those
files/scripts that generate the error messages, and let lenny do upgrading
correctly? Someone has kindly suggested to carry out again a dist-upgrade,
though I suspect that with my system the final outcome would be the same.
Thanks
francesco pietra
--- On Tue, 5/6/08, Lennart Sorensen
]
Subject: Re: libsc7_2.3.1-3_amd64.deb problems
To: Francesco Pietra [EMAIL PROTECTED]
Cc: C. Ahlstrom [EMAIL PROTECTED], debian64
debian-amd64@lists.debian.org
Date: Tuesday, May 6, 2008, 9:32 AM
On Tue, May 06, 2008 at 08:53:27AM -0700, Francesco Pietra
wrote:
Hi:
Sorry
, Lennart Sorensen [EMAIL PROTECTED] wrote:
From: Lennart Sorensen [EMAIL PROTECTED]
Subject: Re: libsc7_2.3.1-3_amd64.deb problems
To: Francesco Pietra [EMAIL PROTECTED]
Cc: C. Ahlstrom [EMAIL PROTECTED], debian64
debian-amd64@lists.debian.org, debian-users [EMAIL PROTECTED]
Date: Tuesday, May 6
RANLIB= ranlib
Thanks
francesco pietra
Be a better friend, newshound, and
know-it-all with Yahoo! Mobile. Try it now.
http://mobile.yahoo.com/;_ylt=Ahu06i62sR8HDtDypao8Wcj9tAcJ
:58 AM
Francesco Pietra wrote:
snip
With my system
gcc -v
reports:
gcc 4.2.3 (Debian 4.2.3-3)
g77 -v
reports:
reading from /usr/lib/gcc/x86_64-linux-gnu/3.4.6/specs
Configured with: ../src/configure -v
--enable-languages=c,c++,f77,pascal --prefix=/usr
--libexecdir=/usr/lib
) 64 l_cc_p_10.1.015_intel64.tar.gz 39 MB
Product for IA-64 l_cc_p_10.1.015_ia64.tar.gz 70 MB
Thanks
francesco pietra
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PROTECTED] writes:
Hello,
on my amd64 Etch, I installed the intel64 ball: it
rocks.
Note that, amazingly, some ia32 packages are needed
:-)
Jerome
Lennart Sorensen wrote:
On Wed, May 14, 2008 at 02:51:47PM -0700,
Francesco Pietra wrote:
On amd64 lenny I would like
to be correctly installed)
Thanks
francesco pietra
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In fact, oddly,
$ apt-file search libnuma (or libnuma1)
reports nothing, while 'locate' locates the package.
--- On Sun, 5/18/08, Francesco Pietra [EMAIL PROTECTED] wrote:
From: Francesco Pietra [EMAIL PROTECTED]
Subject: apt-file update
To: debian64 debian-amd64@lists.debian.org
Date
Just to let you know that while issues about exim-4, bds-mailx, etc have been
fixed on both amd64 and i386 (lenny), on amd 64 acpid still remains not
configured. On i386 no issue. At least on my system.
francesco pietra
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With amd64 lenny, after having compiled an application, each time I login as
user (no X system activated) a long list statements of the type
declare -x MPI_HOME=usr/local
shows up before the
[EMAIL PROTECTED]:~$
prompt.
How to clean from this annoying situation?
Thanks
francesco pietra
It seems to me that the command
$ apt-file search somelib.so
on Debian Linux amd64 lenny (after # updatedb) does not work. Annoying
when a compilation says that a library libmkl_intel.so) is not
present, while it is present in /opt/intel/mkl/10.0.1.014/lib/32
francesco pietra
time was taken by deleting
messages from ubuntykubunty, macs, and windows, which have little, or
nothing, to do with debian. I forgot to drop this message before
exiting the list. Hope it receives attention from here.
Thanks
francesco pietra
--
Dr Francesco Pietra
Professor of Chemistry
Accademia
the waring message
arrived through leds, the first temp was 65; I had set 67 as limit)
In contrast, w83627hf-isa-0290 does not respond at all. I do not see
any other indication on sensors for the suggested W83627-HF-AW chip.
Is it any hope to put to some use these indications?
Thanks
francesco
to kill that reading?
Thanks
francesco pietra
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or not this issue is related to the one below, both happenen
without warning on my amd6a.
