Bug#943931: [Python-modules-team] Bug#943931: cloudpickle: autopkgtests still run python 2 tests

2019-11-01 Thread Diane Trout
t the same of salsa. > https://salsa.debian.org/python-team/modules/cloudpickle > > > Cheers, > Arias Emmanuel > @eamanu > http://eamanu.com > > El vie., 1 de nov. de 2019 a la(s) 00:30, Diane Trout (di...@ghic.org > ) escribió: > > Thanks for noticing

Bug#943931: cloudpickle: autopkgtests still run python 2 tests

2019-10-31 Thread Diane Trout
Thanks for noticing and telling me. Just uploaded a fixed package. Diane On Fri, 2019-11-01 at 12:54 +1300, Michael Hudson-Doyle wrote: > Source: cloudpickle > Version: 1.2.1-1 > Severity: normal > Tags: patch > > Dear Maintainer, > > As subject. Best not to test packages that are no longer >

Bug#924522: please package tests

2019-08-30 Thread Diane Trout
Hi, I was wondering how you would call the tests in an autopkgtests? Diane signature.asc Description: This is a digitally signed message part

Bug#936076: python3-numba: numba segfaults when run with python 3.7.4 at numba/_dynfunc.c:52

2019-08-29 Thread Diane Trout
Package: python3-numba Version: 0.42.0-1 Severity: grave Tags: upstream Justification: renders package unusable Dear Maintainer, Attempting to run any numba code immediately segfaults when running with python 3.7.4. I found this upstream bug report. https://github.com/numba/numba/pull/4328 "CPy

Bug#935995: python3-notebook: in browser terminal using term.js doesn't work.

2019-08-28 Thread Diane Trout
Package: python3-notebook Version: 5.7.8-1 Severity: normal Tags: patch Dear Maintainer, I tried hitting "new -> terminal" from the notebook file browser. A gray screen with no terminal appeared. I hacked a fix in for me, but my knowledge of javascript is limited and I think term.js isn't design

Bug#932413: python3-rpy2 should depend on tzlocal

2019-07-18 Thread Diane Trout
Package: python3-rpy2 Version: 3.0.5-1 Severity: normal Dear Maintainer, python3-rpy2 should probably include a dependency on tzlocal or import tzlocal should not be top level import. /usr/lib/python3/dist-packages/rpy2/robjects/pandas2ri.py directly imports tzlocal It looks like the following

Bug#892860: python-paramiko: please accommodate pre-GSSException python-gssapi

2019-07-10 Thread Diane Trout
Hi, I poked upstream to pick a fix. https://github.com/paramiko/paramiko/issues/1256#issuecomment-510133747 They said this patch: https://github.com/paramiko/paramiko/pull/1311 was merged in 2.6.0 Should we just update to a newer paramiko?

Bug#924787: Motivation for blocking 842194

2019-06-10 Thread Diane Trout
Hi, I discovered the need for the new udev rules via trying to use the yubikey-personalization-gui. Someone had reported 842194 and as far as I can tell its caused by the same permission denied problem this bug is covering. I suppose one could argue the gui should have reported the permission den

Bug#842194: [yubikey-personalization-gui] 'Unknown error occurred' reported - insufficient permissions

2019-06-07 Thread Diane Trout
I'd like to get upstream's opinion but I was able to get the personalization-gui to work by adding thefollowing udev rule to /etc/udev/rules.d/70-yubikey-ccid.rules This version grants access to the logged in user but uses some systemd features to do it, on a system without systemd you can probab

Bug#927316: python3-googlecloudapis: The python3-googlecloudapis package says it provides the Python 2.x version

2019-04-17 Thread Diane Trout
Package: python3-googlecloudapis Version: 0.9.30+debian1-2 Severity: minor Dear Maintainer, While looking for other something I noticed the python3-googlecloudapis package says for its short description: collection of utilities for client-side tools - Python 2.x And its long description ends w

Bug#919256: dnssec-trigger: Failed to upgrade: installed dnssec-trigger package post-installation script subprocess returned error exit status 1

2019-02-06 Thread Diane Trout
version: 0.17+repack-3 tag: pending I have a new version (hopefully uploaded successfully) where I fixed dnssec-trigger-control-setup to not generate new keys or certificates if called repeatedly. So now the code to delete small keys should get called. I also included upstream's fix for the segfa

Bug#921463: python3-dask: recursion problem

2019-02-05 Thread Diane Trout
Could send me a small test program that triggers the bug? I'll try looking at it and sending it upstream. Thanks, Diane On Tue, 2019-02-05 at 20:33 +0100, javierruano wrote: > Package: python3-dask > Version: 1.0.0+dfsg-2 > Severity: normal > Tags: lfs > > Dear Maintainer, > > *** Reporter,

Bug#918930: owncloud-client: owncloud client complains about being used with nextcloud server

2019-01-30 Thread Diane Trout
On Tue, 2019-01-29 at 06:24 +0100, Louis-Philippe Véronneau wrote: > Control: severity -1 normal > > Since nextcloud-desktop [1] is now packaged in Debian, I feel this > resolves this bug. People using a Nextcloud server should migrate to > this package instead. > > I won't close the bug myself a

