Bug#1031880: unattended-upgrades: requires on_ac_power from package powermgmt-base to function at all

2023-02-25 Thread Steve Lane
Hi Jochen,

Thanks very much for looking into this so quickly. On a machine with root's
$PATH set to the default value:

/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin

Without powermgmt-base installed, I am seeing the following:

root# which -a on_ac_power
root#

(i.e. an executable on_ac_power is not found anywhere in root's $PATH), and;

root# for p in $( echo $PATH | sed 's/:/ /g' ) ; do ls -l ${p}/on_ac_power
; done
ls: cannot access '/usr/local/sbin/on_ac_power': No such file or directory
ls: cannot access '/usr/local/bin/on_ac_power': No such file or directory
ls: cannot access '/usr/sbin/on_ac_power': No such file or directory
ls: cannot access '/usr/bin/on_ac_power': No such file or directory
ls: cannot access '/sbin/on_ac_power': No such file or directory
ls: cannot access '/bin/on_ac_power': No such file or directory
root#

(i.e. as far as I am able to determine, there is no on_ac_power file in root's
$PATH without powermgmt-base installed on this machine).

Note that, in this situation, I am seeing the following:

root# which unattended-upgrade
/usr/bin/unattended-upgrade
root# unattended-upgrade
root#

(i.e. normal / expected behavior from unattended-upgrade).

After installing powermgmt-base, I see the following:

root# which -a on_ac_power
/usr/sbin/on_ac_power
/usr/bin/on_ac_power
/sbin/on_ac_power
/bin/on_ac_power
root# for p in $( echo $PATH | sed 's/:/ /g' ) ; do ls -l ${p}/on_ac_power
; done
ls: cannot access '/usr/local/sbin/on_ac_power': No such file or directory
ls: cannot access '/usr/local/bin/on_ac_power': No such file or directory
-rwxr-xr-x 1 root root 2228 Jul 20  2019 /usr/sbin/on_ac_power
lrwxrwxrwx 1 root root 17 Jul 20  2019 /usr/bin/on_ac_power ->
/sbin/on_ac_power
-rwxr-xr-x 1 root root 2228 Jul 20  2019 /sbin/on_ac_power
lrwxrwxrwx 1 root root 17 Jul 20  2019 /bin/on_ac_power -> /sbin/on_ac_power

and unattended-upgrade continues to behave normally.

I suspect that what happened was, on the machines I was testing on,
incomplete uninstalls of powermgmt-base resulted in the executables being
removed, but the links in /usr/bin and/or /bin to remain, creating the
problem I was seeing.

(I have a very slight idea how this might have happened, but that is a
separate issue.)

I think your recommended solution under these circumstances is the right
one. Thanks again very much for looking into this. Please feel free to
close this ticket (if you have not done so already).

Best,
--
Steve Lane

On Sat, Feb 25, 2023 at 12:21 AM Jochen Sprickerhof 
wrote:

> Hi Steve,
>
> * Steve Lane  [2023-02-24 09:23]:
> >Currently unattended-upgrades marks the powermgmt-base package
> >as Suggested. powermgmt-base provides the /sbin/on_ac_power and
> >/usr/sbin/on_ac_power script(s), which unattended-upgrades requires to
> >function at all, because of this check in /usr/bin/unattended-upgrade
> >at line 676:
> >
> >if apt_pkg.config.find_b("Unattended-Upgrade::OnlyOnACPower", True) \
> >   and subprocess.call("on_ac_power") == 1:
> >
> >The absence of the powermgmt-base package, and thus the on_ac_power
> >script, results in the following error:
> >
> >root# /usr/bin/unattended-upgrade
> >Traceback (most recent call last):
> >  File "/usr/bin/unattended-upgrade", line 2522, in 
> >sys.exit(main(options))
> >  File "/usr/bin/unattended-upgrade", line 1993, in main
> >res = run(options, rootdir, mem_log, logfile_dpkg,
> >  File "/usr/bin/unattended-upgrade", line 2061, in run
> >if should_stop():
> >  File "/usr/bin/unattended-upgrade", line 676, in should_stop
> >and subprocess.call("on_ac_power") == 1:
> >  File "/usr/lib/python3.9/subprocess.py", line 349, in call
> >with Popen(*popenargs, **kwargs) as p:
> >  File "/usr/lib/python3.9/subprocess.py", line 951, in __init__
> >self._execute_child(args, executable, preexec_fn, close_fds,
> >  File "/usr/lib/python3.9/subprocess.py", line 1823, in _execute_child
> >raise child_exception_type(errno_num, err_msg, err_filename)
> >PermissionError: [Errno 13] Permission denied: 'on_ac_power'
>
> I can't reproduce this error on a fresh stable nor unstable VM without
> powermgmt-base installed.
>
> >(Note that it's not clear to me why this is a PermissionError, since
> >the script doesn't actually exist, but that is a secondary point.)
>
> But this makes it reproducible:
>
> touch /usr/bin/on_ac_power
>
> So I guess you have a non executable on_ac_power in your $PATH.
>
> >The powermgmt-base package needs to be installed in order for
> >unattended-upgrades to function at all. Thus, the powermgmt-base package
> >needs to be marked as Depends for unattended-upgrades.
>
> I disagree and propose this patch instead:
>
> https://github.com/mvo5/unattended-upgrades/pull/341
>
> Cheers Jochen
>


Bug#1031880: unattended-upgrades: requires on_ac_power from package powermgmt-base to function at all

2023-02-24 Thread Steve Lane
Package: unattended-upgrades
Version: 2.8
Severity: grave
Justification: renders package unusable

Dear Maintainer,

   * What led up to the situation?

Currently unattended-upgrades marks the powermgmt-base package
as Suggested. powermgmt-base provides the /sbin/on_ac_power and
/usr/sbin/on_ac_power script(s), which unattended-upgrades requires to
function at all, because of this check in /usr/bin/unattended-upgrade
at line 676:

if apt_pkg.config.find_b("Unattended-Upgrade::OnlyOnACPower", True) \
   and subprocess.call("on_ac_power") == 1:

The absence of the powermgmt-base package, and thus the on_ac_power
script, results in the following error:

root# /usr/bin/unattended-upgrade
Traceback (most recent call last):
  File "/usr/bin/unattended-upgrade", line 2522, in 
sys.exit(main(options))
  File "/usr/bin/unattended-upgrade", line 1993, in main
res = run(options, rootdir, mem_log, logfile_dpkg,
  File "/usr/bin/unattended-upgrade", line 2061, in run
if should_stop():
  File "/usr/bin/unattended-upgrade", line 676, in should_stop
and subprocess.call("on_ac_power") == 1:
  File "/usr/lib/python3.9/subprocess.py", line 349, in call
with Popen(*popenargs, **kwargs) as p:
  File "/usr/lib/python3.9/subprocess.py", line 951, in __init__
self._execute_child(args, executable, preexec_fn, close_fds,
  File "/usr/lib/python3.9/subprocess.py", line 1823, in _execute_child
raise child_exception_type(errno_num, err_msg, err_filename)
PermissionError: [Errno 13] Permission denied: 'on_ac_power'

(Note that it's not clear to me why this is a PermissionError, since
the script doesn't actually exist, but that is a secondary point.)

The powermgmt-base package needs to be installed in order for
unattended-upgrades to function at all. Thus, the powermgmt-base package
needs to be marked as Depends for unattended-upgrades.

   * What exactly did you do (or not do) that was effective (or
     ineffective)?

Installing the powermgmt-base package makes the problem go away.

Thanks much,
--
Steve Lane
sdl...@lbl.gov

-- System Information:
Debian Release: 11.6
  APT prefers stable-updates
  APT policy: (500, 'stable-updates'), (500, 'stable-security'), (500, 'stable')
Architecture: amd64 (x86_64)

Kernel: Linux 5.10.0-21-amd64 (SMP w/4 CPU threads)
Locale: LANG=en_US.UTF-8, LC_CTYPE=en_US.UTF-8 (charmap=UTF-8), LANGUAGE not set
Shell: /bin/sh linked to /bin/dash
Init: systemd (via /run/systemd/system)

Versions of packages unattended-upgrades depends on:
ii  debconf [debconf-2.0]  1.5.77
ii  lsb-base   11.1.0
ii  lsb-release11.1.0
ii  python33.9.2-3
ii  python3-apt2.2.1
ii  python3-dbus   1.2.16-5
ii  python3-distro-info1.0
ii  ucf3.0043
ii  xz-utils   5.2.5-2.1~deb11u1

Versions of packages unattended-upgrades recommends:
ii  cron [cron-daemon]  3.0pl1-137
ii  systemd-sysv247.3-7+deb11u1

Versions of packages unattended-upgrades suggests:
ii  bsd-mailx  8.1.2-0.20180807cvs-2
ii  needrestart3.5-4+deb11u2
ii  nullmailer [mail-transport-agent]  1:2.2-3
ii  powermgmt-base 1.36
pn  python3-gi 

-- debconf information:
* unattended-upgrades/origins_pattern: 
"origin=Debian,codename=${distro_codename},label=Debian-Security";
* unattended-upgrades/enable_auto_updates: true



Bug#761134: libsbml5-perl: Depends on libperl5.18 but should be libperl5.20 now

2014-09-10 Thread Steve Lane
Package: libsbml5-perl
Version: 5.8.0-2+b1
Severity: important

Dear Maintainer,

libperl5.18 is no longer available:

root apt-show-versions -a libperl5.18
libperl5.18:amd64 5.18.2-7 install ok installed
No stable version
No testing version
No unstable version
libperl5.18:amd64 5.18.2-7 installed: No available version in archive

but upgrading to 5.20 will uninstall libsbml5-perl because of the dependency.

Thanks/best,

--
Steve Lane
System Administrator, Scientific Computing
Joint BioEnergy Institute
Lawrence Berkeley National Laboratory


-- System Information:
Debian Release: 7.6
  APT prefers stable
  APT policy: (990, 'stable'), (900, 'testing'), (800, 'unstable')
Architecture: amd64 (x86_64)

Kernel: Linux 3.14-2-amd64 (SMP w/1 CPU core)
Locale: LANG=en_US.UTF-8, LC_CTYPE=en_US.UTF-8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash

Versions of packages libsbml5-perl depends on:
ii  libbz2-1.0  1.0.6-4
ii  libc6   2.19-9
ii  libgcc1 1:4.9.1-4
ii  libperl5.18 5.18.2-7
ii  libstdc++6  4.9.1-4
ii  libxml2 2.8.0+dfsg1-7+wheezy1
ii  perl5.18.2-7
ii  perl-base [perlapi-5.18.2]  5.18.2-7
ii  zlib1g  1:1.2.7.dfsg-13

libsbml5-perl recommends no packages.

libsbml5-perl suggests no packages.

-- no debconf information


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Bug#760601: systemd: dist-upgrade wants to install systemd with no dependencies

2014-09-05 Thread Steve Lane
Package: systemd
Severity: serious
Justification: 2

Dear Maintainer,

After doing 'atp-get update' and 'sync-available' against:

deb http://security.debian.org/ stable/updates  main contrib non-free

deb http://security.debian.org/ testing/updates main contrib non-free
deb-src http://security.debian.org/ testing/updates main contrib non-free

deb http://ftp.debian.org/debian/   stable main non-free contrib
deb-src http://ftp.debian.org/debian/   stable main non-free contrib

deb http://ftp.debian.org/debian/   testing main non-free contrib
deb-src http://ftp.debian.org/debian/   testing main non-free contrib

'apt-get upgrade' shows no upgrades:

root apt-get upgrade
Reading package lists... Done
Building dependency tree
Reading state information... Done
0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.

nor does 'apt-show-versions -u', but 'apt-get dist-upgrade' tries to
install systemd and dependencies:

root apt-get dist-upgrade
Reading package lists... Done
Building dependency tree
Reading state information... Done
Calculating upgrade... Done
The following NEW packages will be installed:
  libaudit0 libcryptsetup4 libsystemd-daemon0 libsystemd-id128-0 
libsystemd-journal0 libsystemd-login0 systemd
0 upgraded, 7 newly installed, 0 to remove and 0 not upgraded.
Need to get 0 B/1,715 kB of archives.
After this operation, 4,480 kB of additional disk space will be used.
Do you want to continue [Y/n]? n
Abort.

This seems incorrect behavior.

Please note that if I remove:

deb http://ftp.debian.org/debian/   testing main non-free contrib
deb-src http://ftp.debian.org/debian/   testing main non-free contrib

from the sources list this behavior goes away:

root@lims:/linux/debian/pkglists# apt-get dist-upgrade
Reading package lists... Done
Building dependency tree
Reading state information... Done
Calculating upgrade... Done
0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.

This machine (and *many* others we have) is Debian Stable (7.6 - see
below), and it seems incorrect to me that a dist-upgrade should be trying
install new packages when there is no apparent dependency for them.
The only packages that seem like they might remotely be causing this
are udev  libudev0, but they are at the current stable versions (and
libudev1 is not installed):

root apt-show-versions -a udev
udev 175-7.2 install ok installed
udev 175-7.2 stable  ftp.debian.org
udev 208-8   testing ftp.debian.org
udev/stable uptodate 175-7.2

root apt-show-versions -a libudev0
libudev0 175-7.2 install ok installed
libudev0 175-7.2 stable ftp.debian.org
No testing version
libudev0/stable uptodate 175-7.2

root apt-show-versions -a libudev1
Not installed
No stable version
libudev1 208-8 testing ftp.debian.org
libudev1 not installed

I am very concerned about this because it seems apparent that
accidentally installing systemd will render my machine(s) unbootable;
see https://bugs.debian.org/757588 (and I have no desire to install or
use systemd regardless).

Thanks/best,

--
Steve Lane
System Administrator, Scientific Computing
Joint BioEnergy Institute
Lawrence Berkeley National Laboratory



-- System Information:
Debian Release: 7.6
  APT prefers stable
  APT policy: (990, 'stable'), (900, 'testing')
Architecture: amd64 (x86_64)

Kernel: Linux 3.2.0-4-amd64 (SMP w/8 CPU cores)
Locale: LANG=en_US.UTF-8, LC_CTYPE=en_US.UTF-8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash

Versions of packages systemd depends on:
ii  dpkg 1.16.15
ii  initscripts  2.88dsf-41+deb7u1
ii  libacl1  2.2.51-8
pn  libaudit0none
ii  libc62.13-38+deb7u4
ii  libcap2  1:2.22-1.2
pn  libcryptsetup4   none
ii  libdbus-1-3  1.6.8-1+deb7u3
ii  libkmod2 9-3
ii  liblzma5 5.1.1alpha+20120614-2
ii  libpam0g 1.1.3-7.1
ii  libselinux1  2.1.9-5
pn  libsystemd-daemon0   none
pn  libsystemd-id128-0   none
pn  libsystemd-journal0  none
pn  libsystemd-login0none
ii  libudev0 175-7.2
ii  libwrap0 7.6.q-24
ii  udev 175-7.2
ii  util-linux   2.20.1-5.3

Versions of packages systemd recommends:
pn  libpam-systemd  none

Versions of packages systemd suggests:
ii  python2.7.3-4+deb7u1
pn  python-cairo  none
pn  python-dbus   none
pn  systemd-gui   none


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Bug#760601: systemd: dist-upgrade wants to install systemd with no dependencies

2014-09-05 Thread Steve Lane
Dear Maintainer,

It appears that this issue is related to the one in
https://bugs.debian.org/747535 , about which there is ongoing discussion,
so if possible the information in this bug should probably be folded
into the 747535 bug report and this bug can be closed.

Thank you/best,

--
Steve Lane
System Administrator, Scientific Computing
Joint BioEnergy Institute
Lawrence Berkeley National Laboratory


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Bug#758987: qiime: Can't upgrade - pynast 1.2.2 does not exist

2014-08-23 Thread Steve Lane
Package: qiime
Version: 1.8.0+dfsg-2
Severity: normal

Dear Maintainer Folks,

I am trying to upgrade qiime to 1.8.0+dfsg-4, but I get:

qiime : Depends: pynast (= 1.2.2) but 1.2-1 is to be installed

and:

# apt-show-versions -a pynast
pynast 1.2-1 install ok installed
pynast 1.1-3 stable   ftp.debian.org
pynast 1.2-1 testing  ftp.debian.org
pynast 1.2-1 unstable ftp.debian.org
pynast/testing uptodate 1.2-1

(which is also what packages.debian.org reports)

I also see the following on packages.debian.org:

testing migration
excuses:
9 days old (needed 5 days)
qiime/i386 unsatisfiable Depends: pynast (= 1.2.2)
qiime/amd64 unsatisfiable Depends: pynast (= 1.2.2)
qiime/armel unsatisfiable Depends: pynast (= 1.2.2)
qiime/armhf unsatisfiable Depends: pynast (= 1.2.2)
qiime/kfreebsd-amd64 unsatisfiable Depends: pynast (= 1.2.2)
qiime/kfreebsd-i386 unsatisfiable Depends: pynast (= 1.2.2)
qiime/mips unsatisfiable Depends: pynast (= 1.2.2)
qiime/mipsel unsatisfiable Depends: pynast (= 1.2.2)
qiime/powerpc unsatisfiable Depends: pynast (= 1.2.2)
qiime/s390x unsatisfiable Depends: pynast (= 1.2.2)
Valid candidate

so perhaps you already know about this.

Thanks much/best,

--
Steve Lane
System Administrator, Scientific Computing
Joint BioEnergy Institute
Lawrence Berkeley National Laboratory


-- System Information:
Debian Release: 7.6
  APT prefers stable
  APT policy: (990, 'stable'), (900, 'testing'), (800, 'unstable')
Architecture: amd64 (x86_64)

Kernel: Linux 3.2.0-4-amd64 (SMP w/64 CPU cores)
Locale: LANG=en_US.UTF-8, LC_CTYPE=en_US.UTF-8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash

Versions of packages qiime depends on:
ii  king2.21.120420-2
ii  libc6   2.19-9
ii  libffi6 3.1-2
ii  libgmp102:6.0.0+dfsg-6
ii  pynast  1.2-1
ii  python  2.7.8-1
ii  python-biom-format  2.1+dfsg-1
ii  python-cogent   1.5.3-2
ii  python-qcli 0.1.0-1

Versions of packages qiime recommends:
pn  ampliconnoise  none
ii  blast2 1:2.2.26.20120620-2
pn  cd-hit none
pn  chimeraslayer  none
pn  fasttree   none
pn  infernal   none
ii  libjs-jquery   1.7.2+dfsg-1
ii  muscle 1:3.8.31-1
ii  python-matplotlib  1.3.1-2
pn  python-mpi4py  none
ii  python-numpy   1:1.8.2-1

Versions of packages qiime suggests:
pn  cytoscape   none
pn  rdp-classifier  none
pn  t-coffeenone
pn  torque-client   none

-- no debconf information


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Bug#758987: qiime: Can't upgrade - pynast 1.2.2 does not exist

2014-08-23 Thread Steve Lane
Hi Andreas,

Sounds good.  

Thanks very much/best,

--
Steve Lane
System Administrator, Scientific Computing
Joint BioEnergy Institute
Lawrence Berkeley National Laboratory


On Aug 23 19:03, Andreas Tille wrote:
 Hi Steve,
 
 thanks for your bug report.  I was woncering myself why pynast 1.2.2 is
 not yet available.  At first I thought I would have missed the final
 upload and uploaded again - than I notices that the package is in new
 queue since I renamed the source package to reflect the binary name
 (source was python-pynast for no good reason and I renamed it to
 pynast).
 
 I guess it will be available soon and will close the bug than.
 
 Kind regards
 
   Andreas.
 
 PS: Thorsten, a similarly simple package is r-cran-qtl which is also
 only renamed (from qtl).
 


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Bug#750630: python-matplotlib: Default backend 'tkagg' broken

2014-06-11 Thread Steve Lane
Hello,

I am wondering if there will be an update to the package released soon.

Thanks/best,

--
Steve Lane
System Administrator, Scientific Computing
Joint BioEnergy Institute
Lawrence Berkeley National Laboratory


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Bug#742754: qiime: When installing, get: W: pycompile:160: dangling symlink skipped: /usr/lib/qiime/bin/add_metadata.py

2014-03-27 Thread Steve Lane
Hello,

I originally installed qiime version 1.7 on several machines which had not
previously had qiime installed on them at all.  When I did the original
installs, I received the following warning during all of them:

W: pycompile:160: dangling symlink skipped: /usr/lib/qiime/bin/add_metadata.py 
(../../../bin/add_biom_metadata)

I have since upgraded qiime to the version reported in the bug report
(1.8.0+dfsg-2).  I do not recall if I received the same warning when
doing the upgrade from 1.7 to 1.8, but I don't believe so.

Please note that, when I did the original installs:

- /usr/bin/add_metadata existed

- I did have python-biom-format installed

Please note that, as far as I am aware, there have been no adverse
consequences as a result of this warning, but also that I am not
the user of the software on these machines.

Thanks/best

--
Steve Lane


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Bug#742754: qiime: When installing, get: W: pycompile:160: dangling symlink skipped: /usr/lib/qiime/bin/add_metadata.py

2014-03-26 Thread Steve Lane
Package: qiime
Version: 1.8.0+dfsg-2
Severity: normal

Dear Maintainer,

When I installed qiime, I got the following:

W: pycompile:160: dangling symlink skipped: /usr/lib/qiime/bin/add_metadata.py 
(../../../bin/add_biom_metadata)

Note that /usr/bin/add_metadata does exist, and I did have
python-biom-format installed (see below).

Note that I am currently on 1.8, but this error appeared when doing a
clean install of qiime 1.7.

Thanks/best,

--
Steve Lane


-- System Information:
Debian Release: 7.4
  APT prefers stable
  APT policy: (990, 'stable'), (900, 'testing'), (800, 'unstable')
Architecture: amd64 (x86_64)

Kernel: Linux 3.2.0-4-amd64 (SMP w/16 CPU cores)
Locale: LANG=en_US.UTF-8, LC_CTYPE=en_US.UTF-8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/bash

Versions of packages qiime depends on:
ii  king2.21.120420-2
ii  libc6   2.18-4
ii  libffi6 3.0.13-12
ii  libgmp102:5.0.5+dfsg-2
ii  pynast  1.2-1
ii  python  2.7.5-5
ii  python-biom-format  1.1.2-1
ii  python-cogent   1.5.3-2
ii  python-qcli 0.1.0-1

Versions of packages qiime recommends:
pn  ampliconnoise  none
ii  blast2 1:2.2.26.20120620-2
pn  cd-hit none
pn  chimeraslayer  none
pn  fasttree   none
pn  infernal   none
ii  libjs-jquery   1.7.2+dfsg-1
ii  muscle 1:3.8.31-1
ii  python-matplotlib  1.3.1-1+b1
pn  python-mpi4py  none
ii  python-numpy   1:1.8.1~rc1-2

Versions of packages qiime suggests:
pn  cytoscape   none
pn  rdp-classifier  none
pn  t-coffeenone
pn  torque-client   none

-- no debconf information


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Bug#655466: libapache2-mod-wsgi: python2.6 depend

2013-07-11 Thread Steve Lane
Package: libapache2-mod-wsgi
Version: 3.3-4
Followup-For: Bug #655466

Dear Maintainer,

Is anything happening with this?  The package depends on *both*
libpython2.6 *and* libpython2.7, which seems broken.

I would *really* like to uninstall python2.6 from my system.

Thanks much,

--
Steve Lane
System Administrator, Scientific Computing
Joint BioEnergy Institute
Lawrence Berkeley National Laboratory


-- System Information:
Debian Release: 7.1
  APT prefers stable
  APT policy: (990, 'stable'), (900, 'testing'), (800, 'unstable')
Architecture: amd64 (x86_64)

Kernel: Linux 3.2.0-4-amd64 (SMP w/1 CPU core)
Locale: LANG=en_US.UTF-8, LC_CTYPE=en_US.UTF-8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/bash

Versions of packages libapache2-mod-wsgi depends on:
ii  apache22.2.22-13
ii  apache2-mpm-prefork [apache2]  2.2.22-13
ii  apache2.2-common   2.2.22-13
ii  libc6  2.13-38
ii  libpython2.6   2.6.8-1.1
ii  libpython2.7   2.7.3-6
ii  python 2.7.3-4

-- no debconf information


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Bug#711159: upgrade of openssh-server to 1:6.2p2-3 wants to uninstall file-rc in favor of sysv-rc

2013-06-05 Thread Steve Lane
Package: openssh-server
Version: 1:6.2p2-3

openssh-server 1:6.2p2-3 depends on sysv-rc (= 2.88dsf-24), which
apparently means it wants to uninstall file-rc (which is currently at
0.8.16).  It seems like this should be a dependence on sysv-rc or file-rc.

I am using Debian GNU/Linux jessie/sid, kernel 3.2.41-2+deb7u2 x86_64
and libc6:amd64 2.17-3.

Thanks/best,

--
Steve Lane


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Bug#711159: upgrade of openssh-server to 1:6.2p2-3 wants to uninstall file-rc in favor of sysv-rc

2013-06-05 Thread Steve Lane
On Jun 05 09:49, Colin Watson wrote:
 On Tue, Jun 04, 2013 at 10:58:20PM -0700, Steve Lane wrote:
  openssh-server 1:6.2p2-3 depends on sysv-rc (= 2.88dsf-24), which
  apparently means it wants to uninstall file-rc (which is currently at
  0.8.16).  It seems like this should be a dependence on sysv-rc or file-rc.
 
 Yes, see http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=709482.  I'll
 upload a rebuilt version of openssh soonish which will fix this.
 
 -- 
 Colin Watson   [cjwat...@debian.org]

Great - thanks very much.  Somehow I managed to miss this (not exactly
sure how :)

Thank you for your efforts on everyone's behalf.  Please (feel free to)
close out this bug if  when you see fit.

Best,

--
Steve Lane


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Bug#711150: locate: nfs4 should be (and is no longer, again) included in list of excluded filesystems

2013-06-04 Thread Steve Lane
Package: locate
Version: 4.4.2-4
Severity: normal

Dear Maintainer,

Based on looking at bug #300631, and the behavior of 'updatedb' on my
systems, it appears that, at some point between version 4.2.20-1 and
4.4.2-4 (possibly as part of the transition of locate and updatedb from
the 'findutils' package to the 'locate' package), the 'nfs4' exclusion
was lost.

Note that #300631 appears to indicate the possibility that the 'nfs4'
exclusion took effect in /etc/updatedb.conf, which appears to no longer
exist.

Adding the 'nfs4' string to the 'PRUNEFS' variable in
/usr/bin/updatedb.findutils (where 'nfs' and 'NFS' are already present)
solves the problem on my systems.

Thanks/best,

--
Steve Lane


-- System Information:
Debian Release: 7.0
  APT prefers stable
  APT policy: (990, 'stable'), (900, 'testing'), (800, 'unstable')
Architecture: amd64 (x86_64)

Kernel: Linux 3.2.0-4-amd64 (SMP w/1 CPU core)
Locale: LANG=en_US.UTF-8, LC_CTYPE=en_US.UTF-8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/bash

Versions of packages locate depends on:
ii  findutils  4.4.2-4
ii  libc6  2.13-38

locate recommends no packages.

locate suggests no packages.

-- no debconf information


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Bug#711151: locate: 'reportbug locate' generates a list of current bugs for 'findutils (source)'

2013-06-04 Thread Steve Lane
Package: locate
Version: 4.4.2-4
Severity: normal

Dear Maintainer,

In using 'reportbug' to file a bug report against the 'locate' package,
'reportbug' generates a list of current bugs based on 'findutils
(source)'.

I did not specify the package on the command line, just called 'reportbug'
and then input the package name ('locate') when prompted.

I don't know if this is (a) an actual bug (although I can see from
packages.debian.org/locate that there is a separate list of bugs for the
'locate' package), (b) a 'locate' bug or (c) a 'findutils' bug, (or (d)
a 'reportbug' bug, but this last seems unlikely to me), but I'm guessing
filing it this way will (hopefully) be useful.

Thanks/best,

--
Steve Lane


-- System Information:
Debian Release: 7.0
  APT prefers stable
  APT policy: (990, 'stable'), (900, 'testing'), (800, 'unstable')
Architecture: amd64 (x86_64)

Kernel: Linux 3.2.0-4-amd64 (SMP w/1 CPU core)
Locale: LANG=en_US.UTF-8, LC_CTYPE=en_US.UTF-8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/bash

Versions of packages locate depends on:
ii  findutils  4.4.2-4
ii  libc6  2.13-38

locate recommends no packages.

locate suggests no packages.

-- no debconf information


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Bug#698821: linux-image-3.2.0-4-amd64: ARECA driver arcmsr is out of date - please update

2013-01-23 Thread Steve Lane
Package: src:linux
Version: 3.2.35-2
Severity: important
Tags: d-i upstream patch

Dear Maintainer,

Please see https://bugzilla.kernel.org/show_bug.cgi?id=52961

The ARECA arcmsr driver has not (as far as I can tell) been updated
since version 1.20.00.15 02/27/2008; the current version, available from:

http://www.areca.com.tw/support/s_linux/linux.htm

is 1.20.0X.15-111012 2011/10/12.  Current ARECA hardware is unsupported
by the older driver.

Thanks/best,

--
Steve Lane


-- Package-specific info:
** Version:
Linux version 3.2.0-4-amd64 (debian-ker...@lists.debian.org) (gcc version 4.6.3 
(Debian 4.6.3-12) ) #1 SMP Debian 3.2.32-1

-- System Information:
Debian Release: 7.0
  APT prefers testing
  APT policy: (990, 'testing'), (900, 'stable'), (800, 'unstable')
Architecture: amd64 (x86_64)
Kernel: Linux 3.2.0-4-amd64 (SMP w/48 CPU cores)


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Bug#679882: linux: leap second fixes missing in 3.2 and 2.6.32 longterm

2012-09-08 Thread Steve Lane
Awesome - thanks very much!

--
Steve Lane
System Administrator, Scientific Computing
Joint BioEnergy Institute
Lawrence Berkeley National Laboratory


On Sep 08 12:53, dann frazier wrote:
 On Fri, Sep 07, 2012 at 10:35:20AM -0700, Steve Lane wrote:
  Hi Ben,
  
  Is anything happening with this bug e.g. getting the patches into the
  Debian stable kernel package (2.6.32) and a new version pushed out?
  We had another meltdown at the end of August and it would be really
  helpful to have an upgrade before the end of this month (September,
  in 23 days).
  
  Nothing has been added to the bug report since the 5th of last month
  (August); if there is updated information could someone please update
  the bug report?
 
 I've applied John Stultz's backport to my local tree - will commit it
 after some testing.


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Bug#679882: linux: leap second fixes missing in 3.2 and 2.6.32 longterm

2012-09-07 Thread Steve Lane
Hi Ben,

Is anything happening with this bug e.g. getting the patches into the
Debian stable kernel package (2.6.32) and a new version pushed out?
We had another meltdown at the end of August and it would be really
helpful to have an upgrade before the end of this month (September,
in 23 days).

Nothing has been added to the bug report since the 5th of last month
(August); if there is updated information could someone please update
the bug report?

Thanks/best,

--
Steve Lane
System Administrator, Scientific Computing
Joint BioEnergy Institute
Lawrence Berkeley National Laboratory


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Bug#686372: rsyslog: /lib/init/rw/sendsigs.omit.d not actually removed

2012-08-31 Thread Steve Lane
Package: rsyslog
Version: 5.8.11-1+b1
Severity: normal


For dependency reasons I upgraded rsyslog on a Stable box, from
4.6.4-2 to 5.8.11-1+b1.  /lib/init/rw/sendsigs.omit.d was not
removed, and it still contains:

  lrwxrwxrwx 1 root root 21 Aug  2  2011 rsyslog - /var/run/rsyslogd.pid

Functionality seems fine, and /etc/init.d/rsyslog contains:

  OMITDIR=/run/sendsigs.omit.d

which exists and contains (among other things):

  lrwxrwxrwx 1 root root 21 Aug 31 09:26 rsyslog - /var/run/rsyslogd.pid

/var/run/rsyslogd.pid exists and has the correct PID in it.

The Debian changelog indicates that /lib/init/rw/sendsigs.omit.d should
have been removed:

  rsyslog (5.8.2-2) unstable; urgency=low

* Transition to /run/sendsigs.omit.d. (Closes: #633036)
  - Use /run/sendsigs.omit.d/rsyslog in debian/rsyslog.init.
  - Add Depends on initscripts (= 2.88dsf-13.3) to ensure /run is usable.
  - Remove /lib/init/rw/sendsigs.omit.d/rsyslog on upgrades.

   -- Michael Biebl bi...@debian.org  Fri, 08 Jul 2011 01:36:20 +0200

Thanks/best,

--
Steve Lane
System Administrator, Scientific Computing
Joint BioEnergy Institute
Lawrence Berkeley National Laboratory


-- System Information:
Debian Release: 6.0.5
  APT prefers stable
  APT policy: (990, 'stable'), (900, 'testing'), (800, 'unstable')
Architecture: amd64 (x86_64)

Kernel: Linux 2.6.32-5-amd64 (SMP w/48 CPU cores)
Locale: LANG=en_US.UTF-8, LC_CTYPE=en_US.UTF-8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash

Versions of packages rsyslog depends on:
ii  initscripts 2.88dsf-22.1 scripts for initializing and shutt
ii  libc6   2.13-35  Embedded GNU C Library: Shared lib
ii  lsb-base4.1+Debian7  Linux Standard Base 4.1 init scrip
ii  zlib1g  1:1.2.3.4.dfsg-3 compression library - runtime

Versions of packages rsyslog recommends:
ii  logrotate 3.7.8-6Log rotation utility

Versions of packages rsyslog suggests:
pn  rsyslog-doc   none (no description available)
pn  rsyslog-gnutlsnone (no description available)
pn  rsyslog-gssapinone (no description available)
pn  rsyslog-mysql | rsyslog-pgsql none (no description available)
pn  rsyslog-relp  none (no description available)

-- Configuration Files:
/etc/logrotate.d/rsyslog changed:
/var/log/syslog
{
missingok
notifempty
delaycompress
compress
postrotate
invoke-rc.d rsyslog reload  /dev/null
endscript
}
/var/log/mail.info
/var/log/mail.warn
/var/log/mail.err
/var/log/mail.log
/var/log/daemon.log
/var/log/kern.log
/var/log/auth.log
/var/log/user.log
/var/log/lpr.log
/var/log/cron.log
/var/log/debug
/var/log/messages
{
missingok
notifempty
compress
delaycompress
sharedscripts
postrotate
invoke-rc.d rsyslog reload  /dev/null
endscript
}

/etc/rsyslog.conf changed:
$ModLoad imuxsock # provides support for local system logging
$ModLoad imklog   # provides kernel logging support (previously done by rklogd)
$ActionFileDefaultTemplate RSYSLOG_TraditionalFileFormat
$FileOwner root
$FileGroup adm
$FileCreateMode 0640
$DirCreateMode 0755
$Umask 0022
$IncludeConfig /etc/rsyslog.d/*.conf
auth,authpriv.* /var/log/auth.log
*.*;auth,authpriv.none  -/var/log/syslog
daemon.*-/var/log/daemon.log
kern.*  -/var/log/kern.log
lpr.*   -/var/log/lpr.log
mail.*  -/var/log/mail.log
user.*  -/var/log/user.log
mail.info   -/var/log/mail.info
mail.warn   -/var/log/mail.warn
mail.err/var/log/mail.err
news.crit   /var/log/news/news.crit
news.err/var/log/news/news.err
news.notice -/var/log/news/news.notice
*.=debug;\
auth,authpriv.none;\
news.none;mail.none -/var/log/debug
*.=info;*.=notice;*.=warn;\
auth,authpriv.none;\
cron,daemon.none;\
mail,news.none  -/var/log/messages
*.emerg *
daemon.*;mail.*;\
news.err;\
*.=debug;*.=info;\
*.=notice;*.=warn   |/dev/xconsole
*.* @syslog.lbl.gov


-- no debconf information


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Bug#653240: rakudo: 'perl6' command with no arguments results in PARROT VM: Could not load bytecode Could not load oplib `io_ops'

2011-12-25 Thread Steve Lane
Package: rakudo
Version: 0.1~2011.07-1
Severity: normal


It is my understanding from the documentation that simply typing
'perl6' on the command line should put me into interactive mode (based
on http://rakudo.org/how-to-get-rakudo/).

Instead I get the error message:

PARROT VM: Could not load bytecode
Could not load oplib `io_ops'

So... it looks like something is missing.  This was my install (note
that this machine is running stable, not testing, so perhaps that is
part of the problem..?):

  root@linux apt-get install rakudo parrot-devel/testing
  Reading package lists... Done
  Building dependency tree
  Reading state information... Done
  Selected version '3.6.0-1' (Debian:testing [amd64]) for 'parrot-devel'
  The following extra packages will be installed:
libparrot-dev libparrot2.0.0 libparrot3.6.0 parrot parrot-devel 
parrot-minimal
  Suggested packages:
parrot-doc
  The following NEW packages will be installed:
libparrot-dev libparrot2.0.0 libparrot3.6.0 parrot parrot-devel 
parrot-minimal rakudo

all of which went perfectly smoothly.

Thanks/best

--
Steve Lane

-- System Information:
Debian Release: 6.0.3
  APT prefers stable
  APT policy: (990, 'stable'), (900, 'testing'), (800, 'unstable')
Architecture: amd64 (x86_64)

Kernel: Linux 2.6.32-5-amd64 (SMP w/4 CPU cores)
Locale: LANG=en_US.UTF-8, LC_CTYPE=en_US.UTF-8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/bash

Versions of packages rakudo depends on:
ii  libc6 2.11.2-10  Embedded GNU C Library: Shared lib
ii  libparrot3.6.03.6.0-1Parrot shared library
ii  libreadline6  6.1-3  GNU readline and history libraries
ii  parrot-devel  3.6.0-1Parrot development tools

rakudo recommends no packages.

rakudo suggests no packages.

-- no debconf information



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Bug#653240: Fixed: rakudo: 'perl6' command with no arguments results in PARROT VM: Could not load bytecode Could not load oplib `io_ops'

2011-12-25 Thread Steve Lane
Got it working.

Turns out, on a Debian Stable box, I also needed to do this:

root@linux apt-get install parrot/testing parrot-minimal/testing

because the Stable versions were already installed, but (apparently)
weren't new enough.

Maybe change/update the Depends: ?

In any event, I can now do:

root@linux perl6
 say Hello, world!
Hello, world!

Thanks/best,

--
Steve Lane

On Dec 25 12:51, Steve Lane wrote:
 Package: rakudo
 Version: 0.1~2011.07-1
 Severity: normal
 
 
 It is my understanding from the documentation that simply typing
 'perl6' on the command line should put me into interactive mode (based
 on http://rakudo.org/how-to-get-rakudo/).
 
 Instead I get the error message:
 
 PARROT VM: Could not load bytecode
 Could not load oplib `io_ops'
 
 So... it looks like something is missing.  This was my install (note
 that this machine is running stable, not testing, so perhaps that is
 part of the problem..?):
 
   root@linux apt-get install rakudo parrot-devel/testing
   Reading package lists... Done
   Building dependency tree
   Reading state information... Done
   Selected version '3.6.0-1' (Debian:testing [amd64]) for 'parrot-devel'
   The following extra packages will be installed:
 libparrot-dev libparrot2.0.0 libparrot3.6.0 parrot parrot-devel 
 parrot-minimal
   Suggested packages:
 parrot-doc
   The following NEW packages will be installed:
 libparrot-dev libparrot2.0.0 libparrot3.6.0 parrot parrot-devel 
 parrot-minimal rakudo
 
 all of which went perfectly smoothly.
 
 Thanks/best
 
 --
 Steve Lane
 
 -- System Information:
 Debian Release: 6.0.3
   APT prefers stable
   APT policy: (990, 'stable'), (900, 'testing'), (800, 'unstable')
 Architecture: amd64 (x86_64)
 
 Kernel: Linux 2.6.32-5-amd64 (SMP w/4 CPU cores)
 Locale: LANG=en_US.UTF-8, LC_CTYPE=en_US.UTF-8 (charmap=UTF-8)
 Shell: /bin/sh linked to /bin/bash
 
 Versions of packages rakudo depends on:
 ii  libc6 2.11.2-10  Embedded GNU C Library: Shared 
 lib
 ii  libparrot3.6.03.6.0-1Parrot shared library
 ii  libreadline6  6.1-3  GNU readline and history 
 libraries
 ii  parrot-devel  3.6.0-1Parrot development tools
 
 rakudo recommends no packages.
 
 rakudo suggests no packages.
 
 -- no debconf information

--
Steve Lane
System Administrator, Scientific Computing
Joint BioEnergy Institute
Lawrence Berkeley National Laboratory





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Bug#597814: tomcat6: dpkg error reported in postint script

2010-09-24 Thread Steve Lane
I had the same problem - as suggested, backslash escaping the forward
slashes in the pathname solved it.

Thanks!

(Seems like it's still a bug, though.)

--
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System Administrator, Scientific Computing
Joint BioEnergy Institute
Lawrence Berkeley National Laboratory





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Bug#597814: tomcat6: dpkg error reported in postint script

2010-09-24 Thread Steve Lane
Update:  while it is the case that backslash-escaping the forward
slashes in JAVA_OPTS in /etc/default/tomcat6 did allow the tomcat6
package to configure successfully, it now means that the backslashes
are in the pathname in the command line, as reported by 'ps', like so
(the problem is at HeapDumpPath):

# ps -fwwwu tomcat6
UIDPID  PPID  C STIME TTY  TIME CMD
tomcat6  19698 1 11 02:48 ?00:00:47 
/usr/lib/jvm/java-6-sun/bin/java 
-Djava.util.logging.config.file=/var/lib/tomcat6/conf/logging.properties 
-Djava.awt.headless=true -Xmx512m -XX:MaxPermSize=256m -XX:+UseParNewGC 
-XX:+CMSClassUnloadingEnabled -XX:+CMSPermGenSweepingEnabled 
-XX:+TraceClassLoading -XX:+TraceClassUnloading 
-XX:HeapDumpPath=\/var\/log\/tomcat6\/java_pid_4.hprof 
-XX:+HeapDumpOnOutOfMemoryError -Djava.net.preferIPv4Stack=true 
-Djava.util.logging.manager=org.apache.juli.ClassLoaderLogManager 
-Djava.endorsed.dirs=/usr/share/tomcat6/endorsed -classpath 
/usr/share/tomcat6/bin/bootstrap.jar -Dcatalina.base=/var/lib/tomcat6 
-Dcatalina.home=/usr/share/tomcat6 -Djava.io.tmpdir=/tmp/tomcat6-tmp 
org.apache.catalina.startup.Bootstrap start

It is not clear to me that this will work as desired/expected...

So: still a bug for sure.

--
Steve Lane
System Administrator, Scientific Computing
Joint BioEnergy Institute
Lawrence Berkeley National Laboratory





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Bug#597814: tomcat6: dpkg error reported in postint script

2010-09-24 Thread Steve Lane
# debconf-show tomcat6
* tomcat6/javaopts: -Djava.awt.headless=true -Xmx128m -Xmx512m 
-XX:MaxPermSize=256m -XX:+UseParNewGC -XX:+CMSClassUnloadingEnabled 
-XX:+CMSPermGenSweepingEnabled -XX:+TraceClassLoading -XX:+TraceClassUnloading 
-XX:HeapDumpPath=\/var\/log\/tomcat6\/java_pid_4.hprof 
-XX:+HeapDumpOnOutOfMemoryError
* tomcat6/groupname: tomcat6
* tomcat6/username: tomcat6

Here's what /etc/default/tomcat6 looks like:

JAVA_OPTS=-Djava.awt.headless=true -Xmx512m -XX:MaxPermSize=256m 
-XX:+UseParNewGC -XX:+CMSClassUnloadingEnabled -XX:+CMSPermGenSweepingEnabled 
-XX:+TraceClassLoading -XX:+TraceClassUnloading 
-XX:HeapDumpPath=\/var\/log\/tomcat6\/java_pid_4.hprof 
-XX:+HeapDumpOnOutOfMemoryError

(This is the only place in /etc/default/tomcat6 where JAVA_OPTS is
uncommented/set, so I'm not sure why the '-Xmx128m' is still being
included..?)