Thanks
francesco pietra
-- Forwarded message --
From: Francesco Pietra [EMAIL PROTECTED]
Date: Fri, Aug 8, 2008 at 6:48 PM
Subject: Events at login
To: amd64 Debian debian-amd64@lists.debian.org
Hope
not .so.1.
As far as I could investigate, libgfortran.so.1 is not available for
amd64 lenny (it is for i386 lenny, as available on my desktop).
A solution?
Thanks a lot
francesco pietra
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is available for i386
lenny and not amd64 lenny? Is any backports for the latter?
Thanks
francesco
On Thu, Aug 28, 2008 at 9:45 PM, Anders Lövgren [EMAIL PROTECTED] wrote:
On Thursday 28 August 2008 20.44.39 Francesco Pietra wrote:
Hi:
While working with a gnu docking package, I am finding
etch safe?
Thanks
francesco pietra
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I am trying to compile with gcc on amd64 lenny a program that requests
gdbm.h Debian lists several libgdbm.o files, though libgdbm.h is
present nowhere.
Which is the equivalent?
Thanks
francesco pietra
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computations, all applications installed in
/usr/local).
What could I do to set up the sytem in order before resuming the computation?
Thanks
francesco pietra
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On Wed, Oct 29, 2008 at 7:06 AM, Douglas A. Tutty [EMAIL PROTECTED] wrote:
On Wed, Oct 29, 2008 at 05:44:31AM +0100, Francesco Pietra wrote:
Major mistake (shutting down the ups unit) while doing a parallel
computation on all 8 processors (UMA-type machine amd64 lenny with
raid 1 two disks
emul
etc
home
initrd
initrd.img
initrd.img.old
lib
lib32
lib64
lost+found
media
mnt
opt
proc
root
sbin
opt
proc
root
sbin
selinux
srv
sys
tmp
usr
var
vmlinuz
vmlinuz.old
==
/dev/md4 2.8G 1.6G 1.1G 59% /var
On Wed, Oct 29, 2008 at 8:24 AM, Francesco Pietra [EMAIL PROTECTED
On Wed, Oct 29, 2008 at 11:40 AM, Alex Samad [EMAIL PROTECTED] wrote:
On Wed, Oct 29, 2008 at 08:24:55AM +0100, Francesco Pietra wrote:
On Wed, Oct 29, 2008 at 7:06 AM, Douglas A. Tutty [EMAIL PROTECTED] wrote:
On Wed, Oct 29, 2008 at 05:44:31AM +0100, Francesco Pietra wrote:
[snip]
cat
October 2008 06:16, Francesco Pietra wrote:
On Wed, Oct 29, 2008 at 11:40 AM, Alex Samad [EMAIL PROTECTED] wrote:
On Wed, Oct 29, 2008 at 08:24:55AM +0100, Francesco Pietra wrote:
On Wed, Oct 29, 2008 at 7:06 AM, Douglas A. Tutty [EMAIL PROTECTED]
wrote:
On Wed, Oct 29, 2008 at 05:44:31AM
direction as to what
should be checked.
Thanks
francesco
I
On Thu, Oct 30, 2008 at 6:58 PM, C M Reinehr [EMAIL PROTECTED] wrote:
Francesco,
On Thu 30 October 2008 04:14, Francesco Pietra wrote:
Then, let me ask about a raid1 devised mainly for the system than the
data (once a calculation
, 2008 at 9:37 AM, Francesco Pietra [EMAIL PROTECTED] wrote:
Hi all:
The story continues, unfortunately.
After the last kind mail below, I could carry out several long
parallel computations on all 4 physical (8 logical) dual-opteron 875
processors , or a fraction of them(amd6a lenny; H8QCE
.
francesco pietra
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-- Forwarded message --
From: Francesco Pietra francesco.pie...@accademialucchese.it
Date: Sun, Dec 28, 2008 at 10:32 AM
Subject: Failure to load amd64 lenny
To: amd64 Debian debian-amd64@lists.debian.org
Hi:
My parallel computer (Supermicro main board H8QC8, 4 dual opteron 875
Please, disregard this thread. I have posted the problem under a different view.
francesco pietra
-- Forwarded message --
From: Francesco Pietra chiendar...@gmail.com
Date: Tue, Dec 30, 2008 at 8:18 AM
Subject: Re: Fwd: Failure to load amd64 lenny
To: Justin Piszcz jpis
Posted again from the e-mail address I am registered to
-- Forwarded message --
From: Francesco Pietra francesco.pie...@accademialucchese.it
Date: Fri, Jan 2, 2009 at 8:26 PM
Subject: Failure to load amd64 overcome, though mem problems
To: amd64 Debian debian-amd64
the
authorized_keys files, in order that each machine knows itself. But
there must be a simpler way.
