OK, thanks.
I guess it is time to upgrade to CCP4 v8.
Ed
From: Paul Emsley
Sent: Tuesday, August 8, 2023 1:14 PM
To: Edward A. Berry ; COOT@JISCMAIL.AC.UK
Subject: [EXTERNAL] Re: Problem installing coot binary
On 08/08/2023 06:49, Edward A. Berry wrote:
I
I would appreciate instruction for getting a downloaded coot binary to run.
I got coot-0.9.7-binary-Linux-x86_64-centos-7-python-gtk2.tar.gz
There is no README file in the top directory.
I edited bin/coot to set
#PYTHON=/tb2/sw/lnx/coot-Linux-x86_64-centos-7-gtk2-python/include/python2.7
What is the format for match-list in:
lsq-match imol-ref imol-moving match-list
(or where is it described).
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Dropdown menu "Calculate", "other modeling tools, choose "undo" molecule.
On 02/04/2019 12:16 PM, Ahmad Khalifa wrote:
I have three structures open in Coot. I have only one displayed that I was
working on. Oddly enough, when I press undo, I get a warning about how Coot
can't undo
On 01/08/2019 11:27 PM, Yong Tang wrote:
Happy New Year to all,
I'm solving many structures of the same protein and would like to find a quick
way to inspect like 10 selected residues of the 250aa protein in coot, for
every structure against the matched electron density maps.
What is the
On 07/16/2018 05:15 PM, Xiao Lei wrote:
Hi All,
Is there a way to measure the distance between an atom and another atom in
symmetry mate models? I tried to measure the distance usually by clicking two
atoms, coot only gave very long distance between the two atoms in ASU, even
though the
, Tsinghua University
Room 255, New Biology Building, Beijing, China, 100084
*From:* Edward A. Berry <mailto:ber...@upstate.edu>
*Date:* 2018-06-11 22:16
*To:* COOT <mailto:COOT@JISCMAIL.AC.UK>
*Subject:* Re: rotation and translation when building model in cryo-em map
(P6(1) or P6(5), not P6!)
On 06/11/2018 10:16 AM, Edward A. Berry wrote:
Hi Yao-Wang,
If I understand the problem correctly, then if you have built two adjacent
molecules, you can superimpose molecule 1 on molecule 2 to get the operator.
Then apply this operator to molecule 2 to make 3
Hi Yao-Wang,
If I understand the problem correctly, then if you have built two adjacent
molecules, you can superimpose molecule 1 on molecule 2 to get the operator.
Then apply this operator to molecule 2 to make 3, to moolecule 3 to make 4, and
so on around the helix for as far as you want to
FFT
program as I originally stated.
Thanks for the correction!
Cheers
-- Ian
On 19 April 2018 at 17:44, Edward A. Berry <ber...@upstate.edu
<mailto:ber...@upstate.edu>> wrote:
On 04/19/2018 08:57 AM, Ian Tickle wrote:
Hi, first maps are produced by Refmac, not Coot, and
On 04/19/2018 08:57 AM, Ian Tickle wrote:
Hi, first maps are produced by Refmac, not Coot, and second it shouldn't be
called sigma because it's not an uncertainty, it's a root-mean-square deviation
from the mean. The equation for the RMSD can be found in any basic text on
statistics, e.g.
Is there a way to open the "geometry" window (the box you open by
"measures":"distances and angles") in the initialization script, and perhaps set its
position on screen as well?
Is there a way (interactively now) to center the screen at specified x,y,z
coordinates (as opposed to centering on
for COOT
On 16/11/2017 13:28, Edward A. Berry wrote:
(set-go-to-atom-molecule 0)
(set-go-to-atom-chain-residue-atom-name "B" 42 " CA ")
Would those be also on the command line, or where?
You can use them on the command line like this:
coot --pdb input.pdb -c '(set-go-to-atom-
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