Bug#776063: dbus fails to upgrade rendering entire apt unusable

2015-01-23 Thread Yaroslav Halchenko
On Fri, 23 Jan 2015, Niels Thykier wrote: Thanks for reporting this issue. This is likely to be a bug in APT (or possibly in its interaction with dpkg), so I have CC'ed the relevant maintainers. @Yaroslav: Can you please provide your dpkg and apt logs to aid with the debugging? Last time

Bug#776063: dbus fails to upgrade rendering entire apt unusable

2015-01-23 Thread Yaroslav Halchenko
This looks very much like https://bugs.debian.org/771428. yes! unstable. Please check which dpkg version is used here. If it is between 1.17.17 and 1.17.21 there isn't much we can do about it. You ii apt 1.0.9.6 amd64commandline package manager ii dpkg

Bug#776063: dbus fails to upgrade rendering entire apt unusable

2015-01-23 Thread Yaroslav Halchenko
You should be able to get out of that apt state by just calling «dpkg --configure --pending». great -- thanks. FWIW This indeed allowed to mitigate it. -- Yaroslav O. Halchenko, Ph.D. http://neuro.debian.net http://www.pymvpa.org http://www.fail2ban.org Research Scientist,

Bug#776090: please package 4.7 for experimental

2015-01-23 Thread Yaroslav Halchenko
Source: insighttoolkit4 Version: 4.6 Severity: wishlist Thank you in advance. It was released in December 2014 P.S. needed for new release of ants package Cheers! -- System Information: Debian Release: 8.0 APT prefers testing APT policy: (900, 'testing'), (600, 'unstable'), (300,

Bug#777248: please update version of testtools (in experimental)

2015-02-06 Thread Yaroslav Halchenko
Package: python-testtools Version: 0.9.39-1 Severity: wishlist I just saw that some matchers definitions are not exposed (absent in __all__), so went upstream to see that was already fixed and that there is 1.5.0 release in Nov 2014. So it would be really neat to get fresh testtools into Debian

Bug#777708: please return configuration master_preferences file back under /etc

2015-02-11 Thread Yaroslav Halchenko
Package: chromium Version: 39.0.2171.71-2 Severity: normal File: /usr/lib/chromium/master_preferences master_preferences is a configuration file and in wheezy version lived happily under /etc/chromium/ and was useful to e.g. set a system-wide homepage . But in jessie it now will be located under

Bug#778706: flooding log with Not implemented reached in virtual void extensions::DisplayInfoProviderAura::UpdateDisplayUnitInfoForPlatform

2015-02-18 Thread Yaroslav Halchenko
Package: chromium Version: 40.0.2214.111-1 Severity: important Tags: upstream I have initially used jessie's version and observed the flood of such messages (cited below). Upstream is aware of it and I believe had it fixed recentish: https://code.google.com/p/chromium/issues/detail?id=442326 by

Bug#775643: pymvpa: FTBFS in jessie: tests failed

2015-02-12 Thread Yaroslav Halchenko
Hi guys, sorry for not chiming in timely and wasting your time trying to reproduce it David. This FTBFS is due to a non-robust unittest which fails at times on some data (which is randomly generated). Since that line of mvpa is out of development for a while (we have python-mvpa2) the best

Bug#775619: seaborn: FTBFS in jessie: Tests failures

2015-02-19 Thread Yaroslav Halchenko
On Thu, 19 Feb 2015, Mehdi Dogguy wrote: Yeah Stuart, thank you for the analysis... I even tried to figure out shim for compatibility but gave up and decided to let it die off from jessie encouraging people just to fetch recent one from NeuroDebian alongside with more recent statsmodels.

Bug#776572: fail2ban: $named missing as dependency in init script

2015-01-29 Thread Yaroslav Halchenko
Thanks Jochen, Added at least upstream for now $ git show commit c96415da2790e03ed8ab9b0f7c38dbc7a5da359e Author: Yaroslav Halchenko deb...@onerussian.com Date: Thu Jan 29 08:32:20 2015 -0500 added $named and ufw to debian-initd (Debian bug #776572) diff --git a/files/debian-initd b

Bug#776063: dbus fails to upgrade rendering entire apt unusable

2015-01-23 Thread Yaroslav Halchenko
Package: dbus Version: 1.8.12-1 Severity: critical Decided to upgrade my jessie/sid system today to see if remedy for hangouts not working came about (#770659) and upgrade failed because of dbus. Here is an output of (sudo apt-get -f install -y 21 | xsel -i) and I marked with critical severity

Bug#774689: fail2ban: Error in FilterPyinotify callback: 'module' object has no attribute '_strptime_time'

2015-01-06 Thread Yaroslav Halchenko
On Tue, 06 Jan 2015, Frederik Himpe wrote: Package: fail2ban Version: 0.8.13-1 Severity: normal When starting the fail2ban service, this appeared in the fail2ban log: 2015-01-06 10:12:05,935 fail2ban.filter [7980]: ERROR Error in FilterPyinotify callback: 'module' object has no

Bug#775272: fail2ban: Enabling php-url-fopen results in a FilterPyinotify error

2015-01-13 Thread Yaroslav Halchenko
On Tue, 13 Jan 2015, Francois Gouget wrote: On Tue, 13 Jan 2015, Yaroslav Halchenko wrote: [...] What I did have to change though is the logpath. My understanding is that it should parse the Apache access log so I did: -logpath = /var/www/*/logs/access_log +logpath = /var/log

Bug#775272: fail2ban: Enabling php-url-fopen results in a FilterPyinotify error

2015-01-13 Thread Yaroslav Halchenko
forcemerge 774689 775272 thanks Known issue... didn't have time unfortunately even though workaround is trivial - willing to try? $ git diff diff --git a/server/__init__.py b/server/__init__.py index 2b76f4b..74f3b75 100644 --- a/server/__init__.py +++ b/server/__init__.py @@ -23,3 +23,7 @@

Bug#775272: fail2ban: Enabling php-url-fopen results in a FilterPyinotify error

2015-01-13 Thread Yaroslav Halchenko
On Tue, 13 Jan 2015, Francois Gouget wrote: On Tue, 13 Jan 2015, Yaroslav Halchenko wrote: [...] Known issue... didn't have time unfortunately even though workaround is trivial - willing to try? This issue was systematic this morning and now it's gone and I have no idea why. (I see

Bug#778337: please provide Vcs- fields for the VCS where packaging maintained

2015-02-13 Thread Yaroslav Halchenko
Source: libusb-1.0 Version: 2:1.0.19-1 Severity: normal ATM $ debcheckout libusb-1.0-0 No repository found for package libusb-1.0-0. A Vcs-* field is missing in its source record. See Debian Developer's Reference 6.2.5:

Bug#777734: libfreenect version bump

2015-02-13 Thread Yaroslav Halchenko
On Wed, 11 Feb 2015, Benn Snyder wrote: libfreenect and associated packages are at v0.2.0 in Debian unstable.A However, upstream is at v0.5.2.A Please bump to the latest version. FWIW -- also uploaded backport builds of 0.5.1 to NeuroDebian happen you need them know. -- Yaroslav O.

Bug#771805: input-events still registers events from the mouse

2015-02-11 Thread Yaroslav Halchenko
according to $ sudo input-events -t 10 15 /dev/input/event15 bustype : BUS_I8042 vendor : 0x2 product : 0x1 version : 0 name: PS/2 Generic Mouse phys: isa0060/serio2/input0 bits ev : EV_SYN EV_KEY EV_REL ... events continue to arrive. so I guess the issue

Bug#777734: libfreenect version bump

2015-02-13 Thread Yaroslav Halchenko
On Fri, 13 Feb 2015, Yaroslav Halchenko wrote: On Wed, 11 Feb 2015, Benn Snyder wrote: libfreenect and associated packages are at v0.2.0 in Debian unstable.A However, upstream is at v0.5.2.A Please bump to the latest version. FWIW -- also uploaded backport builds of 0.5.1

Bug#775619: seaborn: FTBFS in jessie: Tests failures

2015-02-15 Thread Yaroslav Halchenko
On Mon, 19 Jan 2015 00:31:40 +1100 Stuart Prescott stu...@debian.org wrote: Control: tag -1 confirmed Relevant part (hopefully): File /usr/lib/python2.7/dist-packages/numpy/testing/decorators.py, line 146, in skipper_func return f(*args, **kwargs) File

Bug#778269: packaging for mkdocs -- vcs?

2015-02-20 Thread Yaroslav Halchenko
Hi Brian, thanks for working on packaging mkdocs. I wondered if I could fetch current state of packaging from somewhere (sorry if I have missed it in the report) -- wanted to give it a try. -- Yaroslav O. Halchenko, Ph.D. http://neuro.debian.net http://www.pymvpa.org http://www.fail2ban.org

Bug#775619: seaborn: FTBFS in jessie: Tests failures

2015-02-19 Thread Yaroslav Halchenko
tags -1 pending On Thu, 19 Feb 2015, Yaroslav Halchenko wrote: Any news? Should we add a removal hint for seaborn? Since you haven't removed yet -- gimme please few more days, I will fix it up for jessie I have just uploaded -3 with fixes for mentioned FTBFS and few others which could

Bug#771549: fail2ban: init script refuses to start after a crash

2015-03-21 Thread Yaroslav Halchenko
On Sat, 21 Mar 2015, Marc F. Clemente wrote: Thanks to the package maintainer, version 0.9.1+git44-gd65c4f8-1 of fail2ban is available in the experimental repository. I have tried this a few days on a few different computers, and I have not had an issue with segfaults in sqlite3. Others

Bug#781203: cmdline API breakage -- E: Command line option --installed is not understood

2015-03-25 Thread Yaroslav Halchenko
Package: apt Version: 1.0.9.7 Severity: important File: /usr/bin/apt-cache I just have discovered that our scripts broke on jessie because of now --installed apparently is not supported, although still referred to in the manpage and changelog doesn't point to any deprecation. So I just assume

Bug#775771: Bug#781203: cmdline API breakage -- E: Command line option --installed is not understood

2015-03-26 Thread Yaroslav Halchenko
On Thu, 26 Mar 2015, David Kalnischkies wrote: On Wed, Mar 25, 2015 at 08:04:24PM -0400, Yaroslav Halchenko wrote: I just have discovered that our scripts broke on jessie because of now --installed apparently is not supported, although still referred to in the manpage and changelog

Bug#781606: provide a shortcut/option to drop into shell in current directory

2015-03-31 Thread Yaroslav Halchenko
Package: ncdu Version: 1.10-1 Severity: wishlist ncdu is way nice -- thanks Yoran! (ditching baobab now ;) ) one immediate use case I ran into is ability to run shell in a directory I am currently in within ncdu (e.g. to run git clean -dfx). It would be nice if there was an option which would

Bug#779810: /usr/bin/funccount: line 110: function_profile_enabled: Permission denied

2015-03-04 Thread Yaroslav Halchenko
Package: perf-tools-unstable Version: 0.0.1~20140723+git942be0b-4 Severity: important File: /usr/bin/funccount root@xxx:/tmp# funccount 'bio_*' Tracing bio_*... Ctrl-C to end. /usr/bin/funccount: line 110: function_profile_enabled: Permission denied ERROR: enabling function profiling. Exiting.

Bug#779035: Upstream is up to 4.1.0

2015-02-28 Thread Yaroslav Halchenko
Package: python-tornado Version: 3.2.2-1.1 Followup-For: Bug #779035 Fresh version of ipython 3.0 will require tornado = 4.0 so fresh version would be well appreciated! thanks! -- System Information: Debian Release: 8.0 APT prefers testing APT policy: (900, 'testing'), (600, 'unstable'),

Bug#779472: RFP: python-mistune -- markdown parser in pure Python with renderer feature

2015-02-28 Thread Yaroslav Halchenko
Package: wnpp Severity: wishlist * Package name: python-mistune Version : 0.5.0 Upstream Author : Hsiaoming Yang m...@lepture.com * URL : http://mistune.readthedocs.org/en/latest/ * License : BSD-3 Programming Lang: Python Description : markdown parser

Bug#779847: please ship baseline_images (currently matplotlib.testing.decorators is not importable)

2015-03-05 Thread Yaroslav Halchenko
Package: python-matplotlib Version: 1.4.2-3.1 Severity: normal $ python -c 'import matplotlib.testing.decorators' Traceback (most recent call last): File string, line 1, in module File /usr/lib/python2.7/dist-packages/matplotlib/testing/decorators.py, line 17, in module import

Bug#779847: Acknowledgement (please ship baseline_images (currently matplotlib.testing.decorators is not importable))

2015-03-05 Thread Yaroslav Halchenko
or at least don't fail the import itself -- Yaroslav O. Halchenko, Ph.D. http://neuro.debian.net http://www.pymvpa.org http://www.fail2ban.org Research Scientist,Psychological and Brain Sciences Dept. Dartmouth College, 419 Moore Hall, Hinman Box 6207, Hanover, NH 03755 Phone: +1

Bug#775619: seaborn: FTBFS in jessie: Tests failures

2015-02-20 Thread Yaroslav Halchenko
On Fri, 20 Feb 2015, Mehdi Dogguy wrote: What is the impact of disabling statsmodels 0.6 features in seaborn? Also, AFAICS, the runtime error is not catched, so I guess the program will just kill itself? not kill but throw an exception, and quite an informative one ;) Why not just setting

Bug#546527: is it resolved? [rxvt-unicode-ml: Menus grab pointer and lock X11]

2015-03-26 Thread Yaroslav Halchenko
Was the bug resolved? version assignment was removed but no comments/closed statement issued -- Yaroslav O. Halchenko, Ph.D. http://neuro.debian.net http://www.pymvpa.org http://www.fail2ban.org Research Scientist,Psychological and Brain Sciences Dept. Dartmouth College, 419 Moore

Bug#782963: Please provide a python3 module

2015-04-19 Thread Yaroslav Halchenko
Help indeed would be appreciated On April 19, 2015 3:06:26 PM EDT, Paul Tagliamonte paul...@debian.org wrote: Package: statsmodels Severity: wishlist User: py3porters-de...@lists.alioth.debian.org Usertags: patchme-python3 thanks Hello there! This package contains a trove classifier[1] in its

Bug#541637: I think I have ran into it as well

2015-05-07 Thread Yaroslav Halchenko
Today, that is 6 years after initial report ;) here are the detail when running with git from current master v2.4.0-53-g8440f74 Starting program: /home/yoh/proj/misc/git/git push origin master [Thread debugging using libthread_db enabled] Using host libthread_db library

Bug#784697: nib-ls has python3 shebang while comes from python2 package

2015-05-07 Thread Yaroslav Halchenko
Package: python-nibabel Version: 1.3.0-2 Severity: normal Detected on a wheezy backport -- System Information: Debian Release: 8.0 APT prefers testing APT policy: (900, 'testing'), (600, 'unstable'), (300, 'experimental') Architecture: amd64 (x86_64) Foreign Architectures: i386 Kernel:

Bug#770631: statsmodels: Build-Depends on nodejs not satisfiable on some architectures

2015-05-13 Thread Yaroslav Halchenko
Thank you Edmund. If you are a DD feel welcome to upload an NMU with such a workaround for now. Otherwise I will look into it next week (traveling/busy atm) to simply not build docs at all whenever only binary-arch build ahs thus removing those from straight build depends altogether. Cheers On

Bug#781606: provide a shortcut/option to drop into shell in current directory

2015-04-05 Thread Yaroslav Halchenko
On Sun, 05 Apr 2015, Yoran Heling wrote: Oh? Are Debian bug reports automatically forwarded to me now? Sweet! ;) nah -- I think I have explicitly CCed to you. BUT you can subscribe to the bug reports on https://packages.qa.debian.org/n/ncdu.html (lower left corner) On 2015-03-31, Yaroslav

Bug#786448: [RFR] templates://neurodebian/{neurodebian.templates}

2015-06-08 Thread Yaroslav Halchenko
Dear i18n team et al! First of all thank you again for all your work/contributions! I thought to jump on addressing them all right away but other RL duties overwhelmed me. I hope to actually take care about this in 2 weeks when I get back and schedule normalizes. Meanwhile my few comments are

Bug#470417: some people fixed it already

2015-06-03 Thread Yaroslav Halchenko
On Wed, 03 Jun 2015, Libor Klepáč wrote: any official progress on support of ipv6, please? unfortunately nope... Scarce time/people resources I tried to clone https://github.com/yarikoptic/fail2ban.git there are some ipv6 branches, but ?none? is for fail2ban version in

Bug#789606: new upstream release is available (1.0)

2015-06-22 Thread Yaroslav Halchenko
Package: python-scrapy Version: 0.24.2-1 Severity: wishlist Just to let you know. There was quite a bit of API changes http://doc.scrapy.org/en/1.0/news.html but I don't see any reverse-dependencies on scrapy, so should be not that painful whenever new version hits archive. -- System

Bug#789695: neurodebian: [l10n:cs] Initial Czech PO debconf translation

2015-06-23 Thread Yaroslav Halchenko
On Tue, 23 Jun 2015, Christian PERRIER wrote: Quoting Michal Simunek (michal.simu...@gmail.com): Package: neurodebian Version: 0.35 Severity: wishlist Tags: l10n patch Dear Maintainer, In attachment there is initial Czech translation of PO debconf template (cs.po) for package

Bug#789706: cron job keeps complaining about expiration of some files, which do not expire if removed manually

2015-06-23 Thread Yaroslav Halchenko
Package: apt-cacher-ng Version: 0.8.0-3 Severity: normal First of all thanks for the cacher -- it is VERY handy! I guess due to my ignorance in underworkings of the cacher I can't figure out what is actually wrong. Daily I get emails like /etc/cron.daily/apt-cacher-ng: Error(s) occured while

Bug#789706: cron job keeps complaining about expiration of some files, which do not expire if removed manually

2015-06-23 Thread Yaroslav Halchenko
On Tue, 23 Jun 2015, Eduard Bloch wrote: $ grep -B1 Not Found /var/log/apt-cacher-ng/maint_*log.html Checking/Updating smaug/http.debian.net/debian/dists/wheezy/contrib/binary-i386/Packages.bz2... a) What's smaug? smaug is the name of the server which hosts apt-cacher-ng which is used

Bug#789999: just reports IO Error on attempt to generate a snapshot (btrfs)

2015-06-25 Thread Yaroslav Halchenko
Package: snapper Version: 0.2.4-1 Severity: normal Just discovered snapper -- sounds like an ultimate tool for me trying btrfs. Thanks for packaging/maintaining it for Debian! It could well be an RTFM, but since there is no README.Debian with minimal guidance on how to get started I just copied

Bug#757843: notes

2015-06-24 Thread Yaroslav Halchenko
upstream doesn't ship tests/ nor for w3lib, neither for scrapy. Dialog began: https://github.com/scrapy/w3lib/pull/34 scrapy needs testfixtures module, not in Debian, for quite a few tests (and jmespath which is in debian) -- Yaroslav O. Halchenko, Ph.D. http://neuro.debian.net

Bug#775532: citeproc/data/schema/csl.rng license Re: Bug#775532: RFS: citeproc-py/0.3.0-1 [ITP] -- Python library for CSL based bibliography processing

2015-06-13 Thread Yaroslav Halchenko
On Tue, 12 May 2015, Andrey Rahmatullin wrote: I'm afraid the license for citeproc/data/schema/ is not DFSG-free: Permission to freely use, copy and distribute. Dear Brecht, I am not sure if you were contacted already about this issue. The rights field of citeproc/data/schema/csl.rng is a

Bug#784898: I would be interested

2015-06-10 Thread Yaroslav Halchenko
to see this package in Debian so I can provide review/sponsorship when time allows (hopefully in the next day or so). meanwhile: - make package really ready -- vcs fields should point to existing repository. Do you want to keep it under collab-maint? Then please join the team at

Bug#790751: openpyxl: new upstream release

2015-07-01 Thread Yaroslav Halchenko
On Wed, 01 Jul 2015, Sandro Tosi wrote: Source: openpyxl Severity: wishlist Hello, there is a new upstream release out there, https://pypi.python.org/pypi/openpyxl/2.2.5 (2.3.0-b1 if you like beta releases too), would be great to update the package (and in the process fix the watch

Bug#790754: non-installable due to non-python3 compliant code

2015-07-01 Thread Yaroslav Halchenko
Package: python3-openpyxl Version: 2.2.4-1 Severity: serious Tags: upstream Setting up python3-openpyxl (2.2.4-1) ... File /usr/lib/python3/dist-packages/openpyxl/benchmarks/styles.py, line 64 print '%s: ' % func.__name__, ^ SyntaxError: Missing parentheses in call to 'print'

Bug#790829: will not FTBFS with fresh Cython 0.22.1

2015-07-01 Thread Yaroslav Halchenko
Package: bzr Version: 2.6.0+bzr6602-2 Severity: important I have just now uploaded fresh cython to sid and upon my testing bzr has experienced problems (due to tests failing) while building with fresh cython while build passed with the previous one, e.g.

Bug#668121: CDE build on mipsel

2015-07-02 Thread Yaroslav Halchenko
Great, thank you On July 2, 2015 7:55:26 AM EDT, Arturo Borrero Gonzalez arturo.borrero.g...@gmail.com wrote: Hi there, I've opened an upstream bug [0] to push forward a fix for mipsel. best regards. [0] https://github.com/pgbovine/CDE/issues/15 -- Sent from a phone which beats iPhone. --

Bug#791346: fresh upstream release available (1.3.3) and needed for ITP tigervnc

2015-07-03 Thread Yaroslav Halchenko
Package: libfltk1.3-dev Version: 1.3.2-6+b1 Severity: wishlist They introduced new API which current tigervnc relies upon (I see at least having fullscreen_screens needed: - Support for full screen windows over multiple monitors.). It would be nice if fltk in debian got updated. Thanks in

Bug#791346: Acknowledgement (fresh upstream release available (1.3.3) and needed for ITP tigervnc)

2015-07-04 Thread Yaroslav Halchenko
I would've also appreciated if patches were split out and not to rely on git merging etc . Without atomic patches becomes difficult to resolve conflicts etc (tried to quickly update package to test for you) -- Yaroslav O. Halchenko, Ph.D. http://neuro.debian.net http://www.pymvpa.org

Bug#790924: pandas: FTBFS: copy() got an unexpected keyword argument 'font'

2015-07-02 Thread Yaroslav Halchenko
On Thu, 02 Jul 2015, Aaron M. Ucko wrote: ERROR: test_creating_and_reading_multiple_sheets (pandas.io.tests.test_excel.ExcelReaderTests) -- Traceback (most recent call last): File

Bug#791346: fresh upstream release available (1.3.3) and needed for ITP tigervnc

2015-07-06 Thread Yaroslav Halchenko
On Tue, 07 Jul 2015, Aaron M. Ucko wrote: But what I wanted to say is just thanks for maintaining and use whatever means you find most comfortable for you -- My cry was out of the moment of weakness I guess ;) Don't worry, no offense taken. What does concern me is that, despite claiming

Bug#791640: fail2ban: refuses to start when no files are found for a glob in logpath

2015-07-06 Thread Yaroslav Halchenko
On Tue, 07 Jul 2015, Vincent Lefevre wrote: The /var/log/syslog file is more complete and gives the reason of the error: Jul 7 03:37:24 zira fail2ban-client[789]: ERROR No file(s) found for glob /var/log/apache*/*error.log Jul 7 03:37:24 zira fail2ban-client[789]: ERROR

Bug#791346: fresh upstream release available (1.3.3) and needed for ITP tigervnc

2015-07-05 Thread Yaroslav Halchenko
On Sun, 05 Jul 2015, Aaron M. Ucko wrote: Thanks for pointing it out, and sorry you've been finding my packaging approach hard to deal with -- for my part, I've always found patch systems unnecessarily cumbersome, especially when sources are already under conventional version control. I was

Bug#786897: pyglet 1.2 was finally released

2015-05-26 Thread Yaroslav Halchenko
Package: python-pyglet Version: 1.1.4.dfsg-2 Severity: normal Due to the age of 1.1.4 (from 2010) I am marking this as normal. 1.2 was released this Feb and we should upgrade unstable to it soonish! -- System Information: Debian Release: 8.0 APT prefers testing APT policy: (900,

Bug#786448: [ITR] templates://neurodebian/{neurodebian.templates}

2015-05-26 Thread Yaroslav Halchenko
Sure - go ahead with the review. Thank you ask guys for your work! On May 26, 2015 12:48:39 AM EDT, Christian PERRIER bubu...@debian.org wrote: Dear Debian maintainer, The Debian internationalisation team and the Debian English localisation team will soon begin the review of the debconf

Bug#791654: neurodebian: [INTL:ru] Russian debconf templates translation

2015-07-07 Thread Yaroslav Halchenko
On Tue, 07 Jul 2015, Christian PERRIER wrote: A typo was found in the original English strings where dpkg-reconfigure was spelled as dpg-reconfigure. This is fixed in the attached file (and also fixed in the translation of course) thank you Christian for all your work. Since I am aware of

Bug#795915: please upload 0.8.3 to unstable

2015-08-17 Thread Yaroslav Halchenko
Package: python-smmap Version: 0.8.3-1 Severity: normal fresh release/snapshot of python-git needs updated/fixed version, so it would be nice to see 0.8.3 in unstable to progress forward. -- System Information: Debian Release: stretch/sid APT prefers testing APT policy: (900, 'testing'),

Bug#704214: little update -- Git repo is available with initial packaging

2015-08-21 Thread Yaroslav Halchenko
retitle 704214 ITP: numbers -- database of interesting numbers and a tool to compare against it owner 704214 ! thanks http://anonscm.debian.org/cgit/collab-maint/numbers.git/ -- Yaroslav O. Halchenko, Ph.D. http://neuro.debian.net http://www.pymvpa.org http://www.fail2ban.org Research

Bug#785953: biosig4c++: diff for NMU version 1.4.1-1.1

2015-08-23 Thread Yaroslav Halchenko
Thank you Luca -- no need to delay if you want to rush it ;) Cheers! On Sun, 23 Aug 2015, Luca Falavigna wrote: Dear maintainer, I've prepared an NMU for biosig4c++ (versioned as 1.4.1-1.1) and uploaded it to DELAYED/2. Please feel free to tell me if I should delay it longer. Regards.

Bug#796648: RFP: python-q -- quick and dirty debugging output for tired Python programmers

2015-08-23 Thread Yaroslav Halchenko
Package: wnpp Severity: wishlist * Package name: python-q Version : 2.6 Upstream Author : Ka-Ping Yee * URL : https://github.com/zestyping/q * License : Apache 2.0 Programming Lang: Python Description : quick and dirty debugging output for tired Python

Bug#796196: Acknowledgement (strip .py suffix from diffoscope within sources repo as well)

2015-08-20 Thread Yaroslav Halchenko
ignore the patch I have submitted (done in a rush, incorrect). But what about the idea in general? -- Yaroslav O. Halchenko, Ph.D. http://neuro.debian.net http://www.pymvpa.org http://www.fail2ban.org Research Scientist,Psychological and Brain Sciences Dept. Dartmouth College, 419

Bug#796204: add --debugger (or alike) option to fall into debugger upon failure

2015-08-20 Thread Yaroslav Halchenko
Package: diffoscope Version: 30 Severity: wishlist ATM diffoscope has overzealos try: sys.exit(main()) except (Exception, KeyboardInterrupt): traceback.print_exc() sys.exit(2) 1. upon KeyboardInterrupt probably makes sense not to print the stack 2. it

Bug#796202: crashes with TypeError: execv() arg 2 must contain only strings

2015-08-20 Thread Yaroslav Halchenko
Package: diffoscope Version: 30 Severity: normal Tags: upstream The usecase is probably quite obscure $ diffoscope tmpznwsj7es tmpZu3RvY Traceback (most recent call last): File /usr/bin/diffoscope, line 115, in module sys.exit(main()) File /usr/bin/diffoscope, line 102, in main

Bug#796196: Acknowledgement (strip .py suffix from diffoscope within sources repo as well)

2015-08-20 Thread Yaroslav Halchenko
Phone: +1 (603) 646-9834 Fax: +1 (603) 646-1419 WWW: http://www.linkedin.com/in/yarik From c97a8412382bc45a7c5e5d6a8953caf99b22d11a Mon Sep 17 00:00:00 2001 From: Yaroslav Halchenko deb...@onerussian.com Date: Thu, 20 Aug 2015 10:49:45 +0200 Subject: [PATCH 1/2] RF

Bug#796196: strip .py suffix from diffoscope within sources repo as well)

2015-08-20 Thread Yaroslav Halchenko
On Thu, 20 Aug 2015, Mattia Rizzolo wrote: ignore the patch I have submitted (done in a rush, incorrect). But what about the idea in general? Umh, but why? Shipped package does not have .py. Also, why should we move the script to an another directory? (and then we would need to set

Bug#796309: RFP: gox -- helper tool for Go cross-compilation

2015-08-21 Thread Yaroslav Halchenko
Package: wnpp Severity: wishlist * Package name: gox Version : 0.3.0 Upstream Author : Mitchell Hashimoto * URL : https://github.com/mitchellh/gox * License : Mozilla MPL-2.0 Programming Lang: Go Description : helper tool for Go cross-compilation Gox

Bug#796196: strip .py suffix from diffoscope within sources repo as well

2015-08-20 Thread Yaroslav Halchenko
xz-utils 5.1.1alpha+20120614-2.1 diffoscope suggests no packages. -- no debconf information From 13a9076393bddbc9689069a0ff1dd6803691bf0c Mon Sep 17 00:00:00 2001 From: Yaroslav Halchenko deb...@onerussian.com Date: Thu, 20 Aug 2015 10:49:45 +0200 Subject: [PATCH] RF

Bug#793945: [Python-modules-team] Bug#793945: pbr-1.3.0 in unstable?

2015-07-30 Thread Yaroslav Halchenko
On Thu, 30 Jul 2015, Michael Fladischer wrote: Hi Thomas, it seems that there is one missing depeendency for python-mock-1.3.0 still in experiamental: pbr-1.3.0 Could you do an upload into unstable? as far as I have checked, situation is more tricky -- circular versioned depends: for

Bug#794041: please please please upload 1.3.0 to unstable to help resolving #793945

2015-07-29 Thread Yaroslav Halchenko
Package: python-pbr Version: 1.3.0-2 Severity: normal Currently python-mock in sid is completely f.cked, and to help it to become usable again we would need a recent pbr in sid. Would you be so kind to upload 1.3.0 to unstable asap or there is some factors forbiding it (number of rdepends is

Bug#628183: Is there any VCS with the freesurfer packaging code

2015-07-31 Thread Yaroslav Halchenko
On Wed, 29 Jul 2015, Andreas Tille wrote: just to clean up Debian Med tasks: Is the work that was started somewhere in VCS? it did... later I took that repo from public view since it had some proprietary bits committed in a history so maybe just wipe out vcs field Do you see any sense to

Bug#793945: [Python-modules-team] Bug#793945: pbr-1.3.0 in unstable?