Why that need? Certain parallelized computational codes only work if
the above 'fully' is met. I came once again across the issue in
reinstalling i386 following a died HD.
Thanks
francesco pietra
Hi:
Perhaps it is because it is amd64 I had no suggestion on debian user.
Hope here if what I submitted is clear enough
thanks
francesco pietra
-- Forwarded message --
From: Francesco Pietra chiendar...@gmail.com
Date: Sun, Jan 25, 2009 at 4:53 PM
Subject: XIO: fatal error 104
]
===
I.e., I am still uncertain if sda has to be replaced with a new disk,
or the errors reported were temporary and have been removed by raid1.
thanks
francesco
-- Forwarded message --
From: Francesco Pietra chiendar...@gmail.com
Date: Tue, Mar 3, 2009 at 11:21 AM
Subject
.
sdb reported no errors
thanks
francesco pietra
On Tue, Mar 3, 2009 at 5:02 PM, Francesco Pietra chiendar...@gmail.com wrote:
How to run selftest with raid1?
smartctl -t /dev/sda (or sda1
On Tue, Mar 3, 2009 at 9:52 PM, Alex Samad a...@samad.com.au wrote:
On Tue, Mar 03, 2009 at 12:26:27PM +0100, Goswin von Brederlow wrote:
Francesco Pietra chiendar...@gmail.com writes:
[snip]
That is a lot of raids. Have you ever thought about using LVM? The
different raid1 will mess up
Hi:
I am looking for a debian thread instructing how to make bootable both
disks in a mdadm raid1. I followed successfully the recipe time ago,
don't remember how, and unfortunately did not take any notice. Unable
now to find the thread on the web. Perhaps someone may remember.
Thanks
francesco
On Mon, Mar 9, 2009 at 7:46 PM, C M Reinehr c...@amsent.com wrote:
On Sat 07 March 2009 12:05:16 pm Francesco Pietra wrote:
Hi:
I am looking for a debian thread instructing how to make bootable both
disks in a mdadm raid1. I followed successfully the recipe time ago,
don't remember how
, Mar 03, 2009 at 12:26:27PM +0100, Goswin von Brederlow wrote:
Francesco Pietra chiendar...@gmail.com writes:
[snip]
That is a lot of raids. Have you ever thought about using LVM? The
different raid1 will mess up each others assumption about the head
positioning of the component devices
, once a new
computational code I am dealing with warns about the importance of
setting correctly the memory per CPU (shmmax).
thanks
francesco pietra
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to resume, F2 to stop.
On pressing F1 it boots fine and everything is working, as far as I
can understand. On booting again, same issues.
BIOS (never updated) problem with lenny?
Thanks for advice
francesco pietra
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version: a3
width: 32 bits
clock: 66MHz (15.2ns)
capabilities: bus_master
configuration: latency=0
=
thaks for help
francesco
-- Forwarded message --
From: Francesco Pietra chiendar...@gmail.com
Date: Wed, Mar 18, 2009 at 8:18 AM
I forgot to mention that the graphic card is Pixelview 6600 256M DDR
DVI GeForce 6800. I expected that it is compatible with fglrx
francesco
-- Forwarded message --
From: Francesco Pietra chiendar...@gmail.com
Date: Thu, Mar 19, 2009 at 4:05 PM
Subject: Fwd: Resource conflict
/X11/xorg.conf is the same as before, when X failed to
start.
thanks
francesco
-- Forwarded message --
From: Francesco Pietra chiendar...@gmail.com
Date: Sun, Mar 22, 2009 at 7:54 PM
Subject: Re: Fwd: Resource conflict amd64 lenny MMIO issues
failure of modprobe fglrx
To: Lennart
and xorg-dev is installed.
thanks
francesco pietra
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to have
to use ifort as amber runs faster with it (I could have set gcc above
because amber uses the Fortran compiler only)
francesco pietra
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to find
the right flags with gnu Fortran for the very difficult part of the
code)
thanks
francesco pietra
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but intel
does not see it.