Thanks,

--
Steve Lane
System Administrator, Scientific Computing
Joint BioEnergy Institute
Lawrence Berkeley National Laboratory





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Bug#454665: closed by maximilian attems m...@stro.at (Re: initramfs-tools: busybox depends should include busybox-static)

2010-03-23 Thread Steve Lane
Maximilian:

I'm fairly disappointed to see that this bug is being closed without
implementing the *extremely* simple change I've propsed (I've updated the
Depends: lines):

  the *only* change is to the Depends line in the control file, from:

  Depends: klibc-utils (= 1.5.9-1), busybox (= 1:1.01-3) | busybox-initramfs, 
cpio, module-init-tools, udev (= 0.086-1), findutils (= 4.2.24)

  to:

  Depends: klibc-utils (= 1.5.9-1), busybox (= 1:1.01-3) | busybox-static (= 
1:1.01-3), cpio, module-init-tools, udev (= 0.086-1), findutils (= 4.2.24)

  (Note that the busybox-initramfs package is not available.)

To respond to your statement about unclear gain: as I originally tried
to point out, having the busybox utilities available when linkages to
dynamic libraries are broken is *super* useful.  As far as I am aware
there is no downside to making the above change, since users can still
install busybox if they so choose.

I'm also disappointed that this simple change has not been made after
two years.  Frankly, I'm completely at a loss to understand why no one
has just gone ahead and done this - maybe you could enlighten me..?

As one of the maintainers of the package, is there some reason you
couldn't just go ahead and make the change?

Thanks very much,

--
Steve Lane
System Administrator, Scientific Computing
Joint BioEnergy Institute
Lawrence Berkeley National Laboratory



On Wed, Mar 24, 2010 at 03:39:07AM +, Debian Bug Tracking System wrote:
 This is an automatic notification regarding your Bug report
 which was filed against the initramfs-tools package:
 
 #454665: initramfs-tools: busybox depends should include busybox-static
 
 It has been closed by maximilian attems m...@stro.at.
 
 Their explanation is attached below along with your original report.
 If this explanation is unsatisfactory and you have not received a
 better one in a separate message then please contact maximilian attems 
 m...@stro.at by
 replying to this email.
 
 
 -- 
 454665: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=454665
 Debian Bug Tracking System
 Contact ow...@bugs.debian.org with problems

 From: maximilian attems m...@stro.at
 To: 454665-d...@bugs.debian.org
 Subject: Re: initramfs-tools: busybox depends should include busybox-static
 Date: Wed, 24 Mar 2010 04:36:36 +0100
 X-Spam-Level: 
 
 no progress, no activity and unclear gain, thus closing.
 

 From: Steve Lane drst...@rna.berkeley.edu
 To: Debian Bug Tracking System sub...@bugs.debian.org
 Subject: initramfs-tools: busybox depends should include busybox-static
 Date: Thu, 06 Dec 2007 14:26:42 -0800
 X-Spam-Level: 
 
 Package: initramfs-tools
 Version: 0.90a
 Severity: critical
 Justification: breaks the whole system
 
 Attempting to install busybox-static when initramfs-tools is installed
 results in an uninstall of initramfs-tools, and, consequently, the
 Debian kernel package.
 
 Obviously busybox-static (vs. busybox) is not normally needed, but,
 again obviously, it is precisely when things (i.e. dynamic libraries)
 are broken that it *is* needed (I've been there - it's not pretty).  It is
 these (potential) circumstances that justify the severity of this bug.
 
 Fortunately, it is super easy to fix.  I've installed my own copy of
 initramfs-tools on a test machine, where the *only* change is to the
 Depends line in the control file, from:
 
 Depends: klibc-utils (= 1.4.34-1), busybox (= 1:1.01-3) | 
 busybox-initramfs, cpio, module-init-tools, udev (= 0.086-1)
 
 to:
 
 Depends: klibc-utils (= 1.4.34-1), busybox (= 1:1.01-3) | busybox-static 
 (= 1:1.01-3), cpio, module-init-tools, udev (= 0.086-1)
 
 (Note that the busybox-initramfs package is not available.)
 
 I don't know if this qualifies as a patch or not, but there it is.
 It works great - I was able to install busybox-static (which removes
 busybox) with no problem.
 
 Note that this issue relates to a bug filed against busybox-static
 (#375568), but it appears to be more properly filed against
 initramfs-tools (especialy since #375568 was filed nearly a year and a
 half ago and, as with all the busybox and busybox-static bugs, nothing
 seems to be happening with them).
 
 Hopefully this can happen ASAP, since it's very easy, and only makes
 good things happen!
 
 Thanks very much,
 
 --
 Steve Lane
 System, Network and Security Administrator
 Doudna Lab
 Biomolecular Structure and Mechanism Group
 UC Berkeley
 
 
 -- Package-specific info:
 -- /proc/cmdline
 root=/dev/hda4 ro 
 
 -- /proc/filesystems
   cramfs
   ext3
 
 -- lsmod
 Module  Size  Used by
 nfsd  203568  13 
 exportfs6240  1 nfsd
 button  8688  0 
 ac  5956  0 
 battery10756  0 
 ipv6  240804  50 
 nfs   225228  8 
 lockd  61224  3 nfsd,nfs
 nfs_acl 4288  2 nfsd,nfs
 sunrpc158588  11 nfsd,nfs,lockd,nfs_acl
 ipt_MASQUERADE  4384  1

Bug#454665: closed by maximilian attems m...@stro.at (Re: initramfs-tools: busybox depends should include busybox-static)

2010-03-23 Thread Steve Lane
Maximilian:

On Wed, Mar 24, 2010 at 05:10:40AM +0100, Maximilian Attems wrote:
 Dear Steve,
 
 keeping that story short. I'm in the middle of a big initramfs-tools
 backlog, the last message to that bug was 
 Date: Wed, 9 Apr 2008 12:36:48 +0200
 
 and was unresponded see:
 http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=454665#32

Sorry I didn't get back to you - I'm not sure I ever saw that message...

 your email also doesn't enlightem me if busybox-static usage
 in initramfs does still spam the user with log messages of the type:
 Using fallback suid method

I don't know myself.  (I'm not actually using those particular systems
anymore, so I don't have a test system to check at the moment...)

I had actually forgotten about the Using fallback suid method spam
problem, and I will certainly agree that the messages are *really*
annoying...

Depends: klibc-utils (= 1.5.9-1), busybox (= 1:1.01-3) | busybox-static 
  (= 1:1.01-3), cpio, module-init-tools, udev (= 0.086-1), findutils (= 
  4.2.24)
  
(Note that the busybox-initramfs package is not available.)
 
 it is available in ubuntu, what about aboves conern?

Hmmm... if it's available in Ubuntu, is there some reason it's not
available in Debian?

  I'm also disappointed that this simple change has not been made after
  two years.  Frankly, I'm completely at a loss to understand why no one
  has just gone ahead and done this - maybe you could enlighten me..?
  
  As one of the maintainers of the package, is there some reason you
  couldn't just go ahead and make the change?
 
 how comes that the change that seems so important to you is not
 worth a followup? 

I'm sorry about that - I'm pretty sure if I'd seen the message I would
have replied (I don't generally check the weblogs for bug reports).

 or a proper fix in busybox if it is still the case?
 (it might or might not be)

Yeah - I don't know either.  This is still something I would like to see,
and I guess I was hoping the busybox maintainer(s) would be on board.

I will see if I can follow up with them.

Again - sorry about the miscommunication.  I guess I just got busy with
other things...

Anyway - thanks for your help/info.

--
Steve Lane
System Administrator, Scientific Computing
Joint BioEnergy Institute
Lawrence Berkeley National Laboratory





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Bug#561770: nagios-plugins-standard: Should not have the qstat package as a dependency

2009-12-19 Thread Steve Lane
Package: nagios-plugins-standard
Version: 1.4.12-5
Severity: normal


The 'qstat' package has not received an update in at least three (3)
years.  It appears that it is no longer being maintained.

Admins running Nagios on production servers may not (probably don't)
want 'qstat' installed.

This issue was addressed several years ago for Gentoo:
http://bugs.gentoo.org/16628

Please change the 'qstat' package to Recommends or Suggests, rather
than Depends.

Thanks,

--
Steve Lane
System Administrator, Scientific Computing
Joint BioEnergy Institute
Lawrence Berkeley National Laboratory

-- System Information:
Debian Release: 5.0.3
  APT prefers stable
  APT policy: (990, 'stable'), (900, 'testing'), (800, 'unstable')
Architecture: amd64 (x86_64)

Kernel: Linux 2.6.26-2-amd64 (SMP w/4 CPU cores)
Locale: LANG=en_US.UTF-8, LC_CTYPE=en_US.UTF-8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/bash

Versions of packages nagios-plugins-standard depends on:
ii  bind9-host [host]  1:9.5.1.dfsg.P3-1 Version of 'host' bundled with BIN
ii  dnsutils   1:9.5.1.dfsg.P3-1 Clients provided with BIND
ii  fping  2.4b2-to-ipv6-15  sends ICMP ECHO_REQUEST packets to
ii  libc6  2.7-18GNU C Library: Shared libraries
ii  libldap-2.4-2  2.4.11-1+lenny1   OpenLDAP libraries
ii  libmysqlclient15off5.0.51a-24+lenny2 MySQL database client library
ii  libnet-snmp-perl   5.2.0-1   Script SNMP connections
ii  libpq5 8.3.8-0lenny1 PostgreSQL C client library
ii  libradiusclient-ng20.5.5-1   Enhanced RADIUS client library
ii  nagios-plugins-basic   1.4.12-5  Plugins for the nagios network mon
ii  qstat  2.11-1Command-line tool for querying qua
ii  radiusclient1  0.3.2-11.1/bin/login replacement which uses 
ii  smbclient  2:3.2.5-4lenny7   a LanManager-like simple client fo
ii  snmp   5.4.1~dfsg-12 SNMP (Simple Network Management Pr
ii  ucf3.0016Update Configuration File: preserv

nagios-plugins-standard recommends no packages.

Versions of packages nagios-plugins-standard suggests:
ii  nagios3   3.0.6-4~lenny2 A host/service/network monitoring 
ii  whois 4.7.30 an intelligent whois client

-- no debconf information



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Bug#496455: kdesktop: user cannot unlock screen with correct password

2008-08-24 Thread Steve Lane
Package: kdesktop
Version: 4:3.5.9.dfsg.1-5
Severity: critical
Justification: breaks unrelated software


After a recent upgrade (since 23 Aug 2008), our users, who can login
fine, cannot unlock the terminal after kdesktop_lock has locked it.
This appears to (possibly) be a PAM-related issue - here is what is
reported in auth.log when a user tries to unlock the terminal:

Aug 24 13:22:23 aspen unix_chkpwd[3472]: check pass; user unknown
Aug 24 13:22:23 aspen unix_chkpwd[3472]: password check failed for user 
(iamsteve)
Aug 24 13:22:23 aspen kcheckpass[3471]: pam_unix(kscreensaver:auth): 
authentication failure; logname=iamsteve uid=1000 euid=1000 tty=:0 ruser= 
rhost=  user=iamsteve
Aug 24 13:22:23 aspen kcheckpass[3471]: Authentication failure for iamsteve 
(invoked by uid 1000)

(the username 'iamsteve' and the user ID '1000' have been altered.)

I am thus cross-filing this bug with kdesktop (for kdesktop_lock),
kdebase-bin (for kcheckpass) and libpam-modules (for unix_chkpwd).
Please excuse the multiple postings, and please feel free to re-assign
this bug as appropriate.

As the user was able to log in prior to locking the screen, it doesn't
appear to be a problem related to the user per-se (i.e. the user exists
and is able to authenticate under some circumstances).

Note that I am not the only person with this problem:

  http://linux.derkeiler.com/Mailing-Lists/Debian/2008-08/msg01086.html

reports the same behavior in an unstable system (ours are testing)
as of 14 Aug 2008.

As with the above report, rebooting does not solve the problem.

Please be aware that we are *not* using LDAP or NIS/NIS+, and that I am
in no way affiliated with 'eric2 dot valette at orange-ftgroup dot
com' - this is not a simple re-reporting of bugs #478274 and/or #487932.

In addition to the information below, we are using:

ii  libpam-doc  1.0.1-3 Documentation of PAM
ii  libpam-modules  1.0.1-3 Pluggable Authentication Modules for PAM
ii  libpam-runtime  1.0.1-3 Runtime support for the PAM library
ii  libpam0g1.0.1-3 Pluggable Authentication Modules library

Thank you for your attention to this matter.

--
Steve Lane
System, Network and Security Administrator
Doudna Lab
Biomolecular Structure and Mechanism Group
UC Berkeley


-- System Information:
Debian Release: lenny/sid
  APT prefers testing
  APT policy: (990, 'testing'), (900, 'stable'), (800, 'unstable')
Architecture: i386 (i686)

Kernel: Linux 2.6.25-2-686 (SMP w/1 CPU core)
Locale: LANG=C, LC_CTYPE=C (charmap=ANSI_X3.4-1968)
Shell: /bin/sh linked to /bin/bash

Versions of packages kdesktop depends on:
ii  kdebase-bin 4:3.5.9.dfsg.1-5 core binaries for the KDE base mod
ii  kdeeject4:3.5.9.dfsg.1-5 script used by KDE to eject remova
ii  kdelibs4c2a 4:3.5.9.dfsg.1-6 core libraries and binaries for al
ii  libc6   2.7-13   GNU C Library: Shared libraries
ii  libgcc1 1:4.3.1-2GCC support library
ii  libgl1-mesa-glx [libgl1 7.0.3-5  A free implementation of the OpenG
ii  libglu1-mesa [libglu1]  7.0.3-5  The OpenGL utility library (GLU)
ii  libkonq44:3.5.9.dfsg.1-5 core libraries for Konqueror
ii  libqt3-mt   3:3.3.8b-5   Qt GUI Library (Threaded runtime v
ii  libstdc++6  4.3.1-2  The GNU Standard C++ Library v3
ii  libx11-62:1.1.4-2X11 client-side library
ii  libxau6 1:1.0.3-3X11 authorisation library
ii  libxcursor1 1:1.1.9-1X cursor management library
ii  libxext62:1.0.4-1X11 miscellaneous extension librar
ii  libxss1 1:1.1.3-1X11 Screen Saver extension library
ii  libxxf86misc1   1:1.0.1-3X11 XFree86 miscellaneous extensio

kdesktop recommends no packages.

kdesktop suggests no packages.

-- no debconf information



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Bug#496456: kdebase-bin: user cannot unlock screen with correct password

2008-08-24 Thread Steve Lane
Package: kdebase-bin
Version: 4:3.5.9.dfsg.1-5
Severity: critical
Justification: breaks unrelated software


After a recent upgrade (since 23 Aug 2008), our users, who can login
fine, cannot unlock the terminal after kdesktop_lock has locked it.
This appears to (possibly) be a PAM-related issue - here is what is
reported in auth.log when a user tries to unlock the terminal:

Aug 24 13:22:23 aspen unix_chkpwd[3472]: check pass; user unknown
Aug 24 13:22:23 aspen unix_chkpwd[3472]: password check failed for user 
(iamsteve)
Aug 24 13:22:23 aspen kcheckpass[3471]: pam_unix(kscreensaver:auth): 
authentication failure; logname=iamsteve uid=1000 euid=1000 tty=:0 ruser= 
rhost=  user=iamsteve
Aug 24 13:22:23 aspen kcheckpass[3471]: Authentication failure for iamsteve 
(invoked by uid 1000)

(the username 'iamsteve' and the user ID '1000' have been altered.)

I am thus cross-filing this bug with kdesktop (for kdesktop_lock),
kdebase-bin (for kcheckpass) and libpam-modules (for unix_chkpwd).
Please excuse the multiple postings, and please feel free to re-assign
this bug as appropriate.

As the user was able to log in prior to locking the screen, it doesn't
appear to be a problem related to the user per-se (i.e. the user exists
and is able to authenticate under some circumstances).

Note that I am not the only person with this problem:

  http://linux.derkeiler.com/Mailing-Lists/Debian/2008-08/msg01086.html

reports the same behavior in an unstable system (ours are testing)
as of 14 Aug 2008.

As with the above report, rebooting does not solve the problem.

Please be aware that we are *not* using LDAP or NIS/NIS+, and that I am
in no way affiliated with 'eric2 dot valette at orange-ftgroup dot
com' - this is not a simple re-reporting of bugs #478274 and/or #487932.

In addition to the information below, we are using:

ii  libpam-doc  1.0.1-3 Documentation of PAM
ii  libpam-modules  1.0.1-3 Pluggable Authentication Modules for PAM
ii  libpam-runtime  1.0.1-3 Runtime support for the PAM library
ii  libpam0g1.0.1-3 Pluggable Authentication Modules library

Thank you for your attention to this matter.

--
Steve Lane
System, Network and Security Administrator
Doudna Lab
Biomolecular Structure and Mechanism Group
UC Berkeley


-- System Information:
Debian Release: lenny/sid
  APT prefers testing
  APT policy: (990, 'testing'), (900, 'stable'), (800, 'unstable')
Architecture: i386 (i686)

Kernel: Linux 2.6.25-2-686 (SMP w/1 CPU core)
Locale: LANG=C, LC_CTYPE=C (charmap=ANSI_X3.4-1968)
Shell: /bin/sh linked to /bin/bash

Versions of packages kdebase-bin depends on:
ii  kdebase-bin-kde34:3.5.9.dfsg.1-5 core binaries for the KDE base mod
ii  kdelibs4c2a 4:3.5.9.dfsg.1-6 core libraries and binaries for al
ii  libc6   2.7-13   GNU C Library: Shared libraries
ii  libgcc1 1:4.3.1-2GCC support library
ii  libpam-runtime  1.0.1-3  Runtime support for the PAM librar
ii  libpam0g1.0.1-3  Pluggable Authentication Modules l
ii  libqt3-mt   3:3.3.8b-5   Qt GUI Library (Threaded runtime v
ii  libstdc++6  4.3.1-2  The GNU Standard C++ Library v3
ii  libx11-62:1.1.4-2X11 client-side library
ii  libxcursor1 1:1.1.9-1X cursor management library
ii  libxkbfile1 1:1.0.5-1X11 keyboard file manipulation lib
ii  libxtst62:1.0.3-1X11 Testing -- Resource extension 

kdebase-bin recommends no packages.

Versions of packages kdebase-bin suggests:
ii  gdb6.8-3 The GNU Debugger
ii  khelpcente 4:4.0.0.really.3.5.9.dfsg.1-5 help center for KDE

-- no debconf information



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Bug#496457: libpam-modules: user cannot unlock screen with correct password

2008-08-24 Thread Steve Lane
Package: libpam-modules
Version: 1.0.1-3
Severity: critical
Justification: breaks unrelated software


After a recent upgrade (since 23 Aug 2008), our users, who can login
fine, cannot unlock the terminal after kdesktop_lock has locked it.
This appears to (possibly) be a PAM-related issue - here is what is
reported in auth.log when a user tries to unlock the terminal:

Aug 24 13:22:23 aspen unix_chkpwd[3472]: check pass; user unknown
Aug 24 13:22:23 aspen unix_chkpwd[3472]: password check failed for user 
(iamsteve)
Aug 24 13:22:23 aspen kcheckpass[3471]: pam_unix(kscreensaver:auth): 
authentication failure; logname=iamsteve uid=1000 euid=1000 tty=:0 ruser= 
rhost=  user=iamsteve
Aug 24 13:22:23 aspen kcheckpass[3471]: Authentication failure for iamsteve 
(invoked by uid 1000)

(the username 'iamsteve' and the user ID '1000' have been altered.)

I am thus cross-filing this bug with kdesktop (for kdesktop_lock),
kdebase-bin (for kcheckpass) and libpam-modules (for unix_chkpwd).
Please excuse the multiple postings, and please feel free to re-assign
this bug as appropriate.

As the user was able to log in prior to locking the screen, it doesn't
appear to be a problem related to the user per-se (i.e. the user exists
and is able to authenticate under some circumstances).

Note that I am not the only person with this problem:

  http://linux.derkeiler.com/Mailing-Lists/Debian/2008-08/msg01086.html

reports the same behavior in an unstable system (ours are testing)
as of 14 Aug 2008.

As with the above report, rebooting does not solve the problem.

Please be aware that we are *not* using LDAP or NIS/NIS+, and that I am
in no way affiliated with 'eric2 dot valette at orange-ftgroup dot
com' - this is not a simple re-reporting of bugs #478274 and/or #487932.

In addition to the information below, we are using:

ii  kdebase-bin 4:3.5.9.dfsg.1-5 core binaries for the KDE base mod
ii  kdeeject4:3.5.9.dfsg.1-5 script used by KDE to eject remova
ii  kdelibs4c2a 4:3.5.9.dfsg.1-6 core libraries and binaries for al
ii  libc6   2.7-13   GNU C Library: Shared libraries
ii  libgcc1 1:4.3.1-2GCC support library
ii  libgl1-mesa-glx [libgl1 7.0.3-5  A free implementation of the OpenG
ii  libglu1-mesa [libglu1]  7.0.3-5  The OpenGL utility library (GLU)
ii  libkonq44:3.5.9.dfsg.1-5 core libraries for Konqueror
ii  libqt3-mt   3:3.3.8b-5   Qt GUI Library (Threaded runtime v
ii  libstdc++6  4.3.1-2  The GNU Standard C++ Library v3
ii  libx11-62:1.1.4-2X11 client-side library
ii  libxau6 1:1.0.3-3X11 authorisation library
ii  libxcursor1 1:1.1.9-1X cursor management library
ii  libxext62:1.0.4-1X11 miscellaneous extension librar
ii  libxss1 1:1.1.3-1X11 Screen Saver extension library
ii  libxxf86misc1   1:1.0.1-3X11 XFree86 miscellaneous extensio

Thank you for your attention to this matter.

--
Steve Lane
System, Network and Security Administrator
Doudna Lab
Biomolecular Structure and Mechanism Group
UC Berkeley


-- System Information:
Debian Release: lenny/sid
  APT prefers testing
  APT policy: (990, 'testing'), (900, 'stable'), (800, 'unstable')
Architecture: i386 (i686)

Kernel: Linux 2.6.25-2-686 (SMP w/1 CPU core)
Locale: LANG=C, LC_CTYPE=C (charmap=ANSI_X3.4-1968)
Shell: /bin/sh linked to /bin/bash

Versions of packages libpam-modules depends on:
ii  libc6 2.7-13 GNU C Library: Shared libraries
ii  libdb4.6  4.6.21-8   Berkeley v4.6 Database Libraries [
ii  libpam0g  1.0.1-3Pluggable Authentication Modules l
ii  libselinux1   2.0.65-2   SELinux shared libraries

libpam-modules recommends no packages.

libpam-modules suggests no packages.

-- no debconf information



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Bug#496457: libpam-modules: user cannot unlock screen with correct password

2008-08-24 Thread Steve Lane
On Sun, Aug 24, 2008 at 02:41:37PM -0700, Steve Langasek wrote:
 severity 496457 normal
 tags 496457 unreproducible moreinfo
 thanks
 
 On Sun, Aug 24, 2008 at 02:13:53PM -0700, Steve Lane wrote:
  Justification: breaks unrelated software
 
 False.  Software that invokes PAM is not unrelated.

Sorry, I guess I wasn't clear.  The software that breaks is the entire
machine, since once the screen is locked the (non-admin) user has no
recourse except to (A) find an admin to kill kdesktop_lock, or (B)
powercycle the machine.

  Aug 24 13:22:23 aspen unix_chkpwd[3472]: check pass; user unknown
  Aug 24 13:22:23 aspen unix_chkpwd[3472]: password check failed for user 
  (iamsteve)
 
 Please report the permissions from /etc/shadow and /sbin/unix_chkpwd.  I
 suspect you have wrong perms on /etc/shadow.

[EMAIL PROTECTED] ls -l /etc/shadow /sbin/unix_chkpwd
16 -r 1 root root   14020 Aug 24 14:53 /etc/shadow
28 -rwxr-sr-x 1 root shadow 26372 Aug 20 12:24 /sbin/unix_chkpwd*

Note that we have 13 workstations with this identical config, all but
two of which have been patched in the last two days.  All of the ones
which have been patched are broken in this way; the two that have not
been patched are not.  I am thus wondering if something changed with
the last libpam patch..?

Please be aware that this bug has been cross-posted to bugs #496455 and
#496456 as well as this one (#496457).

Thanks much,

--
Steve Lane
System, Network and Security Administrator
Doudna Lab
Biomolecular Structure and Mechanism Group
UC Berkeley




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Bug#496457: libpam-modules: user cannot unlock screen with correct password

2008-08-24 Thread Steve Lane
The machines that have *not* been patched look like this:

-r 1 root root 14050 Aug 24 15:13 /etc/shadow
-rwsr-xr-x 1 root root 19632 Jul 22 17:35 /sbin/unix_chkpwd

The ones that have look like this:

-r 1 root root 14050 Aug 24 15:13 /etc/shadow
-rwxr-sr-x 1 root shadow 26372 Aug 20 12:24 /sbin/unix_chkpwd

and I see that, as of pam 1.0.1-1:

  * The password-changing helper functionality for SELinux systems has been
split out into a separate unix_update binary, so at long last we can
change unix_chkpwd to be sgid shadow instead of suid root.
Closes: #155583.

So, I'm guessing that we need:

-r--r- 1 root shadow 14050 Aug 24 15:13 /etc/shadow

?

Thanks,

--
Steve Lane
System, Network and Security Administrator
Doudna Lab
Biomolecular Structure and Mechanism Group
UC Berkeley


On Sun, Aug 24, 2008 at 03:04:28PM -0700, Steve Lane wrote:
 On Sun, Aug 24, 2008 at 02:41:37PM -0700, Steve Langasek wrote:
  severity 496457 normal
  tags 496457 unreproducible moreinfo
  thanks
  
  On Sun, Aug 24, 2008 at 02:13:53PM -0700, Steve Lane wrote:
   Justification: breaks unrelated software
  
  False.  Software that invokes PAM is not unrelated.
 
 Sorry, I guess I wasn't clear.  The software that breaks is the entire
 machine, since once the screen is locked the (non-admin) user has no
 recourse except to (A) find an admin to kill kdesktop_lock, or (B)
 powercycle the machine.
 
   Aug 24 13:22:23 aspen unix_chkpwd[3472]: check pass; user unknown
   Aug 24 13:22:23 aspen unix_chkpwd[3472]: password check failed for user 
   (iamsteve)
  
  Please report the permissions from /etc/shadow and /sbin/unix_chkpwd.  I
  suspect you have wrong perms on /etc/shadow.
 
 [EMAIL PROTECTED] ls -l /etc/shadow /sbin/unix_chkpwd
 16 -r 1 root root   14020 Aug 24 14:53 /etc/shadow
 28 -rwxr-sr-x 1 root shadow 26372 Aug 20 12:24 /sbin/unix_chkpwd*
 
 Note that we have 13 workstations with this identical config, all but
 two of which have been patched in the last two days.  All of the ones
 which have been patched are broken in this way; the two that have not
 been patched are not.  I am thus wondering if something changed with
 the last libpam patch..?
 
 Please be aware that this bug has been cross-posted to bugs #496455 and
 #496456 as well as this one (#496457).
 
 Thanks much,
 
 --
 Steve Lane
 System, Network and Security Administrator
 Doudna Lab
 Biomolecular Structure and Mechanism Group
 UC Berkeley




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Bug#496455: Acknowledgement (kdesktop: user cannot unlock screen with correct password)

2008-08-24 Thread Steve Lane
Problem solved - please see Bug#496457.

Please close.

Thank you,

--
Steve Lane
System, Network and Security Administrator
Doudna Lab
Biomolecular Structure and Mechanism Group
UC Berkeley




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Bug#496456: Acknowledgement (kdebase-bin: user cannot unlock screen with correct password)

2008-08-24 Thread Steve Lane
Problem solved - please see Bug#496457.

Please close.

Thank you,

--
Steve Lane
System, Network and Security Administrator
Doudna Lab
Biomolecular Structure and Mechanism Group
UC Berkeley




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Bug#490751: #490751: linux-image-2.6.25-2-686: proprietary NVIDIA module will not install; #481485: nVidia driver fails to compile due to active Xen support

2008-07-22 Thread Steve Lane
On Tue, Jul 22, 2008 at 10:38:20PM +0200, maximilian attems wrote:
 On Tue, Jul 22, 2008 at 11:09:36AM -0700, Steve Lane wrote:
  Oops - my bad.  Found the right package:
  
  nvidia-kernel-legacy-96xx-source 
  
  to build the drivers I needed.
  
  Thanks for your help.
 
 next time please don't forget to cc bug report.
 this is *not* personal communication and could be easily
 be lost in spam or whatever..
 
 thanks
 
 -- 
 maks

No worries - I just figured I wouldn't pollute the bug reports any
further, but... either way.

Thanks,

--
Steve Lane
System, Network and Security Administrator
Doudna Lab
Biomolecular Structure and Mechanism Group
UC Berkeley




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Bug#481485: #490751: linux-image-2.6.25-2-686: proprietary NVIDIA module will not install; #481485: nVidia driver fails to compile due to active Xen support

2008-07-21 Thread Steve Lane
It would be great if the XEN options:

CONFIG_XEN=y
CONFIG_XEN_BLKDEV_FRONTEND=m
CONFIG_XEN_NETDEV_FRONTEND=m
CONFIG_HVC_XEN=y

were turned off in the Debian stock kernel until there is adequate
support for installing the Debian NVIDIA packages (nvidia-kernel-source,
nvidia-kernel-common and nvidia-glx) under testing, given that this is
now the default testing kernel.

