Am 22.11.10 10:49, schrieb Eleanor Dodson:
On 11/18/2010 05:45 PM, Phil Evans wrote:
On 16 Nov 2010, at 13:22, Paul Emsley wrote:
Dear Phil,
Sorry for the delay, I am only just back from somewhat extensive
travels.
On 01/11/10 12:26, Phil Evans wrote:
If I "colour by chain" (my preferred
On 11/18/2010 05:45 PM, Phil Evans wrote:
On 16 Nov 2010, at 13:22, Paul Emsley wrote:
Dear Phil,
Sorry for the delay, I am only just back from somewhat extensive travels.
On 01/11/10 12:26, Phil Evans wrote:
If I "colour by chain" (my preferred option), metal ions disappear
Thanks for the
Crystallographic Software
[mailto:c...@jiscmail.ac.uk] On Behalf Of Phil Evans
Sent: Thursday, November 18, 2010 12:45 PM
To: COOT@JISCMAIL.AC.UK
Subject: Re: [COOT] Colour by chain
On 16 Nov 2010, at 13:22, Paul Emsley wrote:
> Dear Phil,
>
> Sorry for the delay, I am only just back from somewhat ext
On Tue, 2010-11-16 at 13:22 +, Paul Emsley wrote:
> > also is there any way of refining a zone around a metal ion without
> the sidechains vanishing into the metal density? I know the
> refine-by-sphere ("R") option works better, but then I have no control
> over what I'm refining
> >
>
Had t
Oops, sorry forgot that I had the one for the latest version where I did
some changes. Of course for 'older' version (pre- version 3238 or
thereabouts) Phil's command is the one to use. In general replace
sphere_refine()
with
sphere_refine(your_favourite_radius)
Done.
B
That doesn't work
That doesn't work in my OSX coot (maybe an oldish version 3072), no button
appears
The simpler command doe:s
coot_toolbar_button("Sphere Refine", "sphere_refine(5.0)", "reset-view.svg")
Phil
On 19 Nov 2010, at 08:26, Bernhard Lohkamp wrote:
>
also is there any way of refining a zone ar
also is there any way of refining a zone around a metal ion without the sidechains
vanishing into the metal density? I know the refine-by-sphere ("R") option
works better, but then I have no control over what I'm refining
Sphere refine is simply a thin layer around the refine-residues functio
On 16 Nov 2010, at 13:22, Paul Emsley wrote:
> Dear Phil,
>
> Sorry for the delay, I am only just back from somewhat extensive travels.
>
> On 01/11/10 12:26, Phil Evans wrote:
>> If I "colour by chain" (my preferred option), metal ions disappear
>
> Thanks for the notification of this bug. It
Dear Phil,
Sorry for the delay, I am only just back from somewhat extensive travels.
On 01/11/10 12:26, Phil Evans wrote:
If I "colour by chain" (my preferred option), metal ions disappear
Thanks for the notification of this bug. It is fixed now, rev 3245.
also is there any way of refining
Phil,
If I "colour by chain" (my preferred option), metal ions disappear
I see, but not all metals disappear (only your favourite ones I guess,
e.g. PT is there). Not sure if feature or bug (I guess the latter).
also is there any way of refining a zone around a metal ion without the sidech
If I "colour by chain" (my preferred option), metal ions disappear
also is there any way of refining a zone around a metal ion without the
sidechains vanishing into the metal density? I know the refine-by-sphere ("R")
option works better, but then I have no control over what I'm refining
Phil
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