anyone who might be interested. Thanks! Deadline is Aug. 15th. /Bjørn Link: https://www.au.dk/om/stillinger/job/re-advertisement-postdoctoral-position-in-structures-of-metabolite-transporting-membrane-proteins-a/

[ccp4bb] Postdoc position, Plant Hormone Transporting Membrane Proteins (Denmark)

Dear colleagues, I have an open postdoc position funded by the ERC (details below). Please pass this along to anyone who might be interested. Thanks! /Bjørn Postdoctoral position in Structure of Plant Hormone Transporting Membrane Proteins at Aarhus University, Denmark. online posting:

[ccp4bb] Postdoc position, Plant Hormone Transporting Membrane Proteins (Denmark)

Dear colleagues, We have an open postdoc position. 3 days left before deadline. Come joint us. Great working environment, World-class science. Good work/life balance. /Bjørn --- Postdoctoral position in Structure of Plant Hormone Transporting Membrane Proteins

[ccp4bb] Two positions (postdoc and PhD) in Structures of Metabolite Transporting Membrane Proteins at Aarhus University, Denmark.

Dear all, Just a reminder that we have two open positions (1 postdoc and 1 PhD) available to join our team and investigate metabolite transport using structural biology. Please pass along to anyone who might be interested. Thanks! PhD position = https://bit.ly/3Ak5Far Postdoc position =

[ccp4bb] Postdoctoral position in structure of sugar and phytohormone transporting membrane proteins at Aarhus University, Denmark.

Dear colleagues, Please pass this along anyone who might be interested. Thanks! /Bjørn Postdoctoral position in structure of sugar and phytohormone transporting membrane proteins at Aarhus University, Denmark. online posting: