Re: request for r-cran packages

2019-03-20 Thread Andreas Tille
On Wed, Mar 20, 2019 at 05:31:01PM +0100, Tony Travis wrote: > This is not a problem with Debian, it's really a problem with Ubuntu's > relationship to Debian - Please feel free to tell me I would not have these > problems if I used Debian :-) I do not intend to repeat what I've said previously.

Re: request for r-cran packages

2019-03-20 Thread Tony Travis
On 20/03/2019 17:01, Andreas Tille wrote: [...] Well, I *personally* think that your decision to rely on those PPA and hardly upgradable releases is asking for trouble at some point in time. You are refusing the help of the men power of the Debian Med team who is usually as quick as backports

Re: Debian-Med packaging of EMMAX

2019-03-20 Thread Steffen Möller
Excellent news, many thanks! Steffen On 20.03.19 14:29, Hyun Min Kang wrote: Andreas - sorry for my oversight on the previous email. There is no license attached with EMMAX, and you can consider it to be equivalent to widely used public license (e.g. MIT license). Hyun.

Re: request for r-cran packages

2019-03-20 Thread Andreas Tille
On Wed, Mar 20, 2019 at 04:46:08PM +0100, Tony Travis wrote: > > These, as with the out-of-date "Abyss" package in Ubuntu 18.04 all seem to > be consequences of the same "no rolling release" policy of Ubuntu and do not > reflect in any way a criticism of Debian. I've got backports enabled, but it

Re: request for r-cran packages

2019-03-20 Thread Tony Travis
On 20/03/2019 16:36, Andreas Tille wrote: On Wed, Mar 20, 2019 at 04:06:33PM +0100, Steffen Möller wrote: I can package one or two of these R packages. Please direct me which one I should address first. None, all are in new as I wrote here

Re: request for r-cran packages

2019-03-20 Thread Steffen Möller
On 20.03.19 16:36, Andreas Tille wrote: On Wed, Mar 20, 2019 at 04:06:33PM +0100, Steffen Möller wrote: I can package one or two of these R packages. Please direct me which one I should address first. None, all are in new as I wrote here

Re: request for r-cran packages

2019-03-20 Thread Tony Travis
On 20/03/2019 16:32, Andreas Tille wrote: On Wed, Mar 20, 2019 at 04:23:44PM +0100, Tony Travis wrote: Probably trying to do too many things at once just now :-| Please don't spend any time packaging the R libraries I requested, because I'm going to use R 3.5 from now on. Sorry about the

Re: request for r-cran packages

2019-03-20 Thread Andreas Tille
On Wed, Mar 20, 2019 at 04:06:33PM +0100, Steffen Möller wrote: > I can package one or two of these R packages. Please direct me which one > I should address first. None, all are in new as I wrote here https://lists.debian.org/debian-med/2019/03/msg00075.html I'd **strongly** recommend to

Re: request for r-cran packages

2019-03-20 Thread Andreas Tille
On Wed, Mar 20, 2019 at 04:23:44PM +0100, Tony Travis wrote: > Probably trying to do too many things at once just now :-| > > Please don't spend any time packaging the R libraries I requested, because > I'm going to use R 3.5 from now on. > > Sorry about the false alarm, requesting packaging.

Re: request for r-cran packages

2019-03-20 Thread Steffen Möller
On 20.03.19 16:19, Tony Travis wrote: On 20/03/2019 16:06, Steffen Möller wrote: On 20.03.19 13:48, Andreas Tille wrote: Hi Tony, On Wed, Mar 20, 2019 at 12:25:32PM +0100, Tony Travis wrote: Yes, that would be great if you're willing, but I would struggle to do it on my own despite you

Re: Debian-Med packaging of EMMAX

2019-03-20 Thread Hyun Min Kang
Andreas - sorry for my oversight on the previous email. There is no license attached with EMMAX, and you can consider it to be equivalent to widely used public license (e.g. MIT license). Hyun. - Hyun Min Kang, Ph.D. Associate Professor of

Re: request for r-cran packages

2019-03-20 Thread Tony Travis
On 20/03/2019 16:19, Tony Travis wrote: On 20/03/2019 16:06, Steffen Möller wrote: On 20.03.19 13:48, Andreas Tille wrote: Hi Tony, On Wed, Mar 20, 2019 at 12:25:32PM +0100, Tony Travis wrote: Yes, that would be great if you're willing, but I would struggle to do it on my own despite you

Re: request for r-cran packages

2019-03-20 Thread Tony Travis
On 20/03/2019 16:06, Steffen Möller wrote: On 20.03.19 13:48, Andreas Tille wrote: Hi Tony, On Wed, Mar 20, 2019 at 12:25:32PM +0100, Tony Travis wrote: Yes, that would be great if you're willing, but I would struggle to do it on my own despite you explaining to me several times what to

Re: PIQUE packaging (Was: request for r-cran packages)

2019-03-20 Thread Tony Travis
On 20/03/2019 16:04, Andreas Tille wrote: Hi Tony, On Wed, Mar 20, 2019 at 01:48:05PM +0100, Andreas Tille wrote: Yes, that would be great if you're willing, but I would struggle to do it on my own despite you explaining to me several times what to do... Its a pleasure for me to look at this

Re: Debian-Med packaging of EMMAX

2019-03-20 Thread Andreas Tille
Dear Hyun, thanks a lot for the very quick response. I will link in the Debian copyright file to this mail which is publicly archived in the mailing list archive. I hope that will be acceptable for the Debian ftpmaster. Kind regards Andreas. On Wed, Mar 20, 2019 at 09:29:00AM -0400,

Re: request for r-cran packages

2019-03-20 Thread Steffen Möller
On 20.03.19 13:48, Andreas Tille wrote: Hi Tony, On Wed, Mar 20, 2019 at 12:25:32PM +0100, Tony Travis wrote: Yes, that would be great if you're willing, but I would struggle to do it on my own despite you explaining to me several times what to do... Its a pleasure for me to look at this

PIQUE packaging (Was: request for r-cran packages)

2019-03-20 Thread Andreas Tille
Hi Tony, On Wed, Mar 20, 2019 at 01:48:05PM +0100, Andreas Tille wrote: > > Yes, that would be great if you're willing, but I would struggle to do it on > > my own despite you explaining to me several times what to do... > > Its a pleasure for me to look at this once you fixed > >

Re: Debian-Med packaging of EMMAX

2019-03-20 Thread Andreas Tille
Hi again, I stumbled upon some other software that needs emmax which brought to my attention that there was no final answer to the license question: Did you decided for a free license for EMMAX which I might have missed? Kind regards Andreas. On Sun, Feb 11, 2018 at 04:27:45PM +0100,

Re: request for r-cran packages

2019-03-20 Thread Andreas Tille
Hi Tony, On Wed, Mar 20, 2019 at 12:25:32PM +0100, Tony Travis wrote: > > Yes, that would be great if you're willing, but I would struggle to do it on > my own despite you explaining to me several times what to do... Its a pleasure for me to look at this once you fixed

Re: request for r-cran packages

2019-03-20 Thread Tony Travis
On 20/03/2019 11:59, Andreas Tille wrote: Hi Tony, On Tue, Mar 19, 2019 at 10:02:17PM +0100, Tony Travis wrote: I need three r-cran packages that are not in the Debian-Med-based Ubuntu archive for my PIQUE GWAS pipeline: https://github.com/tony-travis/PIQUE Thanks for the feature request

Re: request for r-cran packages

2019-03-20 Thread Andreas Tille
Hi Tony, On Tue, Mar 19, 2019 at 10:02:17PM +0100, Tony Travis wrote: > I need three r-cran packages that are not in the Debian-Med-based Ubuntu > archive for my PIQUE GWAS pipeline: > > > https://github.com/tony-travis/PIQUE Thanks for the feature request (BTW, should we try to package PIQUE

Re: Outreachy current

2019-03-20 Thread Andreas Tille
Hi Liubov, thanks a lot for your comments. I have no idea whether there is some point in making you an official co-mentor but if you see some advantage for you in adding you officially that would be perfectly fine for me. On Wed, Mar 20, 2019 at 10:43:43AM +0100, Liubov Chuprikova wrote: > But

Re: Outreachy current

2019-03-20 Thread Liubov Chuprikova
Hi Saira, I am glad to know there is a new potential Outreachy student! :-) On Tue, 19 Mar 2019 at 09:13, Andreas Tille wrote: > On Mon, Mar 18, 2019 at 11:11:11PM +, Saira Hussain wrote: > > > What's the best way to use autopkgtest locally to emulate the test? As I > currently > > only