Bug#919256: dnssec-trigger: Failed to upgrade: installed dnssec-trigger package post-installation script subprocess returned error exit status 1

2019-01-16 Thread Diane Trout
On Wed, 2019-01-16 at 08:55 +0100, Axel Beckert wrote: > > > # summary of how this script can be called: > #* `configure' > [...] > case "$1" in > configure) > # configure the control channel if run for the first time > if [ -z "$2" ]; then > dnssec-trigg

Bug#919256: dnssec-trigger: Failed to upgrade: installed dnssec-trigger package post-installation script subprocess returned error exit status 1

2019-01-15 Thread Diane Trout
Ok I found the place that was causing the segfault on installation, made a patch, it worked for me, and I pushed a new release. (Fixes also sent upstream) dnssec-trigger should also now only look for configuration files in /etc/dnssec-trigger, and it shouldn't try to create ones in /etc any more

Bug#919256: dnssec-trigger: Failed to upgrade: installed dnssec-trigger package post-installation script subprocess returned error exit status 1

2019-01-14 Thread Diane Trout
On Tue, 2019-01-15 at 00:08 +0100, Florian Schlichting wrote: > > Before thinking about cleanup, I'd start by making sure that fresh > installs don't re-create problems. At the moment, purging dnssec- > trigger > leaves two keypairs in /etc; and when I rm them manually, and again > install dnssec-

Bug#919256: dnssec-trigger: Failed to upgrade: installed dnssec-trigger package post-installation script subprocess returned error exit status 1

2019-01-14 Thread Diane Trout
On Mon, 2019-01-14 at 21:25 +0100, Florian Schlichting wrote: > Hi, > > in the course of looking into the upgrade failure, I ended up purging > dnssec-trigger and then installed it again. I notice this creates > keys > and config files in both /etc/ and /etc/dnssec-trigger?! Different to > Alex, I

Bug#919256: dnssec-trigger: Failed to upgrade: installed dnssec-trigger package post-installation script subprocess returned error exit status 1

2019-01-14 Thread Diane Trout
On Mon, 2019-01-14 at 14:35 +0100, Axel Beckert wrote: > Hi, > > Axel Beckert wrote: > > The syslog shows again this: > > > > Jan 14 07:18:59 c-cactus2 dnssec-triggerd[22039]: Jan 14 07:18:59 > > dnssec-triggerd[22039] error: Error in SSL_CTX use_certificate_file > > crypto error:140AB18F:SSL rou

Bug#918930: owncloud-client: owncloud client complains about being used with nextcloud server

2019-01-10 Thread Diane Trout
. Should we consider packaging the nextcloud client? It's plausible that the two servers implementation will drift sufficiently far apart to no longer be compatible. Diane Trout -- System Information: Debian Release: buster/sid APT prefers testing-debug APT policy: (500, 'testing-deb

Bug#918204: dask: autopkgtest fails with python-numpy (1:1.16.0~rc1-3)

2019-01-09 Thread Diane Trout
On Fri, 04 Jan 2019 11:27:03 +0100 Bas Couwenberg wrote: > Source: dask > Version: 1.0.0+dfsg-1 > Severity: normal > Control: block 917323 by -1 > > Dear Maintainer, > > The autopkgtest for your package fail with python-numpy > (1:1.16.0~rc1-3), this increased the required age of python-numpy wh

Bug#915981: ITP: dask-sphinx-theme -- This is the official Sphinx theme for Dask documentation.

2018-12-08 Thread Diane Trout
Package: wnpp Severity: wishlist Owner: Diane Trout * Package name: dask-sphinx-theme Version : 1.1.0 Upstream Author : 2018 Dask Developers, Matthew Rocklin * URL : https://github.com/dask/dask-sphinx-theme/ * License : BSD-3 (+non endorsment clause

Bug#913628: dnssec-trigger: segfault after updating package libnm-glib4

2018-11-13 Thread Diane Trout
When you get a chance could you try the second python program as well? I had a hunch the first one would fail, if the second one works that suggests a possible solution. Diane > > --- nmtest.py > > #!/usr/bin/python > > > > import gi > > gi.require_version('NM', '1.0') > > from gi.reposi

Bug#913628: dnssec-trigger: segfault after updating package libnm-glib4

2018-11-13 Thread Diane Trout
On Tue, 2018-11-13 at 18:44 +0100, Daniel Dupont wrote: > Hi, > > On Tue, 2018-11-13 at 09:19 -0800, Diane Trout wrote: > > I thought they weren't supposed to be changing things in stable. I > > don't suppose you could try the version in unstable? > > >

Bug#913628: dnssec-trigger: segfault after updating package libnm-glib4

2018-11-13 Thread Diane Trout
On Tue, 2018-11-13 at 09:44 +0100, Daniel Dupont wrote: > Package: dnssec-trigger > Version: 0.13-6 > Severity: normal > I thought they weren't supposed to be changing things in stable. I don't suppose you could try the version in unstable? Though honestly I need to fix a couple of bugs to relea