Note that instructions similar to the following (available at
http://blog.creonfx.com/linux/how-to-install-nvidia-driver-on-2625-2-debian-kernel-with-xen
and elsewhere):

1. cd /lib/modules/2.6.25-2-686 (or wherever are your modules)
2. grep CONFIG_XEN . -Rl | xargs -i sed -i -e 's/CONFIG_XEN/CONFIG_LUPO/g' {}
3. export IGNORE_XEN_PRESENCE=1
4. sh NVIDIA-Linux-x86-173.08-pkg1.run (or you can use patched 169.12 - 
http://www.nvnews.net/vbulletin/showthread.php?t=110088 )

do not always work (they didn't for me, nor for several other people
who have reported this problem in various places).

Also note:

The following advice (from bug report 481485):

|- If you use the nvidia installer you are on your own.  You also cause
|- package files to be overwritten and will likely have breakage on
|- upgrades in the future.  Have fun.
|- 
|- If you use the debian packages then we can help.  We already fixed the
|- xen problem in the debian packages by patching the driver build system.

is completely unhelpful (and unappreciated) since, as noted above (and in the 
Debian wiki: 
http://wiki.debian.org/NvidiaGraphicsDrivers#head-816174f32ba98061bdd68615838ee453646721f1),
the Debian packages won't install in testing.

Thanks for your efforts on our behalf,

--
Steve Lane
System, Network and Security Administrator
Doudna Lab
Biomolecular Structure and Mechanism Group
UC Berkeley




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Bug#426238: Bug # 426238: ntp: kernel time sync error 0001

2008-02-10 Thread Steve Lane
In response to Bill Wohler's comment on 28 Aug 2007:

since 2.6.18 in lenny is now obsolete, this bug can probably be closed

please be aware that, as of today (2008-02-10), anyone using the most
recent nvidia-kernel package (nvidia-kernel-2.6.18-6-686) is using
linux-image-2.6.18-6-686, and that, therefore, 2.6.18 in lenny is *not*
now obsolete, and that, therefore, this bug is still a problem and
should not be closed.

I am hoping that an nvidia-kernel-2.6.22 package will be available
soon, but I have not yet heard back from inquiries into this.

In the mean time, any report of progress in addressing this bug would
be much appreciated.

--
Steve Lane
System, Network and Security Administrator
Doudna Lab
Biomolecular Structure and Mechanism Group
UC Berkeley




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Bug#433204: Add task I/O accounting linux-image-2.6.22-2-686: Request thirded

2007-12-18 Thread Steve Lane
Ditto - please add these config parameters to the Debian linux-image-2.6
builds to allow task I/O accounting:

CONFIG_TASKSTATS=y
CONFIG_TASK_DELAY_ACCT=y
CONFIG_TASK_XACCT=y
CONFIG_TASK_IO_ACCOUNTING=y

Also: This bug was first filed in mid-July, and was seconded at the
beginning of November.  So far there has been no response from the
maintainers.  Further, the status is currently wishlist, but it should
be at least minor, since it does render other software nonfunctional
(i.e. atop, iotop).

Please provide a status update on this bug.

Thanks much for your efforts,

--
Steve Lane
System, Network and Security Administrator
Doudna Lab
Biomolecular Structure and Mechanism Group
UC Berkeley




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Bug#334672: busybox-static: Using fallback suid method

2007-12-18 Thread Steve Lane
(Re-sent to include in bug report.)

Greetings.  If 'busybox-static' is installed (instead of 'busybox'),
and the system has a kernel from a Debian 'linux-image...' package,
then when the initrd image for the 'linux-image...' package is built
(using by the scripts in the 'initramfs-tools' package), 'busybox-static'
is included in the image, and booting using this image generates *many*
of these 'Using fallback suid method' messages.  Thus, the maintainer
of the 'initramfs-tools' package understandably does not want to use
'busybox-static' as an option (either via Depends: or Recommends:)
when installing the 'initramfs-tools' package.

Can you please provide me a time-frame for when this bug might be
addressed?  I see that it is now 2 years and 59 days old.

Note also that this issue relates to bug #375568: busybox-static should
include Provides: busybox.

Thanks,

--
Steve Lane
System, Network and Security Administrator
Doudna Lab
Biomolecular Structure and Mechanism Group
UC Berkeley




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Bug#454665: initramfs-tools: busybox depends should include busybox-static

2007-12-14 Thread Steve Lane
Maximilian et al:

I see that several things have happend regarding this bug, most notably
that busybox has moved from 'Depends' to 'Recommends' (and that the bug
itself has moved from 'critical' to 'wishlist').  I am not sure of all
of the consequences of this, although it appears from the changelog that
most of the functionality required is present via binaries from klibc,
possibly excepting tools needed for md/lvm root configs (i.e. the control
file states, klibc provides utilities to setup root. Having the root
on EVMS, MD, LVM2, LUKS or NFS is also supported., but it is not clear
that this is still true if *some* version of busybox is not installed.)
Is this correct: Will md/lvm root configs function (at all) when busybox
is not present?

I also see why 'busybox-initramfs' is available as an alternative (for
Ubuntu boxes).  Is there some reason not to also have 'busybox-static'
available as an alternative, especially since this is now just
'Recommends'?

Thanks,

--
Steve Lane
System, Network and Security Administrator
Doudna Lab
Biomolecular Structure and Mechanism Group
UC Berkeley




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Bug#453002: findutils/locate split

2007-12-14 Thread Steve Lane
It seems like it would also be useful to add a 'Recommends: locate' line
to the findutils control file, or possibly even a mention of the split,
and the 'locate' package in the findutils control file 'Description:',
since NEWS.Debian is unavailable if the findutils package isn't installed.

--
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System, Network and Security Administrator
Doudna Lab
Biomolecular Structure and Mechanism Group
UC Berkeley




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Bug#454665: initramfs-tools: busybox depends should include busybox-static

2007-12-11 Thread Steve Lane
On Sun, Dec 09, 2007 at 11:51:11PM +0100, maximilian attems wrote:
 On Thu, 06 Dec 2007, Steve Lane wrote:
 
  Attempting to install busybox-static when initramfs-tools is installed
  results in an uninstall of initramfs-tools, and, consequently, the
  Debian kernel package.
 
 it's been a time ago,
 but last i checked busybox static didn't work as expected by
 mkinitramfs. 
 
 did you check that your newly gernerated initramfs boots?
  
 -- 
 maks

The machine had/has two kernels installed on it:

  linux-image-2.6.22-2-686-bigmem 2.6.22-4:
  linux-image-2.6.22-3-686-bigmem 2.6.22-6

For both kernels, after reinstalling the kernel and thus building a new
initramfs, the only difference I can see in booting is that about 50-70
copies of the following message are generated during the early part of
the boot process:

  Using fallback suid method

Other than that, the machine *seems* to boot and function fine (so
far...).

--
Steve Lane
System, Network and Security Administrator
Doudna Lab
Biomolecular Structure and Mechanism Group
UC Berkeley



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Bug#454665: initramfs-tools: busybox depends should include busybox-static

2007-12-06 Thread Steve Lane
Package: initramfs-tools
Version: 0.90a
Severity: critical
Justification: breaks the whole system

Attempting to install busybox-static when initramfs-tools is installed
results in an uninstall of initramfs-tools, and, consequently, the
Debian kernel package.

Obviously busybox-static (vs. busybox) is not normally needed, but,
again obviously, it is precisely when things (i.e. dynamic libraries)
are broken that it *is* needed (I've been there - it's not pretty).  It is
these (potential) circumstances that justify the severity of this bug.

Fortunately, it is super easy to fix.  I've installed my own copy of
initramfs-tools on a test machine, where the *only* change is to the
Depends line in the control file, from:

Depends: klibc-utils (= 1.4.34-1), busybox (= 1:1.01-3) | busybox-initramfs, 
cpio, module-init-tools, udev (= 0.086-1)

to:

Depends: klibc-utils (= 1.4.34-1), busybox (= 1:1.01-3) | busybox-static (= 
1:1.01-3), cpio, module-init-tools, udev (= 0.086-1)

(Note that the busybox-initramfs package is not available.)

I don't know if this qualifies as a patch or not, but there it is.
It works great - I was able to install busybox-static (which removes
busybox) with no problem.

Note that this issue relates to a bug filed against busybox-static
(#375568), but it appears to be more properly filed against
initramfs-tools (especialy since #375568 was filed nearly a year and a
half ago and, as with all the busybox and busybox-static bugs, nothing
seems to be happening with them).

Hopefully this can happen ASAP, since it's very easy, and only makes
good things happen!

Thanks very much,

--
Steve Lane
System, Network and Security Administrator
Doudna Lab
Biomolecular Structure and Mechanism Group
UC Berkeley


-- Package-specific info:
-- /proc/cmdline
root=/dev/hda4 ro 

-- /proc/filesystems
cramfs
ext3

-- lsmod
Module  Size  Used by
nfsd  203568  13 
exportfs6240  1 nfsd
button  8688  0 
ac  5956  0 
battery10756  0 
ipv6  240804  50 
nfs   225228  8 
lockd  61224  3 nfsd,nfs
nfs_acl 4288  2 nfsd,nfs
sunrpc158588  11 nfsd,nfs,lockd,nfs_acl
ipt_MASQUERADE  4384  1 
iptable_nat 7972  1 
nf_nat 18732  2 ipt_MASQUERADE,iptable_nat
nf_conntrack_ipv4  18540  2 iptable_nat
nf_conntrack   61192  4 
ipt_MASQUERADE,iptable_nat,nf_nat,nf_conntrack_ipv4
nfnetlink   6520  3 nf_nat,nf_conntrack_ipv4,nf_conntrack
ip_tables  13124  1 iptable_nat
x_tables   15140  3 ipt_MASQUERADE,iptable_nat,ip_tables
dm_snapshot17284  0 
dm_mirror  21696  0 
dm_mod 52928  2 dm_snapshot,dm_mirror
w83781d27500  0 
hwmon_vid   3712  1 w83781d
psmouse36784  0 
e7xxx_edac  6624  0 
serio_raw   7460  0 
i2c_i8019456  0 
i2c_core   24320  2 w83781d,i2c_i801
shpchp 31892  0 
pci_hotplug29952  1 shpchp
edac_mc24080  1 e7xxx_edac
iTCO_wdt   10788  0 
evdev  10080  0 
pcspkr  3872  0 
rtc13624  0 
ext3  121960  3 
jbd56104  1 ext3
mbcache 9028  1 ext3
ide_cd 37184  0 
cdrom  33600  1 ide_cd
ide_disk   17280  6 
ata_generic 8324  0 
libata116720  1 ata_generic
scsi_mod  137388  1 libata
piix9636  0 [permanent]
e1000 114560  0 
floppy 55684  0 
generic 5604  0 [permanent]
ide_core  114788  4 ide_cd,ide_disk,piix,generic
uhci_hcd   23824  0 
usbcore   126152  2 uhci_hcd
thermal14184  0 
processor  32072  1 thermal
fan 5604  0 

-- /etc/kernel-img.conf
# Kernel image management overrides
# See kernel-img.conf(5) for details
do_symlinks = yes
relative_links = yes
do_bootloader = no
do_bootfloppy = no
do_initrd = yes
link_in_boot = no
postinst_hook = update-grub
postrm_hook   = update-grub

-- /etc/initramfs-tools/initramfs.conf
MODULES=most
BUSYBOX=y
KEYMAP=n
BOOT=local
DEVICE=eth0
NFSROOT=auto


-- System Information:
Debian Release: lenny/sid
  APT prefers testing
  APT policy: (990, 'testing'), (900, 'stable'), (800, 'unstable')
Architecture: i386 (i686)

Kernel: Linux 2.6.22-2-686-bigmem (SMP w/4 CPU cores)
Locale: LANG=C, LC_CTYPE=C (charmap=ANSI_X3.4-1968)
Shell: /bin/sh linked to /bin/bash

Versions of packages initramfs-tools depends on:
ii  busybox  1:1.1.3-5   Tiny utilities for small and embed
ii  cpio 2.9-6   GNU cpio -- a program to manage ar
ii  klibc-utils  1.5-4

Bug#396928: allow setting of From: address in /etc/default/cron

2007-12-06 Thread Steve Lane
Package: cron
Version: 3.0pl1-100
Followup-For: Bug #396928

I am wondering about the status of this bug.

The original request, by the original submitter, Darren Dittrich, was
that cron acquire default options from /etc/default/cron, in the standard
Debian way.  My suggestion was that one of these options be the From:
address cron uses to send messages.  Setting this is useful regardless
of which MTA one is using (i.e. this is *not* specifically a problem
with ssmtp, or any other MTA).

You stated that this will be added in the next release, which
I am running (and have been for nearly a year), but there is no
/etc/default/cron.

Being able to control cron's From: address would be *hugely* useful
in our environment; doubtless this is true for at least one other person
(Michelle Konzack, who also added to this bug).  In addition, there are
obviously other things that would be good to be able to configure for
cron in /etc/default/cron.

Again, *independent* of anything *any* MTA does, configuring cron's
From: line is useful.  /etc/default/cron is the obvious mechanism for
doing this.

Please provide a status update.

Thanks very much for your efforts,

--
Steve Lane
System, Network and Security Administrator
Doudna Lab
Biomolecular Structure and Mechanism Group
UC Berkeley


-- System Information:
Debian Release: lenny/sid
  APT prefers testing
  APT policy: (990, 'testing'), (900, 'stable'), (800, 'unstable')
Architecture: i386 (i686)

Kernel: Linux 2.6.22-2-686-bigmem (SMP w/4 CPU cores)
Locale: LANG=C, LC_CTYPE=C (charmap=ANSI_X3.4-1968)
Shell: /bin/sh linked to /bin/bash

Versions of packages cron depends on:
ii  adduser  3.105   add and remove users and groups
ii  debianutils  2.25.1  Miscellaneous utilities specific t
ii  libc62.6.1-1+b1  GNU C Library: Shared libraries
ii  libpam0g 0.99.7.1-5  Pluggable Authentication Modules l
ii  libselinux1  2.0.15-2+b1 SELinux shared libraries
ii  lsb-base 3.1-24  Linux Standard Base 3.1 init scrip

Versions of packages cron recommends:
ii  ssmtp [mail-transport-agent]  2.61-12.1  extremely simple MTA to get mail o

-- no debconf information



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Bug#441520: netatalk: heimdal-dev vs. libcupsys2-dev-libkrb5-dev dependency conflict prevents building

2007-10-22 Thread Steve Lane
Package: netatalk
Version: 2.0.3-6
Followup-For: Bug #441520


Version 1.3.0-2 of cupsys (libcupsys2-dev) introduced a dependency on
libkrb5-dev, which conflicts with heimdal-dev.  Thus, since netatalk
depends on libcupsys2-dev and heimdal-dev, it won't build.