2015-07-31 Thread Yaroslav Halchenko
I have uploaded 0.11.0 in Sid. Great! Thanks! I will hold my breath until it appears in the archive ;) -- Yaroslav O. Halchenko, Ph.D. http://neuro.debian.net http://www.pymvpa.org http://www.fail2ban.org Research Scientist,Psychological and Brain Sciences Dept. Dartmouth

Bug#794145: fills up logs with useless (?) Invalid response packet from host ...

2015-07-30 Thread Yaroslav Halchenko
Package: avahi-daemon Version: 0.6.31-5 Severity: normal wastes disk-spac, obscures monitoring, etc. Manages to spit out about 10 a second (that will be 36/hour! or more than a million in a work day!) Meanwhile I guess I will just have to patch it manually $ journalctl -f -- Logs begin at

Bug#628183: Is there any VCS with the freesurfer packaging code

2015-07-31 Thread Yaroslav Halchenko
On Fri, 31 Jul 2015, Andreas Tille wrote: I see why not ;) From time to time I'm hunting the errors in the log above and freesurfer is the only one I can not explain myself. Is there any chance that the VCS might come back in the not to distant future ... at least the debian/ dir? done!

Bug#793129: [Python-apps-team] Bug#793129: cython: Typecast array to memoryview causes compiler crash

2015-07-21 Thread Yaroslav Halchenko
Sounds like upstream issue could you please check with them? Cheers On July 21, 2015 10:54:21 AM EDT, Dan Greene dan-gre...@wi.rr.com wrote: Package: cython Version: 0.22.1-1 Severity: normal Dear Maintainer, Trying to cast a pointer to a memoryview object causes a compiler crash. A simple

Bug#793148: tests fail when running locally in a fresh/clean clone -- require python2.6?

2015-07-21 Thread Yaroslav Halchenko
Package: dh-python Version: 2.20150719 Severity: normal $ git describe 2.20150719 $ make tests 21 | tail -n 100 warnings.warn(msg) running build running build_py creating build creating build/lib.linux-x86_64-2.7 creating build/lib.linux-x86_64-2.7/foo copying lib/foo/baz.py -

Bug#793155: incorrectly follows symlinks (patch provided)

2015-07-21 Thread Yaroslav Halchenko
Package: metapixel Version: 1.0.2-7.1+b2 Severity: normal Tags: patch upstream If original file comes from another directory, symlink would be relative to that directory, not a current one, so mere symlink path would not be sufficient. With a given patch it would get a full path to the

Bug#793349: RFP: openssh-hpn -- secure shell (SSH) client/server with HPN (performance) patches

2015-07-22 Thread Yaroslav Halchenko
Package: wnpp Severity: wishlist * Package name: openssh-hpn Version : 6.9p1 Upstream Author : Chris Rapier rap...@psc.edu * URL : https://github.com/rapier1/openssh-portable * License : BSD Programming Lang: C Description : secure shell (SSH)

Bug#793562: include actual upstream changelog please

2015-07-24 Thread Yaroslav Halchenko
Package: python-py Version: 1.4.30-1 Severity: minor $ zcat /usr/share/doc/python-py/changelog.gz .. _`changelog`: .. include:: ../CHANGELOG Cheers, -- System Information: Debian Release: stretch/sid APT prefers testing APT policy: (900, 'testing'), (600, 'unstable'), (300,

Bug#730532: [python-sklearn] Please support Python3

2015-07-13 Thread Yaroslav Halchenko
, Bastian Am 12.07.2015 um 06:03 schrieb Yaroslav Halchenko: On Tue, 26 Nov 2013, Bastian Venthur wrote: [...] according to the official changelog, scikit learn 0.14 should support Python 3.3, but the requirements of the Debian package forbid that version. Could you try to loosen the restricion

Bug#792700: RFP: vcrpy -- mock your HTTP interactions to simplify and speed up testing

2015-07-17 Thread Yaroslav Halchenko
Package: wnpp Severity: wishlist * Package name: vcrpy Version : 1.6.1 Upstream Author : Kevin McCarthy m...@kevinmccarthy.org * URL : https://github.com/kevin1024/vcrpy * License : MIT/X Programming Lang: Python Description : mock your HTTP

Bug#793023: please upload freshier release (3.0.6) to experimental

2015-07-20 Thread Yaroslav Halchenko
Package: swig3.0 Version: 3.0.2-1 Severity: wishlist There is 3.0.6 release. But probably shouldn't get to unstable -- we have got reports of problems building with it (PyMVPA), whenever 3.0.2 worked fine Cheers! -- System Information: Debian Release: stretch/sid APT prefers testing APT

Bug#792295: allow building with cython and remove build-conflicts on it

2015-07-13 Thread Yaroslav Halchenko
Package: python-lxml Version: 3.4.2-1 Severity: normal Now installing build-depends on a development box would remove cython. I found in changelog a note from 6 years ago I guess for that reason: lxml (2.1.4-1) unstable; urgency=low * New upstream version. * Remove the build dependency on

Bug#792802: update?