Bug#911951: partd autopkg tests need to depend on python3-all

2018-10-26 Thread Diane Trout
On Friday, October 26, 2018 7:51:00 AM PDT you wrote: > Package: src:partd > Version: 0.3.8-1 > Severity: serious > Tags: sid buster > > the partd autopkg tests need to depend on python3-all, same as in the build > dependencies. This will block at least python3-defaults once failing autopkg > test

Bug#911119: pybigwig: Should list python3-all as an explicit test dependency

2018-10-18 Thread Diane Trout
On Monday, October 15, 2018 2:12:32 PM PDT Steve Langasek wrote: > Package: pybigwig > Version: 0.3.11-1 > Severity: minor > Tags: patch > User: ubuntu-de...@lists.ubuntu.com > Usertags: origin-ubuntu cosmic ubuntu-patch > > Hi Diane, > > With a recent upload of python-numpy in Ubuntu, the pybigw

Bug#898969: dnssec-trigger: fails with OpenSSL 1.1.1 due to too-small key

2018-10-01 Thread Diane Trout
On Mon, 2018-09-17 at 09:55 +0800, Paul Wise wrote: > Package: dnssec-trigger > Version: 0.15+repack-1 > Followup-For: Bug #898969 > Control: retitle -1 dnssec-trigger: fails with OpenSSL 1.1.1 due to > too-small key and unknown ca > Control: severity -1 serious > > If I delete the existing keys

Bug#898969: dnssec-trigger: fails with OpenSSL in experimental due to too-small key

2018-10-01 Thread Diane Trout
On Mon, 2018-10-01 at 20:23 +0200, Lee Garrett wrote: > Hi, > > Any update on this bug? dnssec-trigger will be autoremoved due to > this bug > tomorrow. I'd like to see it in buster, though. Ooops I forgot, Also does this bug impact unbound? I tried checking the unbound maintainer scripts and t

Bug#909986: cloudpickle: FTBFS (TypeError: can't pickle _abc_data objects)

2018-10-01 Thread Diane Trout
On Sun, 2018-09-30 at 23:03 +, Santiago Vila wrote: > Package: src:cloudpickle > Version: 0.5.2-2 > Severity: serious > Tags: ftbfs > > Dear maintainer: > > I tried to build this package in buster but it failed: Looks like a python 3.7 incompatibility I updated to cloudpickle 0.5.6 and it s

Bug#908271: plasma-nm: Plasmashell crashes on startup while loading plasma-nm

2018-09-07 Thread Diane Trout
Package: plasma-nm Version: 4:5.13.5-1 Severity: important Dear Maintainer, When attempting to log into a wayland plasma desktop, plasmashell crashes when loading "Network" I assumed that was provided by the plasma-nm component. If I uninstall plasma-nm, plasmashell will then load and run. I tr

Bug#904378: python-graphviz: autopkgtest failure: /usr/bin/python3.6: No module named pytest

2018-07-23 Thread Diane Trout
On Mon, 2018-07-23 at 20:10 +0200, Paul Gevers wrote: > Source: python-graphviz > Version: 0.8.4-1 > X-Debbugs-CC: debian...@lists.debian.org > User: debian...@lists.debian.org > Usertags: regression > > Dear maintainers, > > Thanks for fixing bug 904245 so swiftly. However, your new version > fa

Bug#904304: pytest-mock: New upstream release

2018-07-22 Thread Diane Trout
Source: pytest-mock Version: New upstream release. Severity: normal Dear Maintainer, I was trying to update my package python-graphviz and my tests are failing because they require pytest-mock 1.9. Would you have some time to update the package? If not it looks like I could do a team upload if y

Bug#890967: Updating pexpect

2018-07-01 Thread Diane Trout
On Sun, 2018-07-01 at 09:25 +0200, Tobias Hansen wrote: > Hi, > > > > Please go ahead and prepare the team upload. I'm on vacation at the > moment. > > pexpect 4.6.0-1 has been uploaded, and I hope you have an enjoyable vacation. I also updated the standards version to 4.1.4 (after looking fo

Bug#890967: Updating pexpect

2018-06-30 Thread Diane Trout
f not I could prepare a team upload if you'd like. (I've already built a version locally, and I can see what you mean by the unit tests causing the builds to time out.) Thank you, Diane Trout signature.asc Description: This is a digitally signed message part

Bug#902622: I am also affected by this issue

2018-06-29 Thread Diane Trout
> >ln -s / file: > > is an ugly workaround that does work. In case it isn't obvious to others, this symlink work-around needs to be put in whatever will be the current working directory for firefox. The users' home directory is a good guess. Diane

Bug#901125: npm2deb: npm notice messages confuse npm2deb create

2018-06-08 Thread Diane Trout
ecommends no packages. npm2deb suggests no packages. -- no debconf information >From f51da497495a48aaf33d2c686b4e0f02fc2e8929 Mon Sep 17 00:00:00 2001 From: Diane Trout Date: Fri, 8 Jun 2018 20:08:39 -0700 Subject: [PATCH] Force quiet mode on download --- npm2deb/__init__.py | 2 +- 1 fi

Bug#901077: trickle: New upstream location

2018-06-08 Thread Diane Trout
Package: trickle Version: 1.07-10.1+b1 Severity: minor Dear Maintainer, I was reviewing tracker.debian.org and noticed the watch file wasn't working. Upstream's homepage (matching the start of what's in the watch file): https://monkey.org/~marius/ points to github, and there appears to be a tri

Bug#900535: Binary Independent build seems to have FTBFS

2018-05-31 Thread Diane Trout
Package: src:python3-stdlib-extensions Version: 3.6.4-4 Severity: serious X-Debbugs-CC: debian-pyt...@lists.debian.org Hello, python3-distutils is currently unavailable in unstable, it appears that python3-stdlib-extensions was intended to provided it, but the all architecture package is failing

Bug#900459: dask: Debci regression

2018-05-31 Thread Diane Trout
Hello, Allow me to first say oops, sorry about that. Unfortunately there's something going on with python3-distutils and packages that depend on it (like sphinx) are not installable right now, so I can't test my fixes. Also when I was running the tests locally they'd sometimes throw an exception

Bug#900257: ITP: sphinxcontrib-asyncio -- sphinx extension to support coroutines in markup

2018-05-27 Thread Diane Trout
Package: wnpp Severity: wishlist Owner: Diane Trout * Package name: sphinxcontrib-asyncio Version : 0.2.0 Upstream Author : Andrew Svetlov * URL : https://github.com/aio-libs/sphinxcontrib-asyncio * License : Apache 2.0 Programming Lang: Python

Bug#899421: ITP: hangups -- hangups is the first third-party IM client for Google Hangouts

2018-05-23 Thread Diane Trout
Package: wnpp Severity: wishlist Owner: Diane Trout * Package name: hangups Version : 0.4.4 Upstream Author : Tom Dryer * URL : https://github.com/tdryer/hangups/ * License : MIT Programming Lang: Python Description : hangups is the first third-party

Bug#899399: ITP: reparser -- Simple regex-based lexer/parser for inline markup

2018-05-23 Thread Diane Trout
Package: wnpp Severity: wishlist Owner: Diane Trout * Package name: reparser Version : 1.4.3 Upstream Author : Michal Krenek * URL : https://github.com/xmikos/reparser * License : MIT Programming Lang: Python Description : Simple regex-based lexer

Bug#899398: ITP: readlike -- GNU Readline-like line editing module

2018-05-23 Thread Diane Trout
Package: wnpp Severity: wishlist Owner: Diane Trout * Package name: readlike Version : 0.1.2 Upstream Author : Brandon Mulcahy * URL : https://github.com/jangler/readlike * License : MIT Programming Lang: Python Description : GNU Readline-like line

Bug#898969: dnssec-trigger: fails with OpenSSL in experimental due to too-small key

2018-05-17 Thread Diane Trout
Thank you for the detailed bug report. I'll need to think a bit about the maintainer script... On Fri, 2018-05-18 at 01:27 +, brian m. carlson wrote: > Package: dnssec-trigger > Version: 0.15+repack-1 > Severity: important > > I have two existing installations of dnssec-trigger that have 1

Bug#862757: dnssec-trigger 0.15 release

2018-05-16 Thread Diane Trout
Hello, It took longer than I expected to produce a clean history, with the right maintainer field, in the right repository on salsa. Also I thought I'd pushed it last night, but apparently I'd forgotten to push again after testing with dry-run. I just received the email from ftpmaster saying it

Bug#898781: python-ipywidgets-doc: HTML documentation appears to be missing (All 'Format' sections are invalid)

2018-05-15 Thread Diane Trout
Package: python-ipywidgets-doc Version: 6.0.0-2 Severity: important Dear Maintainer, While installing python-ipywidgets-doc dpkg reported the following error. Processing 1 added doc-base file... Error in `/usr/share/doc-base/python-ipywidgets-doc', line 11: all `Format' sections are invalid.

Bug#862757: Finished patched

2018-05-06 Thread Diane Trout
Just for thoroughness. Here's the final patch that seems to be working. DianeAuthor: Michael Biebl Description: libnm-glib/libnm-util has been deprecated upstream in favour of libnm. --- a/dnssec-trigger-script.in +++ b/dnssec-trigger-script.in @@ -18,9 +18,9 @@ import signal import gi -gi.re

Bug#862757: dnssec-trigger 0.15 release

2018-05-02 Thread Diane Trout
On Wed, 2018-05-02 at 14:09 +0200, Michael Biebl wrote: > Hi Diane > > Am 02.05.2018 um 07:17 schrieb Diane Trout: > > Should I release this version or wait for what Michael did? > > You don't have to wait for me. I provided a patch for the issue for > the > mai