Please either remove the heimdal-dev dependency and replace it with
one on libkrb5-dev, or communicate with the cupsys maintainers so that
they can remove the libkrb5-dev dependency, possibly replacing it with
a dependency on heimdal-dev.

Thanks,

--
Steve Lane
System, Network and Security Administrator
Doudna Lab
Biomolecular Structure and Mechanism Group
UC Berkeley


-- System Information:
Debian Release: lenny/sid
  APT prefers testing
  APT policy: (990, 'testing'), (900, 'stable'), (800, 'unstable')
Architecture: i386 (i686)

Kernel: Linux 2.6.22-2-686-bigmem (SMP w/4 CPU cores)
Locale: LANG=C, LC_CTYPE=C (charmap=ANSI_X3.4-1968)
Shell: /bin/sh linked to /bin/bash

Versions of packages netatalk depends on:
ii  libc6   2.6.1-1+b1   GNU C Library: Shared libraries
ii  libcupsys2  1.3.2-1  Common UNIX Printing System(tm) - libs
ii  libdb4.24.2.52+dfsg-4Berkeley v4.2 Database Libraries 
[runtime]
ii  libgssapi4-heimdal  0.7.2.dfsg.1-10  Libraries for Heimdal Kerberos
ii  libkrb5-17-heimdal  0.7.2.dfsg.1-10  Libraries for Heimdal Kerberos
ii  libpam-modules  0.99.7.1-5   Pluggable Authentication Modules for 
PAM
ii  libpam-runtime  0.99.7.1-5   Runtime support for the PAM library
ii  libpam0g0.99.7.1-5   Pluggable Authentication Modules 
library
ii  libslp1 1.2.1-6.2OpenSLP libraries
ii  libwrap07.6.dbs-14   Wietse Venema's TCP wrappers library
ii  netbase 4.30 Basic TCP/IP networking system
ii  perl5.8.8-7  Larry Wall's Practical Extraction and 
Report Language

Versions of packages netatalk recommends:
pn  db4.2-util none(no description available)
ii  lsof   4.78.dfsg.1-3 List open files
pn  rc none(no description available)
pn  slpd   none(no description available)



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Bug#421659: cpio: mt does not report tape status and hangs if the drive is empty

2007-04-30 Thread Steve Lane
Package: cpio
Version: 2.7-1
Severity: grave
Justification: renders package unusable


Using the cpio 2.6-17 stable version of mt, I can do the following:

  With a tape in the drive:

root /bin/mt -f /dev/nst0 status
drive type = Generic SCSI-2 tape
drive status = 1241513984
sense key error = 0
residue count = 0
file number = 0
block number = 0
Tape block size 0 bytes. Density code 0x4a (unknown).
Soft error count since last status=0
General status bits on (4101):
 BOT ONLINE IM_REP_EN
root

  With no tape in the drive:

root /bin/mt -f /dev/nst0 status
/bin/mt: /dev/nst0: No medium found
root


Using the cpio 2.7-1 testing version of mt, I get this:

  With a tape in the drive:

root /bin/mt -f /dev/nst0 status
drive type = 114
drive status = 1241513984
sense key error = 0
residue count = 0
file number = 0
block number = 0
root

  (i.e. much of the actually useful information I need isn't there.)

  With no tape in the drive:

root /bin/mt -f /dev/nst0 status

  the command just hangs - I have to give it an interrupt (^C) to get
  the prompt back.


In addition, using the 2.7-1 mt has resulted in the drive requesting
the cleaning tape after most uses (60+%).  This behavior did not occur
prior to upgrading to 2.7-1, and has gone away now that I've downgraded
to 2.6-17.

I don't want to upgrade to 2.7-2 because (a) I have no reason to assume
this will solve these problems, and (b) 2.7-2 wants me to upgrade libc6,
which I'm not willing to do for this one package.

Please advise.

Thanks,

--
Steve Lane
System, Network and Security Administrator
Doudna Lab
Biomolecular Structure and Mechanism Group
UC Berkeley

-- System Information:
Debian Release: lenny/sid
  APT prefers testing
  APT policy: (990, 'testing'), (900, 'stable'), (800, 'unstable')
Architecture: i386 (i686)

Kernel: Linux 2.6.15-phabrix060 (SMP w/4 CPU cores)
Locale: LANG=C, LC_CTYPE=C (charmap=ANSI_X3.4-1968)
Shell: /bin/sh linked to /bin/bash

Versions of packages cpio depends on:
ii  libc6   2.3.6.ds1-13 GNU C Library: Shared libraries

cpio recommends no packages.

-- no debconf information


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Bug#365234: libtasn1-2: Please patch to fix CVE-2006-0645 security issue

2006-04-28 Thread Steve Lane
Package: libtasn1-2
Version: 1:0.2.17-2
Severity: grave
Tags: security
Justification: user security hole


Greetings.  I'm filing this bug report to keep track of the following
security issue.

[DSA 985-1] New libtasn1-2 packages fix arbitrary code execution
was released on 6 Mar 2006, in regard to Bugtraq ID 16568 / CVE-2006-0645.

It states, in part: For the unstable distribution (sid) these problems
will be fixed soon.  For the record, the current unstable version,
0.2.17-2, is also the curent testing version.

Soon has expired ;)  Please patch/repair (there is a patch available for
the stable version, 0.2.10-3sarge1 - I don't know if this helps or not).

Thanks much, 

--
Steve Lane
System, Network and Security Administrator
Doudna Lab
Biomolecular Structure and Mechanism Group
UC Berkeley

-- System Information:
Debian Release: testing/unstable
  APT prefers testing
  APT policy: (990, 'testing'), (900, 'stable'), (800, 'unstable')
Architecture: i386 (i686)
Shell:  /bin/sh linked to /bin/bash
Kernel: Linux 2.6.15-phabrix060
Locale: LANG=C, LC_CTYPE=C (charmap=ANSI_X3.4-1968)

Versions of packages libtasn1-2 depends on:
ii  libc6 2.3.6-7GNU C Library: Shared libraries

Versions of packages libtasn1-2 recommends:
ii  libtasn1-2-bin1:0.2.17-2 Manage ASN.1 structures (binaries)

-- no debconf information


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Bug#357289: tetex-bin: Configuration fails - package won't install

2006-03-16 Thread Steve Lane
Package: tetex-bin
Version: 3.0-14
Severity: grave
Justification: renders package unusable


Here's what I get:

   root apt-get install tetex-bin
   Reading package lists... Done
   Building dependency tree... Done
   The following extra packages will be installed:
 tetex-base
   Suggested packages:
 tetex-extra gs-gpl gs-esp gs-afpl gv postscript-viewer xpdf-reader
   pdf-viewer texi2html dvipng chktex lacheck
 rubber sam2p
   Recommended packages:
 tetex-doc dialog perl-tk
   The following NEW packages will be installed:
 tetex-base tetex-bin
   0 upgraded, 2 newly installed, 0 to remove and 65 not upgraded.
   Need to get 26.0MB of archives.
   After unpacking 86.4MB of additional disk space will be used.
   Do you want to continue [Y/n]?
   Get:1 http://linux.csua.berkeley.edu testing/main tetex-base 3.0-15
   [22.4MB]
   Get:2 http://linux.csua.berkeley.edu testing/main tetex-bin 3.0-14
   [3555kB]
   Fetched 26.0MB in 3s (8396kB/s)
   Preconfiguring packages ...
   Selecting previously deselected package tetex-base.
   (Reading database ... 67751 files and directories currently installed.)
   Unpacking tetex-base (from .../tetex-base_3.0-15_all.deb) ...
   Selecting previously deselected package tetex-bin.
   Unpacking tetex-bin (from .../tetex-bin_3.0-14_i386.deb) ...
   Setting up tetex-base (3.0-15) ...
   done
   
   Creating config file /etc/texdoctk/texdocrc with new version
   
   Setting up tetex-bin (3.0-14) ...
   
   Creating config file /etc/texmf/fmt.d/01tetex.cnf with new version
   Running fmtutil-sys. This may take some time. ...
   fmtutil: config file `fmtutil.cnf' not found.
   
   fmtutil failed. Output has been stored in
   /tmp/tetex.postinst.XXPsNQXI
   Please include this file if you report a bug.
   dpkg: error processing tetex-bin (--configure):
subprocess post-installation script returned error exit status 1
   Errors were encountered while processing:
tetex-bin
   E: Sub-process /usr/bin/dpkg returned an error code (1)

It appears (maybe) that there is a problem with one of the install scripts
(postinst?) that either fails to put fmtutil.cnf in the right place,
or installs it and then deletes it, or..?

Note that:

   /tmp/tetex.postinst.XXPsNQXI

is a file of zero size.

Thanks for any help you might be able to render,

--
Steve Lane

-- System Information:
Debian Release: testing/unstable
  APT prefers testing
  APT policy: (990, 'testing'), (900, 'stable'), (800, 'unstable')
Architecture: i386 (i686)
Shell:  /bin/sh linked to /bin/bash
Kernel: Linux 2.6.11-phabrix040
Locale: LANG=C, LC_CTYPE=C (charmap=ANSI_X3.4-1968)

Versions of packages tetex-bin depends on:
ii  debconf [debconf-2.0] 1.4.71 Debian configuration management sy
ii  debianutils   2.15.2 Miscellaneous utilities specific t
ii  dpkg  1.13.16package maintenance system for Deb
ii  ed0.2-20 The classic unix line editor
ii  libc6 2.3.5-13   GNU C Library: Shared libraries an
ii  libcairo2 1.0.2-3The Cairo 2D vector graphics libra
ii  libfontconfig12.3.2-1.1  generic font configuration library
ii  libfreetype6  2.1.10-1   FreeType 2 font engine, shared lib
hi  libgcc1   1:4.0.2-5  GCC support library
ii  libice6   6.9.0.dfsg.1-4 Inter-Client Exchange library
ii  libjpeg62 6b-11  The Independent JPEG Group's JPEG 
ii  libkpathsea4  3.0-14 path search library for teTeX (run
ii  libpaper1 1.1.14-5   Library for handling paper charact
ii  libpng12-01.2.8rel-5 PNG library - runtime
ii  libpoppler0c2 0.4.5-3PDF rendering library
ii  libsm66.9.0.dfsg.1-4 X Window System Session Management
hi  libstdc++64.0.2-5The GNU Standard C++ Library v3
ii  libt1-5   5.1.0-2Type 1 font rasterizer library - r
ii  libx11-6  6.9.0.dfsg.1-4 X Window System protocol client li
ii  libxaw8   6.9.0.dfsg.1-4 X Athena widget set library
ii  libxext6  6.9.0.dfsg.1-4 X Window System miscellaneous exte
ii  libxmu6   6.9.0.dfsg.1-4 X Window System miscellaneous util
ii  libxp66.9.0.dfsg.1-4 X Window System printing extension
ii  libxpm4   6.9.0.dfsg.1-4 X pixmap library
ii  libxrender1   1:0.9.0.2-1X Rendering Extension client libra
ii  libxt66.9.0.dfsg.1-4 X Toolkit Intrinsics
ii  mime-support  3.35-1 MIME files 'mime.types'  'mailcap
ii  perl  5.8.8-2Larry Wall's Practical Extraction 
ii  sed   4.1.2-8The GNU sed stream editor
ii  tetex-base3.0-15 Basic library files of teTeX
ii  ucf

Bug#357289: tetex-bin: Configuration fails - package won't install

2006-03-16 Thread Steve Lane
drsteve dpkg -l tex-common
Desired=Unknown/Install/Remove/Purge/Hold
| Status=Not/Installed/Config-files/Unpacked/Failed-config/Half-installed
|/ Err?=(none)/Hold/Reinst-required/X=both-problems (Status,Err: uppercase=bad)
||/ Name Version  Description
+++---
ii  tex-common   0.15 Common 
infrastructure for using and building TeX in Debian

drsteve ls -l /var/lib/texmf/web2c/fmtutil.cnf
0 lrwxrwxrwx  1 root root 22 Apr 19  2005 /var/lib/texmf/web2c/fmtutil.cnf - 
/etc/texmf/fmtutil.cnf

drsteve grep ^WEB2C /etc/texmf/texmf.cnf
WEB2C = $TEXMF/web2c

drsteve grep ^WEB2C /etc/texmf/texmf.d/15Plain.cnf
WEB2C = $TEXMF/web2c

drsteve grep '^TEXMF ' /etc/texmf/texmf.cnf
TEXMF = 
{$TEXMFCONFIG,$TEXMFVAR,$TEXMFHOME,$TEXMFSYSCONFIG,!!$TEXMFSYSVAR,!!$TEXMFLOCAL,!!$TEXMFMAIN,!!$TEXMFDIST}

drsteve grep '^TEXMF ' /etc/texmf/texmf.d/05TeXMF.cnf
TEXMF = 
{$TEXMFCONFIG,$TEXMFVAR,$TEXMFHOME,$TEXMFSYSCONFIG,!!$TEXMFSYSVAR,!!$TEXMFLOCAL,!!$TEXMFMAIN,!!$TEXMFDIST}

And, as an added bonus:

drsteve ls -l /etc/texmf
total 52
 4 drwxr-xr-x  2 root root  4096 Mar 16 07:46 fmt.d/
 4 -rw-r--r--  1 root root  3872 Feb 11 08:14 fmtutil.cnf.postinst-bak
 4 drwxr-xr-x  2 root root  4096 Mar 16 07:43 language.d/
24 -rw-r--r--  1 root root 24296 Feb 11 08:14 texmf.cnf
 4 drwxr-xr-x  2 root root  4096 May  4  2005 texmf.d/
 8 -rw-r--r--  1 root root  4598 Feb 11 08:14 updmap.cfg.postinst-bak
 4 drwxr-xr-x  2 root root  4096 Mar 16 07:43 updmap.d/

and:

root ls -l /etc/texmf/texmf.d/
total 44
8 -rw-r--r--  1 root root 6709 Feb 11 08:14 05TeXMF.cnf
4 -rw-r--r--  1 root root 1080 Apr 19  2005 15Plain.cnf
4 -rw-r--r--  1 root root 3410 Feb 11 08:14 45TeXinputs.cnf
4 -rw-r--r--  1 root root 1240 Feb 11 08:14 55Fonts.cnf
4 -rw-r--r--  1 root root  163 Feb 11 08:14 65BibTeX.cnf
4 -rw-r--r--  1 root root  689 Feb 11 08:14 75DviPS.cnf
4 -rw-r--r--  1 root root 2684 Feb 11 08:14 85Misc.cnf
4 -rw-r--r--  1 root root  333 Apr 19  2005 90TeXDoc.cnf
8 -rw-r--r--  1 root root 6485 Feb 11 08:14 95NonPath.cnf

Thanks for the quick initial response!