2015-07-20 Thread Yaroslav Halchenko
Hi Daniel, I bet Noah wouldn't mind some help. are you a part of the python-modules team? if so -- we could proceed and I will sponsor. If not -- upload to mentor, I will review, sponsor, push changes to python-modules svn Cheers! -- Yaroslav O. Halchenko, Ph.D. http://neuro.debian.net

Bug#803098: segfaults upon closing evince window leading to the restart of gnome-shell

2015-10-26 Thread Yaroslav Halchenko
Package: libatspi2.0-0 Version: 2.18.1-1 Severity: grave File: /usr/lib/x86_64-linux-gnu/libatspi.so.0.0.1 NB It might be also related or triggering another issue I have detected after recent upgrade which completely stalls the box: #803087. If I open evince (3.18.0... currently upgrading evince

Bug#803087: Acknowledgement (hangs often after upgrade to 4.2.0. last time: BUG: unable to handle kernel NULL pointer dereference at 0000000000000040)

2015-10-26 Thread Yaroslav Halchenko
FWIW: did it again: pressed Ctrl-Win-c while in evince leading to Oct 26 14:57:01 hopa kernel: [ 3561.805553] gnome-shell[2221]: segfault at 18 ip 7f288a494c22 sp 7ffd7e8f48f0 error 4 in libatspi.so.0.0.1[7f288a47e000+31000] Oct 26 14:57:03 hopa gnome-shell[8344]: GNOME Shell started

Bug#802088: openpyxl Git repository lagging way behind

2015-10-26 Thread Yaroslav Halchenko
On Mon, 26 Oct 2015, Andreas Tille wrote: > Hi, > since python-skbio is in danger of beeing removed due to > 802088: openpyxl: FTBFS: /bin/sh: 1: python3.5: not found > I intended to have a look into openpyxl. I noticed that the packaging > Git is lagging *way* behind the current package.

Bug#798574: experiencing the same on HP ZBook 14

2015-10-26 Thread Yaroslav Halchenko
In my case such reports seems often precede the complete lock-down of the system. It used to work just fine, and I don't see similar *ERROR* messages in older entries, but with some recent upgrade within testing/sid things became really unstable. Seems I get into complete lockdown once or twice

Bug#803075: please symlink mrconvert into /usr/bin

2015-10-26 Thread Yaroslav Halchenko
Package: mrtrix Version: 0.2.12-1+b2 Severity: normal I see no reason why mrconvert shouldn't be available from under /usr/bin whenever mrview already is. may be even all the ones with mr prefix could be (I didn't check for possible collisions within debian packages content besides mrconvert

Bug#803087: hangs often after upgrade to 4.2.0. last time: BUG: unable to handle kernel NULL pointer dereference at 0000000000000040

2015-10-26 Thread Yaroslav Halchenko
Package: src:linux Version: 4.2.3-2 Severity: critical File: /boot/vmlinuz-4.2.0-1-amd64 system: HP Zbook 14 with dual video -- onboard Intel + Radeon (for 3D accel): $> lspci | grep VGA 00:02.0 VGA compatible controller: Intel Corporation Haswell-ULT Integrated Graphics Controller (rev 0b)

Bug#804720: segfaults gnome3 upon moving window from one workspace into another

2015-11-10 Thread Yaroslav Halchenko
Package: libatspi2.0-0 Version: 2.18.1-2 Severity: grave I have previously reported #803098 segfaults upon closing evince window leading to the restart of gn which was closed and indeed (either due to the fix or upgrade in general) evince doesn't crash gnome any longer. THANKS! But now moving

Bug#804858: --list-boots: Failed to determine boots: No data available

2015-11-12 Thread Yaroslav Halchenko
On Thu, 12 Nov 2015, Michael Biebl wrote: > > $> journalctl -b 0 | head > > -- Logs begin at Sun 2015-11-01 20:00:40 EST, end at Thu 2015-11-12 > > 08:26:59 EST. -- > > Nov 12 08:24:25 hopa systemd-journald[325]: Runtime journal > > (/run/log/journal/) is currently using 8.0M. > >

Bug#804881: adjusted PATH should list fsl's path first, not last

2015-11-12 Thread Yaroslav Halchenko
Package: fsl-core Version: 5.0.8-5 Severity: normal Since the whole purpose of this dance to enable fsl tools for FSL users, prioritarizing over possible other conflicts inthe PATH (e.g. /usr/bin/cluster from grpahviz), IMHO it might be better to serve FSL's path first I guess. -- System

Bug#734394: status?

2015-11-11 Thread Yaroslav Halchenko
Since it was only a single file, I just decided for now to not bother packaging it separately and just ship it as a part of the seaborn package where you can find it atm On Wed, 11 Nov 2015, Dererk wrote: > Hi there. > It appears that this ITP has not had any activity for quite some time. >

Bug#804720: closed by Samuel Thibault <sthiba...@debian.org> (Bug#804720: fixed in at-spi2-core 2.18.2-1)

2015-11-10 Thread Yaroslav Halchenko
ho ho - that is the speed... I was about to provide the backtrace which indeed seems to point to the issue fixed. I guess I will just build from git for now since it would take time for it to get to archive (and there is .3-1 already ;) ) once again thanks and hopefully you don't hear from

Bug#654924: TigerVNC: Include as official package?

2015-11-02 Thread Yaroslav Halchenko
On Mon, 02 Nov 2015, Andreas Tscharner wrote: > Hello World, > The package seems to have been finished on July 1st, 2012, but has > not yet been included into the official package repository? > What is wrong with it? that old version was rejected, primarily for demand to reuse xorg sources

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