Bug#862757: dnssec-trigger 0.15 release

2018-05-01 Thread Diane Trout
Hi, I put together a potential 0.15 release for dnssec-trigger. I'm not sure how far Michael Biebl got, and I had a little bit of time to clean fix a few issues. I don't have access to the dns team salsa page, so I put the repository in my personal space for the moment. https://salsa.debian.org/

Bug#897141: RM: abstract-rendering/0.5.1-1

2018-04-29 Thread Diane Trout
On Sun, 2018-04-29 at 10:29 +0100, Adam D. Barratt wrote: > Control: tags -1 + moreinfo > > On Sat, 2018-04-28 at 16:45 -0700, Diane Trout wrote: > > Package: release.debian.org > > Severity: normal > > User: release.debian@packages.debian.org > > Usertags:

Bug#897141: RM: abstract-rendering/0.5.1-1

2018-04-28 Thread Diane Trout
Package: release.debian.org Severity: normal User: release.debian@packages.debian.org Usertags: rm Upstream deleted the project. It was a dependency for some of Continuum Analytics other projects, but for whatever reason they decided to drop it. Nothing in Debian has ever depended on this pa

Bug#896219: Added python3-distutils dependency

2018-04-28 Thread Diane Trout
On Sat, 28 Apr 2018 17:40:08 +0200 Matthias Klose wrote: > Control: reopen -1 > Control: severity -1 important > Control: retitle -1 please avoid the usage of distutils at runtime > Control: tags -1 + patch > > While the addition of the dependency fixes the issue, please could you consider > to a

Bug#896219: Added python3-distutils dependency

2018-04-28 Thread Diane Trout
version 0.1.7-2 tags: pending thanks I added python3-distutils as a dependency and that should fix your problem. The new package should show up in unstable in a couple of hours. Diane signature.asc Description: This is a digitally signed message part

Bug#870460: [Pkg-javascript-devel] anyone working on npm?

2018-04-18 Thread Diane Trout
> Sure ! You could work on a branch of npm pkg-javascript repository, > and ask me for reviewing it and merging it. If all goes well, after > that first > review, you'll work directly on master branch. Hi I finally had time to finish producing a hopefully easy to review set of patches. (And went t

Bug#889155: python3-matplotlib: backports.functools_lru_cache, subprocess32 are not python3 depedencies

2018-02-02 Thread Diane Trout
Oops. I got an bounce message from my MTA because of a SPF error, so I thought it hadn't gotten submitted. Sorry about that.

Bug#889155: python3-matplotlib: backports.functools_lru_cache, subprocess32 are not python3 depedencies

2018-02-02 Thread Diane Trout
incorrectly installed in the Python 3 package. Diane Trout -- System Information: Debian Release: buster/sid APT prefers stable-updates APT policy: (500, 'stable-updates'), (500, 'testing'), (500, 'stable') Architecture: amd64 (x86_64) Kernel: Linux 4.9.0-3-amd

Bug#889151: python3-matplotlib: backports.functools_lru_cache, subprocess32 are not Python 3 dependencies

2018-02-02 Thread Diane Trout
is being incorrectly installed in the Python 3 package. Diane Trout -- System Information: Debian Release: buster/sid APT prefers stable-updates APT policy: (500, 'stable-updates'), (500, 'testing'), (500, 'stable') Architecture: amd64 (x86_64) Kernel: Linux 4.9

Bug#871502: Updating zotero-standalone

2018-01-30 Thread Diane Trout
> So I understand from your message that the main blocker is now to > have npm > updated. The other issue is their default build process appears to download Firefox and extract and modify parts of it. That needs to be modified to use Debian's version of Firefox, but I haven't figured out how yet

Bug#761404: minor Incompatibility between apparmor profile & tor configuration file

2018-01-26 Thread Diane Trout
Hi, My system copy of tor wasn't starting in the background. It was because I'd put some customizations into /etc/torrc.custom, (as suggested by the comments at the bottom of /etc/tor/torrc. However the apparmor profile in (abstractions/system_tor) limit tor to be able to only read /etc/tor/. Co

Bug#870460: anyone working on npm?

2018-01-23 Thread Diane Trout
Hello, I was looking to update zotero, which needs a newer npm. I was curious, so I tried building a npm using upstream's 5.6.0, and I have something that almost installs & runs. Several dependencies are out of date in Debian, and there's still a fair number of node_modules that don't seem to ha

Bug#871502: Updating zotero-standalone

2018-01-23 Thread Diane Trout
> > Thanks for your contribution. However note that we cannot use your > packaging > for the official Debian package, because AFAIK npm downloads the > javascript > libraries at build time, which is clearly not acceptable in Debian. > The full > source needs to be included in the tarball (and the

Bug#884482: linux-image-4.13.0-1-amd64: KVM module doesn't load: ERROR: could not insert 'kvm_intel': Input/output error

2017-12-15 Thread Diane Trout
Package: src:linux Version: 4.13.13-1 Severity: normal Dear Maintainer, After booting into 4.13.13 my kvm based virutual hosts wouldn't load any longer. root:~# kvm Could not access KVM kernel module: No such file or directory qemu-system-x86_64: failed to initialize KVM: No such file or directo

Bug#883782: src:cloudpickle: New upstream release

2017-12-07 Thread Diane Trout
On Thu, 2017-12-07 at 14:32 +, Ghislain Antony Vaillant wrote: > Package: src:cloudpickle > Severity: wishlist > > Dear Maintainer, > > Please consider upgrading the packaging to the latest version (0.5.2 > at > the time of writing). > > Thanks, > Ghis I know I need to update dask as 0.15.