Thanks a lot
francesco pietra
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on the remote machine when sshing env | sort).
Other linux users are quite surprised that this does not work (in my
hands) with amd64 lenny.
thanks
francesco pietra
I have the following problem with the debian openssh package (ver.
1:4.6p1-5):
when I do a non interactive ssh connection, the .bashrc
a lot for indicating how to get things running.
francesco
Thanks
francesco
On Thu, Apr 16, 2009 at 9:15 PM, Jochen Schulz m...@well-adjusted.de wrote:
Francesco Pietra:
when I do a non interactive ssh connection, the .bashrc
and .bash_profile files in the home directory are not executed during
to the version of gcc.
thanks for suggestions
francesco pietra
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.
I have looked at /var/log/syslog not finding a clear trace of the
failure. The machine was not used today and all of today in syslog
relates to 28 April 19.56-19.57.
thanks for suggestions if the message is relevant.
francesco pietra
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understand) available from debian-multimedia,
is it a different SAFE route to get that working? I have also lib32
and - I guess - don't need 64 bit for that.
Thanks a lot for advice on this (for me) very unusual need.
francesco pietra
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with four
sockets on a single mainboard?
thanks
francesco
On Fri, May 1, 2009 at 3:59 PM, Douglas A. Tutty dtu...@vianet.ca wrote:
On Tue, Apr 28, 2009 at 08:12:14PM +0200, Francesco Pietra wrote:
I wonder whether a failure to boot (amd64 lenny, multiprocessor,
raid1) requires attention
way it
safe to download plugins related to graphics and if such plugins are
installable by users (my wife has access to the computer with her
username and i should avoid to harm the driver installation).
thanks
francesco pietra
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and the above stuff was for lenny and i had to
renounce to autodock. Now, I I have again to renounce to autodock.
regards
francesco pietra
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From: Francesco Pietra chiendar...@gmail.com
Date: Wed, May 13, 2009 at 1:47 AM
Subject: about autodocktools package
To: debian-science debian-scie...@lists.debian.org, amd64 Debian
debian-amd64@lists.debian.org
Hi:
Package autodocktools for amd6a is only available for sid. As an aid
- and different - setting.
Thanks
francesco pietra
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VRML plugin that installs correctly on amd64.
thanks
francesco pietra
france...@tya64:~$ echo $LD_LIBRARY_PATH
/opt/intel/mkl/10.0.1.014/lib/em64t:/opt/intel/cce/10.1.015/lib:/opt/intel/fce/10.1.015/lib:/usr/local/lib:/opt/acml4.2.0/gfortran64_mp_int64/lib
france...@tya64:~$ export LD_LIBRARY_PATH
; the command cat
filename takes hours to print the end of the file. At least so when
all memory (24GB) is taken by the diagonalization of matrix, while the
hamiltonian is stored out of memory (10GB).
thanks
francesco pietra
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Hi:
Any turnaround to get SANE drivers working for Nikon Coolscan LS-50 ED
on amd64 lenny? I can't upgrade to sid because of computational
programs not adapted to sid.
thanks
francesco pietra
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required for GPGPU computing?
thanks
francesco pietra
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is not working.
@
Adding the line
option ForcePCIMode True
to /etc/X11/xorg.conf (section Device)
did not help, and was therefore removed.
Thanks for help
francesco pietra
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no acceleration.
francesco
On Sun, Feb 28, 2010 at 1:57 AM, Hamish Moffatt ham...@debian.org wrote:
On Fri, Feb 26, 2010 at 10:57:40AM +0100, Francesco Pietra wrote:
Following a reinstall of amd64 lenny I am unable to get 3D
acceleration (which was working fine before), although every check
of chemistry squeeze is as if it were nonexistent.
Thanks
francesco pietra
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Archive:
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of chemistry squeeze is as if it were nonexistent.
Thanks
francesco pietra
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such problems. Is there one?
Thanks
francesco pietra
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. I would be
responsible for damage to the software.
Otherwise, do you know a distribution of linux that overcomes such
problems by making some key recent packages available for their stable
version? I could suggest to move to that because of recurring problems
for us.