--
Steve Lane
System, Network and Security Administrator
Doudna Lab
Biomolecular Structure and Mechanism Group
UC Berkeley

On Thu, Mar 16, 2006 at 05:47:03PM +0100, Frank K?ster wrote:
 Steve Lane [EMAIL PROTECTED] wrote:
 
 Setting up tetex-bin (3.0-14) ...
 
 Creating config file /etc/texmf/fmt.d/01tetex.cnf with new version
 Running fmtutil-sys. This may take some time. ...
 fmtutil: config file `fmtutil.cnf' not found.
 
 What's the output of
 
 dpkg -l tex-common
 ls -l /var/lib/texmf/web2c/fmtutil.cnf 
 grep ^WEB2C /etc/texmf/texmf.cnf
 grep ^WEB2C /etc/texmf/texmf.d/15Plain.cnf
 grep '^TEXMF ' /etc/texmf/texmf.cnf
 grep '^TEXMF ' /etc/texmf/texmf.d/05TeXMF.cnf
 
 Regards, Frank
 -- 
 Frank K?ster
 Single Molecule Spectroscopy, Protein Folding @ Inst. f. Biochemie, Univ. 
 Z?rich
 Debian Developer (teTeX)



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Bug#357289: tetex-bin: Configuration fails - package won't install

2006-03-16 Thread Steve Lane
I did as you suggested:

root ls -l /var/lib/texmf/web2c/fmtutil.cnf
0 lrwxrwxrwx  1 root root 22 Apr 19  2005 /var/lib/texmf/web2c/fmtutil.cnf - 
/etc/texmf/fmtutil.cnf

root rm /var/lib/texmf/web2c/fmtutil.cnf

root ls -l /var/lib/texmf/web2c/fmtutil.cnf
ls: /var/lib/texmf/web2c/fmtutil.cnf: No such file or directory


Now I get this:


root apt-get install tetex-bin
Reading package lists... Done
Building dependency tree... Done
The following extra packages will be installed:
  tetex-base
Suggested packages:
  tetex-extra gs-gpl gs-esp gs-afpl gv postscript-viewer xpdf-reader pdf-viewer 
texi2html dvipng chktex lacheck rubber sam2p
Recommended packages:
  tetex-doc dialog perl-tk
The following NEW packages will be installed:
  tetex-base tetex-bin
0 upgraded, 2 newly installed, 0 to remove and 18 not upgraded.
Need to get 0B/26.0MB of archives.
After unpacking 86.4MB of additional disk space will be used.
Do you want to continue [Y/n]?
Preconfiguring packages ...
Selecting previously deselected package tetex-base.
(Reading database ... 67635 files and directories currently installed.)
Unpacking tetex-base (from .../tetex-base_3.0-15_all.deb) ...
Selecting previously deselected package tetex-bin.
Unpacking tetex-bin (from .../tetex-bin_3.0-14_i386.deb) ...
Setting up tetex-base (3.0-15) ...
done

Creating config file /etc/texdoctk/texdocrc with new version

Setting up tetex-bin (3.0-14) ...

Creating config file /etc/texmf/fmt.d/01tetex.cnf with new version
Running fmtutil-sys. This may take some time. ...
Running updmap-sys. This may take some time. ...
updmap failed. Output has been stored in
/tmp/tetex.updmap.XXjv8Wcy
Please include this file if you report a bug.
dpkg: error processing tetex-bin (--configure):
 subprocess post-installation script returned error exit status 1
Errors were encountered while processing:
 tetex-bin
E: Sub-process /usr/bin/dpkg returned an error code (1)

root ls -l /tmp/tetex.updmap.XXjv8Wcy
4 -rw---  1 root root 46 Mar 16 09:58 /tmp/tetex.updmap.XXjv8Wcy

root cat !$
cat /tmp/tetex.updmap.XXjv8Wcy
updmap-sys: config file updmap.cfg not found.

--
Steve Lane
System, Network and Security Administrator
Doudna Lab
Biomolecular Structure and Mechanism Group
UC Berkeley


On Thu, Mar 16, 2006 at 06:41:58PM +0100, Frank K?ster wrote:
 Steve Lane [EMAIL PROTECTED] wrote:
 
  drsteve dpkg -l tex-common
  Desired=Unknown/Install/Remove/Purge/Hold
  | Status=Not/Installed/Config-files/Unpacked/Failed-config/Half-installed
  |/ Err?=(none)/Hold/Reinst-required/X=both-problems (Status,Err: 
  uppercase=bad)
  ||/ Name Version  Description
  +++---
  ii  tex-common   0.15 Common 
  infrastructure for using and building TeX in Debian
 
  drsteve ls -l /var/lib/texmf/web2c/fmtutil.cnf
  0 lrwxrwxrwx  1 root root 22 Apr 19  2005 /var/lib/texmf/web2c/fmtutil.cnf 
  - /etc/texmf/fmtutil.cnf
 
 Ah.  This file shouldn't be a symlink, but a real file.  Hm, did we ever
 have that setup, maybe during sarge development?  Anyway, when
 update-fmtutil tries to generate that file, it should either
 
 - write to the destination of the link, or
 
 - simply replace the symlink by a real file, or
 
 - stop with an error, 
 
 instead of doing nothing as it currently does.
 
 I think I'm going to change it so that it gives an error (it'd be
 surprising if local customization in /etc/texmf/fmtutil.cnf suddenly
 stopped working).
 
 So to fix your bug, simply remove the symlink.  In case that you have
 some local customization in /etc/texmf/fmtutil.cnf:  The real conffile
 is /etc/texmf/fmt.d/01tetex.cnf, please make your changes there, or
 better, if you only have *additions*, create a new file with extension
 *.cnf in /etc/texmf/fmt.d/ and place your additions there.
 
 By the way, this is explained in README.Debian (in text and html
 format). 
 
 
 Regards, Frank
 
 -- 
 Frank K?ster
 Single Molecule Spectroscopy, Protein Folding @ Inst. f. Biochemie, Univ. 
 Z?rich
 Debian Developer (teTeX)



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Bug#357289: tetex-bin: Configuration fails - package won't install

2006-03-16 Thread Steve Lane
Bingo:

root ls -l /var/lib/texmf/web2c/updmap.cfg
0 lrwxrwxrwx  1 root root 21 Apr 19  2005 /var/lib/texmf/web2c/updmap.cfg - 
/etc/texmf/updmap.cfg

root rm /var/lib/texmf/web2c/updmap.cfg

root ls -l /var/lib/texmf/web2c/updmap.cfg
ls: /var/lib/texmf/web2c/updmap.cfg: No such file or directory

And, finally:

root apt-get install tetex-bin
Reading package lists... Done
Building dependency tree... Done
The following extra packages will be installed:
  tetex-base
Suggested packages:
  tetex-extra gs-gpl gs-esp gs-afpl gv postscript-viewer xpdf-reader pdf-viewer 
texi2html dvipng chktex lacheck rubber sam2p
Recommended packages:
  tetex-doc dialog perl-tk
The following NEW packages will be installed:
  tetex-base tetex-bin
0 upgraded, 2 newly installed, 0 to remove and 18 not upgraded.
Need to get 0B/26.0MB of archives.
After unpacking 86.4MB of additional disk space will be used.
Do you want to continue [Y/n]?
Preconfiguring packages ...
Selecting previously deselected package tetex-base.
(Reading database ... 67635 files and directories currently installed.)
Unpacking tetex-base (from .../tetex-base_3.0-15_all.deb) ...
Selecting previously deselected package tetex-bin.
Unpacking tetex-bin (from .../tetex-bin_3.0-14_i386.deb) ...
Setting up tetex-base (3.0-15) ...
done

Creating config file /etc/texdoctk/texdocrc with new version

Setting up tetex-bin (3.0-14) ...

Creating config file /etc/texmf/fmt.d/01tetex.cnf with new version
Running fmtutil-sys. This may take some time. ...
Running updmap-sys. This may take some time. ... done.

root

Thanks *VERY* much for your help!

--
Steve Lane
System, Network and Security Administrator
Doudna Lab
Biomolecular Structure and Mechanism Group
UC Berkeley


On Thu, Mar 16, 2006 at 07:32:47PM +0100, Frank K?ster wrote:
 Steve Lane [EMAIL PROTECTED] wrote:
 
  root cat !$
  cat /tmp/tetex.updmap.XXjv8Wcy
  updmap-sys: config file updmap.cfg not found.
 
 Might be the same problem:  updmap.cfg should be a normal file in
 /var/lib/texmf/web2c, is it a symlink on your system?
 
 The same advice holds as for fmtutil.cnf:  Please change things in the
 files in /etc/texmf/updmap.d/, add things by adding files *.cfg in that
 directory. 
 
 Regards, Frank
 -- 
 Frank K?ster
 Single Molecule Spectroscopy, Protein Folding @ Inst. f. Biochemie, Univ. 
 Z?rich
 Debian Developer (teTeX)
 



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Bug#327580: boot failure: Superblock last write time is in the future

2006-01-09 Thread Steve Lane
Greetings.  I am (well: was) using the current version of e2fsprogs
(1.38+1.39-WIP-2005.12.10-1), and every-other boot gives the above error
message for the root partition, followed by stopping the boot process and
offering the opportunity to get into maintenance mode to run fsck by hand.
The root partition is marked dirty.

Whether or not I run fsck by hand, or just Ctrl-D to continue, the next
boot runs fsck on the root partition, finds nothing wrong, marks it clean,
and boots normally.  The next reboot brings up the error again.

As someone pointed out
(http://lists.debian.org/debian-user/2006/01/msg00408.html), and as I
observed in the Debian changelogs for this version on the machine(s)
in question, it seems like the fix for this bug is intended to adress
this very problem, but it does not seem to do so on my machines.

Rolling back to e2fsprogs/e2fslibs 1.37-2sarge1 makes the problem go away.
(I had 1.38-2 in the interval, but I can't find a copy of this version
at the moment, so I don't know if it solves the problem.)

Note: My hardware and software clocks are both correct, and both set to
local time.  I have: /etc/localtime - /usr/share/zoneinfo/US/Pacific
(which works fine), and /etc/defaults/rcS has UTC=no.

Please let me know if you need further information.

Thanks,

--
Steve Lane
System, Network and Security Administrator
Doudna Lab
Biomolecular Structure and Mechanism Group
UC Berkeley



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Bug#343569: spamassassin: Can't locate Mail/SPF/Query.pm

2005-12-16 Thread Steve Lane
Package: spamassassin
Version: 3.1.0a-1
Severity: normal


Every email message spamd sees generates one of these in /var/log/mail.err
(I wrapped the line):

Dec 15 23:34:40 lego spamd[15298]: Can't locate Mail/SPF/Query.pm in @INC (@INC 
contains: \
../lib /usr/share/perl5 /etc/perl /usr/local/lib/perl/5.8.7 
/usr/local/share/perl/5.8.7 \
/usr/lib/perl5 /usr/lib/perl/5.8 /usr/share/perl/5.8 /usr/local/lib/site_perl) 
at \
/usr/share/perl5/Mail/SpamAssassin/Plugin/SPF.pm line 272, GEN54 line 47.

In fact, /usr/share/perl5/Mail/SPF doesn't even exist.  'locate Query.pm'
and 'locate SPF' turn up no obvious culprits on this machine.

The spamassassin package installed fine with apt-get (no errors or
weirdness, etc.), and spamd seems to be *working* fine...

Thanks much,

--
Steve Lane
System, Network and Security Administrator
Doudna Lab
Biomolecular Structure and Mechanism Group
UC Berkeley


-- System Information:
Debian Release: testing/unstable
  APT prefers testing
  APT policy: (990, 'testing'), (900, 'stable'), (800, 'unstable')
Architecture: i386 (i686)
Shell:  /bin/sh linked to /bin/bash
Kernel: Linux 2.6.11phabrix
Locale: LANG=C, LC_CTYPE=C (charmap=ANSI_X3.4-1968)

Versions of packages spamassassin depends on:
ii  libdigest-sha1-perl   2.10-1 NIST SHA-1 message digest algorith
ii  libhtml-parser-perl   3.46-1 A collection of modules that parse
ii  perl  5.8.7-7Larry Wall's Practical Extraction 

Versions of packages spamassassin recommends:
ii  libnet-dns-perl   0.53-2 Perform DNS queries from a Perl sc
ii  perl [libmime-base64-perl]5.8.7-7Larry Wall's Practical Extraction 
ii  spamc 3.1.0a-1   Client for SpamAssassin spam filte

-- no debconf information


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Bug#343569: spamassassin: Can't locate Mail/SPF/Query.pm - needs more packages

2005-12-16 Thread Steve Lane
After I did:

root apt-get install libmail-spf-query-perl libsys-hostname-long-perl 
libnet-cidr-lite-perl

(which seemed to be a good idea, based on info contained in Bug #333721:
Cannot find Sys/Hostname/Long.pm), the problem went away.

Is this a package dependency issue?

--
Steve Lane
System, Network and Security Administrator
Doudna Lab
Biomolecular Structure and Mechanism Group
UC Berkeley



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Bug#342765: psmisc: fuser -a flag is always in operation

2005-12-09 Thread Steve Lane
Package: psmisc
Version: 21.8-1
Severity: normal


If I give fuser the '-a' flag, I get the following (FYI: the leading
'\' gets rid of any aliasing):

root \fuser -a /var/log/apache2/error.log*
/var/log/apache2/error.log:  9890 16736 18027 18033 23587 26697 26698 29639 
29808 30117 31194
/var/log/apache2/error.log.1:
/var/log/apache2/error.log.2.gz:
/var/log/apache2/error.log.3.gz:
/var/log/apache2/error.log.4.gz:
/var/log/apache2/error.log.5.gz:
/var/log/apache2/error.log.6.gz:
/var/log/apache2/error.log.7.gz:

which is the expected behavior.

If I leave off the '-a' flag, I get the exact same thing, which is not
the expected behavior, according to the man page.

I should get:

root \fuser /var/log/apache2/error.log*
/var/log/apache2/error.log:  9890 16736 18027 18033 23587 26697 26698 29639 
29808 30117 31194

no?  Or am I missing something...

Thanks,

--
Steve Lane
System, Network and Security Administrator
Doudna Lab
Biomolecular Structure and Mechanism Group
UC Berkeley


-- System Information:
Debian Release: testing/unstable
  APT prefers testing
  APT policy: (990, 'testing'), (900, 'stable'), (800, 'unstable')
Architecture: i386 (i686)
Shell:  /bin/sh linked to /bin/bash
Kernel: Linux 2.4.26
Locale: LANG=C, LC_CTYPE=C (charmap=ANSI_X3.4-1968)

Versions of packages psmisc depends on:
ii  libc6 2.3.5-8GNU C Library: Shared libraries an
ii  libncurses5   5.5-1  Shared libraries for terminal hand

psmisc recommends no packages.

-- no debconf information


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