Bug#879886: libhts2: libhts2 needs to handle ABI changes

2017-11-09 Thread Diane Trout
> As a gotcha, remember that this bug was born out of the fact that > there > was a package requiring a >= 1.5 dependency. I recommend you compile > the symbol file with something << 1.5 (i.e. 1.4 or just re-add the > file > that was removed) and then update it appropriately so there will be > no

Bug#879886: [Debian-med-packaging] Bug#879886: libhts2: libhts2 needs to handle ABI changes

2017-11-08 Thread Diane Trout
On Thu, 2017-11-09 at 02:03 -0500, Afif Elghraoui wrote: > > - TODO Split private cram headers off into a new libhts-private-dev > > package > > I'd rather be in favor of restoring the bundled htslib to seqlib as > the short term solution. Putting a private package in the archive may > exacerbate

Bug#879886: [Debian-med-packaging] Bug#879886: libhts2: libhts2 needs to handle ABI changes

2017-11-08 Thread Diane Trout
One of the htslib developers filed a new bug, https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=881170 asking us to not make their private libraries public. His suggestions are fairly similar to whats Charles proposed. What I'm thinking is: - TODO Recommit symbols file - TODO Split private cram

Bug#879886: [Debian-med-packaging] libhts2: libhts2 needs to handle ABI changes

2017-11-07 Thread Diane Trout
Hi everyone, I talked some with upstream about the symbols issues with htslib2 https://github.com/samtools/htslib/issues/616 They think that cram/*.h are private headers, but because we have a policy of avoiding convenience copies we made those functions public[1] because a few applications embe

Bug#879886: [Debian-med-packaging] libhts2: libhts2 needs to handle ABI changes

2017-11-03 Thread Diane Trout
> I believe that adding the symbols file back in is the correct solution. > It should allow dpkg-shlibdeps to generate the correct libhst2 > dependencies version. > > Diane > > Graham pointed out there was a symbols file from 1.2 that was removed. I restored it with git-revert and rebuilt 1.

Bug#879886: [Debian-med-packaging] libhts2: libhts2 needs to handle ABI changes

2017-11-03 Thread Diane Trout
> Would adding a symbols file back to the htslib packaging be an > alternative solution to manually overriding ${shlibs:Depends} in > samtools, bcftools, and python-pysam? The build-depends in these > packages are always versioned appropriately. > I believe that adding the symbols file back in is

Bug#879886: libhts2: libhts2 needs to handle ABI changes

2017-10-26 Thread Diane Trout
Package: libhts2 Version: 1.5-1 Severity: critical Dear Maintainer, libhts2 introduced an ABI change which broke python-pysam, and a new version of python-pysam needed to be released to update to the new ABI. libhts2 probably needs a proper symbols file to make it easier to see when the ABI is c

Bug#879867: python3-pysam: import pysam throws ImportError undefined symbol: hts_log

2017-10-26 Thread Diane Trout
Package: python3-pysam Version: 0.12.0.1+ds-3 Severity: normal Dear Maintainer, Importing pysam on testing in either python2 or python3 fails with this error. python3 -c 'import pysam' Traceback (most recent call last): File "", line 1, in File "/usr/lib/python3/dist-packages/pysam/__init__

Bug#879226: python-pandas-doc: Pandas doc package should register documentation with doc-base

2017-10-20 Thread Diane Trout
Package: python-pandas-doc Version: 0.19.2-5.1 Severity: wishlist Dear Maintainer, I have one of the debian documentation browsers working and it doesn't know there is pandas documentation is installed. See Debian policy 9.10 Registering Documents using doc-base Diane -- System Information: De

Bug#879159: ipython3: Using ? to get a docstring sometimes causes an AssertionError

2017-10-19 Thread Diane Trout
Package: ipython3 Version: 5.1.0-3 Severity: normal Dear Maintainer, I was trying to understand a module and when I hit a ? ipython3 exited with the traceback below. I looked at https://github.com/ipython/ipython/issues/10381 And have a quick reproducer. import numpy x = numpy.z (Autocomplete

Bug#566364: doc-central

2017-10-11 Thread Diane Trout
Hi, I wanted to be able to browse documentation locally, and the Python viewer doc-central is abandoned. What I have so far is a Python 3 version using CGI scripts. What I'd like is something uses wsgi and can run with Python's built-in wsgiref server instead of requiring a full web server. (mayb

Bug#877754: python3-pandas: pandas FTBFS on several architectures because NaT seems to behave differently

