Bug#877288: r-base: Rebuilding r-bioc-biocgenerics with new R changes behaviour

2017-11-20 Thread Dirk Eddelbuettel
Hi Graham, On 20 November 2017 at 17:06, Graham Inggs wrote: | Hi Dirk | | On 19/11/2017 18:08, Dirk Eddelbuettel wrote: | > Am I correct in assuming that it addresses this issue for BioConductor? | | I had a look at what I assumed is the first beta [1] for 3.4.3. I see I am actually

Bug#877288: r-base: Rebuilding r-bioc-biocgenerics with new R changes behaviour

2017-11-20 Thread Graham Inggs
Hi Dirk On 19/11/2017 18:08, Dirk Eddelbuettel wrote: Am I correct in assuming that it addresses this issue for BioConductor? I had a look at what I assumed is the first beta [1] for 3.4.3. I see the following in NEWS: "Fix calling of methods on S4 generics that dispatch on ... when the

Bug#877288: r-base: Rebuilding r-bioc-biocgenerics with new R changes behaviour

2017-11-19 Thread Dirk Eddelbuettel
Graham, Charles, R 3.4.3 is scheduled for Nov 30. Am I correct in assuming that it addresses this issue for BioConductor? Thanks, Dirk -- http://dirk.eddelbuettel.com | @eddelbuettel | e...@debian.org

Bug#877288: r-base: Rebuilding r-bioc-biocgenerics with new R changes behaviour

2017-10-04 Thread Graham Inggs
Control: reassign -1 src:r-bioc-s4vectors 0.14.3-1 Control: affects -1 = r-bioc-iranges r-bioc-variantannotation Control: tags -1 + fixed-upstream Control: clone -1 -2 Control: reassign -2 src:r-bioc-iranges 2.10.2-1 On 30 September 2017 at 14:30, Dirk Eddelbuettel wrote: > Out

Bug#877288: r-base: Rebuilding r-bioc-biocgenerics with new R changes behaviour

2017-09-30 Thread Dirk Eddelbuettel
On 30 September 2017 at 09:13, Graham Inggs wrote: | Source: r-base | Version: 3.4.1.20170921-1 Out of date. We have 3.4.2 now. | Affects: r-bioc-biocgenerics r-bioc-iranges r-bioc-variantannotation | User: ubuntu-de...@lists.ubuntu.com | Usertags: origin-ubuntu artful autopkgtest Also wrong

Bug#877288: r-base: Rebuilding r-bioc-biocgenerics with new R changes behaviour

2017-09-30 Thread Graham Inggs
On 30 September 2017 at 09:52, Charles Plessy wrote: > The order of builds may matter (because of subtelties of the S4 system). > Have you tried rebuilding r-bioc-iranges in a system after the rebuilt > r-bioc-biocgenerics package was installed ? I did rebuild r-bioc-iranges

Bug#877288: r-base: Rebuilding r-bioc-biocgenerics with new R changes behaviour

2017-09-30 Thread Charles Plessy
Le Sat, Sep 30, 2017 at 04:52:32PM +0900, Charles Plessy a écrit : > The order of builds may matter (because of subtelties of the S4 system). > Have you tried rebuilding r-bioc-iranges in a system after the rebuilt > r-bioc-biocgenerics package was installed ? Sorry, I did not see that the binNMU

Bug#877288: r-base: Rebuilding r-bioc-biocgenerics with new R changes behaviour

2017-09-30 Thread Charles Plessy
Le Sat, Sep 30, 2017 at 09:13:10AM +0200, Graham Inggs a écrit : > > Rebuilding the arch:all package r-bioc-biocgenerics against r-base-dev > 3.4.1.20170921-1 or 3.4.2-1 seems to cause the eventual failure of > autopkgtests in r-bioc-iranges and r-bioc-variantannotation. > > IRanges RUnit Tests

Bug#877288: r-base: Rebuilding r-bioc-biocgenerics with new R changes behaviour

2017-09-30 Thread Graham Inggs
Source: r-base Version: 3.4.1.20170921-1 Affects: r-bioc-biocgenerics r-bioc-iranges r-bioc-variantannotation User: ubuntu-de...@lists.ubuntu.com Usertags: origin-ubuntu artful autopkgtest Hi Dirk Rebuilding the arch:all package r-bioc-biocgenerics against r-base-dev 3.4.1.20170921-1 or 3.4.2-1