Thanks
francesco pietra
that it refers to
81:00.0 VGA compatible controller: nVidia Corporation NV43 [GeForce
6600] (rev a2)
which, as far as I understand, is fully functioning.
thanks
francesco pietra
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libXext
libXext.so.6 - libXext.so.6.4.0
libXext.so.6 - libXext.so.6.4.0
tya64:/home/francesco#
I am confused how to turnaround the problem. Thanks for help. francesco pietra
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.
Greetings from an affectinated Debian user
francesco pietra
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Following a market search, i have to reformulate my question by
replacing GTX-470 with GTX-570. The former seems to have nearly
disappeared, or i costs nearly as much as the latter.
francesco pietra
-- Forwarded message --
From: Francesco Pietra chiendar...@gmail.com
Date: Sat
. The situation is not likely to change rapidly
due to enormous task of parallelizing with the myriad of loci on GPUs.
Perhaps, developers are waiting until GPU-CPU integrated boards are
available.
francesco pietra
-- Forwarded message --
From: Francesco Pietra chiendar...@gmail.com
Date
+devices 0,2 configfile
Thanks for advice
francesco pietra
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On Tue, May 31, 2011 at 5:56 PM, Lennart Sorensen
lsore...@csclub.uwaterloo.ca wrote:
On Tue, May 31, 2011 at 05:20:35PM +0200, Francesco Pietra wrote:
I have just set up a gaming machine with
Gigabyte GA 890FXUD5
AMD Phenom II 10775T
2 x GTX470 GPU cards
4 x 4GB RAM
2 x 1 Tb HD for RAID1
On Tue, May 31, 2011 at 5:56 PM, Lennart Sorensen
lsore...@csclub.uwaterloo.ca wrote:
On Tue, May 31, 2011 at 05:20:35PM +0200, Francesco Pietra wrote:
I have just set up a gaming machine with
Gigabyte GA 890FXUD5
AMD Phenom II 10775T
2 x GTX470 GPU cards
4 x 4GB RAM
2 x 1 Tb HD
On Fri, Jun 3, 2011 at 7:55 PM, Lennart Sorensen
lsore...@csclub.uwaterloo.ca wrote:
On Fri, Jun 03, 2011 at 05:34:57PM +0200, Francesco Pietra wrote:
On Fri, Jun 3, 2011 at 4:43 PM, Lennart Sorensen
lsore...@csclub.uwaterloo.ca wrote:
On Fri, Jun 03, 2011 at 08:44:07AM +0200, Francesco
-a)
NVIDIA: could not open the device file /dev/nvidia1 (no such file)
Failed to initialize NVML: unknown error.
unsure if these commands are for Tesla only.
Thanks for advice
francesco pietra
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regularly using both gtx 470. The
machine had not been touched either.
francesco
-- Forwarded message --
From: Francesco Pietra chiendar...@gmail.com
Date: Tue, Jun 14, 2011 at 6:38 PM
Subject: Re: cuda error cudastreamcreate,
To: Lennart Sorensen lsore...@csclub.uwaterloo.ca
yesterday to allude to a change of driver
source. Which was unfair.
Thanks a lot
francesco
On Wed, Jun 15, 2011 at 2:22 AM, Fabricio Cannini
fabri...@versatushpc.com.br wrote:
Em terça-feira 14 junho 2011, às 16:01:57, Lennart Sorensen escreveu:
On Tue, Jun 14, 2011 at 07:23:38PM +0200, Francesco Pietra
2 binding to CUDA device 0 on gig64: 'Device
Emulation (CPU)' Mem: 0MB Rev: .
FATAL ERROR: CUDA error cudaStreamCreate on Pe 2 (gig64 device 0): no
CUDA-capable device is available
-- Forwarded message --
From: Francesco Pietra chiendar...@gmail.com
Date: Wed, Jun 15
Running nvidia-smi -L as root restores the visibility of the graphic
cards. At any boot such visibility vanishes. So, it is a small
problem, or no problem. francesco
-- Forwarded message --
From: Francesco Pietra chiendar...@gmail.com
Date: Wed, Jun 15, 2011 at 4:37 PM
Subject
I forgot the list.
f.