2017-10-04 Thread Diane Trout
Package: python3-pandas Version: 0.20.3-3 Severity: normal Dear Maintainer, Several architectures failed with pandas 0.20.3-3, It appears that some datetime tests behaves differently on ARM & MIPS. Diane -- System Information: Debian Release: buster/sid APT prefers testing-debug APT policy

Bug#877145: evolution-data-server: Evolution can't update radicale calendar events error code 411 Length required

2017-09-28 Thread Diane Trout
> > I tried building a copy of evolution-data-server with the patch in > 3.26.0, but it didn't work for me. Although maybe I need to reboot. I apparently hadn't installed enough evolution-data-server packages, or hadn't restarted them. after installing more things and killing more e- d-s process

Bug#877145: evolution-data-server: Evolution can't update radicale calendar events error code 411 Length required

2017-09-28 Thread Diane Trout
Package: evolution-data-server Version: 3.26.0-1 Severity: normal Dear Maintainer, A recent upgrade broke Evolutions ability to update calendar events on the radicale caldav server. The underlying problem is due to evolution-data-server gaining support for Transport-encoding: chunked, and radica

Bug#877027: python3-requests: Please provide a -doc package

2017-09-27 Thread Diane Trout
Package: python3-requests Version: 2.18.1-1 Severity: wishlist Dear Maintainer, Please provide a requests documentation package. It looks like requests is one of the packages where upstream doesn't ship the documentation files in the source package uploaded to pypi. It is available from the rel

Bug#876417: python3-pandas: Use Debian built inter-Sphinx files

2017-09-21 Thread Diane Trout
Package: python3-pandas Version: 0.20.3-1 Severity: wishlist Dear Maintainer, While debugging the docs build for process for pandas, I noticed that make.py downloaded intersphinx files for several dependencies. The intersphinx files help provide useful crossrefernces between the documentation pa

Bug#876399: pbuilder: B20autopkgtest hook script uses removed adt-run commands

2017-09-21 Thread Diane Trout
On Thu, 2017-09-21 at 20:57 +0200, Mattia Rizzolo wrote: > On Thu, Sep 21, 2017 at 11:14:05AM -0700, Diane Trout wrote: > > I was trying to build some packages in sid and discovered that the > > chroot B20autopkgtest hook script was using /usr/bin/adt-run which > > ha

Bug#876399: pbuilder: B20autopkgtest hook script uses removed adt-run commands

2017-09-21 Thread Diane Trout
Package: pbuilder Version: 0.228.8 Severity: normal Dear Maintainer, I was trying to build some packages in sid and discovered that the chroot B20autopkgtest hook script was using /usr/bin/adt-run which has been removed in autopkgtest 5.0 Should autopkgtest have a Breaks: pbuilder (<= 0.228.8)?

Bug#875807: Patch to fix timezone failures

2017-09-20 Thread Diane Trout
:00:00 2001 From: Diane Trout Date: Wed, 20 Sep 2017 23:33:17 -0700 Subject: [PATCH 4/4] Add dateutil-2.6.1-fixed-ambiguous-tz-dst-be.patch (Closes: #875807) --- debian/changelog | 1 + .../dateutil-2.6.1-fixed-ambiguous-tz-dst-be.patch |

Bug#875805: Using build profile to break circular dependency

2017-09-20 Thread Diane Trout
There's a good chance that more packages could be marked !nodoc or !nocheck. Only tricky thing was copying settings from DEB_BUILD_PROFILES to the older DEB_BUILD_OPTIONS. DianeFrom 6a57a01e7c92d23c0cdf7c110d1a0869ef0348f4 Mon Sep 17 00:00:00 2001 From: Diane Trout Date: Wed, 20 Sep 2017

Bug#729956: Python 3 Statsmodels & Pandas

2017-09-16 Thread Diane Trout
On Sat, 2017-09-16 at 22:59 +0200, Yuri D'Elia wrote: > On Sat, Sep 16 2017, Diane Trout wrote: > > python3-pandas: Pandas is not installable > > https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=875723 > > I would have expected the rebuild of python packages affected

Bug#729956: Python 3 Statsmodels & Pandas

2017-09-16 Thread Diane Trout
Hi, Just wanted to give a progress report I was able to build a python 3 version of statsmodels, however I wasn't able to build it against the version of pandas in sid because pandas can't be installed. python3-pandas: Pandas is not installable https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=8

Bug#875807: python3-pandas: FTBFS: 3 timezone unit tests fail

2017-09-14 Thread Diane Trout
Package: python3-pandas Version: 0.20.3-1 Severity: normal Dear Maintainer, While trying to rebuild pandas, 3 unit tests fail, they also fail in a virtual env with a pip installed copy of pandas. I suspect it upstreams problem. I was thinking of disabling the 3 tests and asking for upstreams adv

Bug#875805: python3-pandas: Please break circular dependency

2017-09-14 Thread Diane Trout
Package: python3-pandas Version: 0.20.3-1 Severity: wishlist Dear Maintainer, When trying to rebuild pandas, it build-depends on statsmodels which also build-depends on pandas. Statsmodels is only needed to run a few pandas tests and could be resolved either via a build profile or disabling test

Bug#875723: python3-pandas: Pandas is not installable

2017-09-13 Thread Diane Trout
Package: python3-pandas Version: 0.19.2-5.1 Severity: serious Dear Maintainer, When trying to build statsmodels in a sid chroot I wasn't able to install python-pandas-lib because libpython2.7-stdlib declares a breaks on python-pandas-lib (<= 0.20.3-1) also python3-stdlib declares a breaks on py

Bug#729956: Forwarded upstream

2017-09-07 Thread Diane Trout
Hi I pushed my work to alioth on the branch detrout-python3 I modified the statsmodels build recipe to at least partially use pybuild, and the documentation build uses python 3 components instead of python 2. I skipped the 4 tests that failed for me, that had an upstream bug report, when a new v

Bug#873105: find-file-in-project/5.4.3-1 [ITP]

2017-09-07 Thread Diane Trout
On Thu, 2017-09-07 at 09:55 -0400, Nicholas D Steeves wrote: > Hi Diane, > > Welcome to the pkg-emacsen team! :-) Thank you :) > > If sponsoring from git, please use commit b58d0e6 > If sponsoring from mentors, here is the updated link: > https://mentors.debian.net/debian/pool/main/f/find-file-

Bug#729956: Forwarded upstream

2017-09-06 Thread Diane Trout
On Thu, 2017-09-07 at 06:20 +0200, Andreas Tille wrote: > Hi Diane, > > On Wed, Sep 06, 2017 at 02:45:14PM -0700, Diane Trout wrote: > > > > > but the build failed (for other reasons).  I'd willing to work on > > > this > > > but I definitel

Bug#729956: Forwarded upstream

2017-09-06 Thread Diane Trout
> but the build failed (for other reasons).  I'd willing to work on > this > but I definitely need help since I'm lacking the needed Python > knowledge. Hi, I saw your debian-python3 branch for statsmodels. The dependencies added in the package should probably be added as build-dependencies. an

Bug#873105: find-file-in-project/5.4.2-1 [ITP]

2017-09-06 Thread Diane Trout
On Wed, 2017-09-06 at 12:59 -0400, Nicholas D Steeves wrote: > P.S. I've also updated standards version (no changes needed) and > changed the watch file to no longer use the git method.  Updated > links > for dget should appear here in the next few minutes: > > https://mentors.debian.net/debian/po

Bug#873105: find-file-in-project

2017-09-05 Thread Diane Trout
Reviewed by Diane Trout: * The copyright file looks correct. * The source tree matches what I downloaded * The one patch removes a network request. * Lintian warnings are just missing gpg signature and upstream changelog * I built the package and installed it, and ran it in emacs. I had trouble

Bug#861174: Elpy update, and Re: Bug#861174: importmagic

2017-09-05 Thread Diane Trout
> If you've already looked at find-file-in-project, would you please > add > a "Reviewed by" to #873105?  I suspect that might speed things along. I added a reviewed by to the bug. It looked like more of the tests ran with the new upstream release 5.4.1 than with 5.4.0 with emacs25. (from a fre

Bug#873124: [Pkg-telepathy-maintainers] Bug#873124: telepathy-gabble: Unable to add jabber/XMPP account

2017-08-24 Thread Diane Trout
Are you using kde-telepathy or empathy? These instructions should work. https://squaremotion.blogspot.com/2011/11/xmpp-support-for-n9.html You might also try configuring the account via ktp or empathy instead of online accounts. some of the configuration files specifying what services are avail

Bug#861174: Elpy update, and Re: Bug#861174: importmagic

2017-08-19 Thread Diane Trout
;> On Fri, Aug 18, 2017 at 04:31:05PM -0700, Diane Trout wrote: >>> >>> I packaged importmagic and it's in new right now. >>> https://ftp-master.debian.org/new/importmagic_0.1.7-1.html >>> >>> Though following current policy I default to only b

Bug#861174: importmagic

2017-08-18 Thread Diane Trout
Hi, I packaged importmagic and it's in new right now. https://ftp-master.debian.org/new/importmagic_0.1.7-1.html Though following current policy I default to only building the Python 3 version. Diane

Bug#872183: RFP: importmagic -- Python library for finding unresolved symbols and managing imports

2017-08-14 Thread Diane Trout
On Mon, 2017-08-14 at 19:22 -0400, Nicholas D Steeves wrote: > Package: wnpp > Severity: wishlist > > * Package name: importmagic >   Version : 0.1.7 >   Upstream Author : Alec Thomas > * URL : https://github.com/alecthomas/importmagic > * License : BSD-2-Clause >

Bug#871785: python3-dask: Version 0.15.1-2 not working

2017-08-11 Thread Diane Trout
Version: 0.15.1-3 tags: pending Thank you for your report, sorry about the mistake. It looks like this problem is fixed in 0.15.1-3 Diane On Fri, 2017-08-11 at 15:41 +0100, magnunor wrote: > Package: python3-dask > Version: 0.15.1-1 > Severity: important > > Dear Maintainer, > > The current

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