-- Forwarded message --
From: Francesco Pietra chiendar...@gmail.com
Date: Thu, Jun 16, 2011 at 4:11 PM
Subject: Re: Fwd: cuda error cudastreamcreate,
To: Brian Morris cymraeg...@gmail.com
Oh, no, absolutely no. Where are scientific apencl applications
with amd64 lenny or squeeze.
francesco pietra
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save or vuescan).
francesco pietra
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these
GUIs.
francesco
-- Forwarded message --
From: Francesco Pietra chiendar...@gmail.com
Date: Mon, Jun 27, 2011 at 4:53 PM
Subject: failure of scanner with gnome2
To: amd64 Debian debian-amd64@lists.debian.org
Dist-upgrading to wheezy (gnome2.30.2) prevents me using a scsi HP
6200C
correctly what happens.
It is a simple warning to see if other amd64 users had problems with
the new nvidia driver.
thanks
francesco pietra
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Archive
. The reason
of the copy is that the molecular-mechanics code can't be compiled
with recent gcc/fortran (its loose fortran is not allowed by recent
compilers) while the wheezy cuda machine is far faster than the old
cpu machine.
thanks
francesco pietra
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know if this
is the correct way of doing and why with wheezy this change.
thanks
francesco pietra
-- Forwarded message --
From: Francesco Pietra chiendar...@gmail.com
Date: Fri, Jul 1, 2011 at 7:48 PM
Subject: /bin/sh linked to dash?
To: amd64 Debian debian-amd64
without any problem and finish without any warning.
thanks
francesco pietra
On Sat, Jul 2, 2011 at 10:21 PM, Lennart Sorensen
lsore...@csclub.uwaterloo.ca wrote:
On Fri, Jul 01, 2011 at 10:39:05PM +0200, Francesco Pietra wrote:
Solved by
# mv /bin/sh /bin/sh_original
# ln -s /bin/bash /bin/sh
AMBER has now promised to point sh to dash in next versions of their packages.
francesco
-- Forwarded message --
From: Francesco Pietra chiendar...@gmail.com
Date: Sat, Jul 2, 2011 at 11:34 PM
Subject: Re: Fwd: /bin/sh linked to dash? SOlVED, however..
To: Lennart Sorensen lsore
of emacs.
Thanks for advice
francesco pietra
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),
however i don't mind as far as i can work. chiendarret
On Wed, Jul 6, 2011 at 5:49 PM, Francesco Pietra chiendar...@gmail.com wrote:
Although I am trying to run an application, the messages below may
indicate general problems with the computer. While I could run
namd-cuda md simulations without
, Francesco Pietra chiendar...@gmail.com wrote:
Replying as the author:
Solved by setting persistent mode for both gtx470 and monitoring from
a ssh-linked desktop. The gtx470 machine appears from its terminal (no
X system was raised) as if it were hanged (keyboard not sensed,
terminal blinking
-- Forwarded message --
From: Francesco Pietra chiendar...@gmail.com
Date: Thu, Jun 30, 2011 at 10:21 AM
Subject: about latest nvidia cuda driver 275.09.07
To: amd64 Debian debian-amd64@lists.debian.org
Following kind guidance by Lennart Sorensen as to the correct
installation
. License is given for a small fee,
just to keep things going on.
francesco pietra
On Sat, Jul 9, 2011 at 3:55 AM, brian m. carlson
sand...@crustytoothpaste.net wrote:
On Fri, Jul 08, 2011 at 05:39:01PM -0400, Robert Isaac wrote:
On Thu, Jul 7, 2011 at 10:55 PM, Lennart Sorensen
lsore
With amd64 wheezy, commands
startx
exec ck-launch-session gnome-session
report today, after update/upgrade
gdu notification daemon 4807: libgdu Unhandled propertyDeviceAutoMount
francesco pietra
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), possibly a driver problem.
My question is (please, see below) how to try to resolve the puzzle,
by either taking the latest driver from unstable or back to the
older 270.41.19-1 driver. I have no experience in doing either move
safely.
Thanks for advice
francesco pietra
Originally Posted
in these days, but all prospects are
that CUDA problems are solved for MD too by the new driver.
francesco pietra
-- Forwarded message --
From: Francesco Pietra chiendar...@gmail.com
Date: Wed, Jul 13, 2011 at 3:57 PM
Subject: Fwd: about latest nvidia cuda driver 275.09.07
problems with the nvidia driver for cuda applications and the
related bash-dash. So that I do no upgrading until the grub procedure
is clear to me.
thanks
francesco pietra
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