[med-svn] [SCM] mia branch, master, updated. upstream/2.0.7-64-gb612b58

2013-02-27 Thread Gert Wollny
The following commit has been merged in the master branch: commit bc86573a958ede362654739bf2c487ff87bf8a7b Author: Gert Wollny gw.foss...@gmail.com Date: Mon Feb 25 17:05:45 2013 +0100 update strip target diff --git a/debian/run_strip b/debian/run_strip index e1d2626..23761ac 100755 ---

[med-svn] [SCM] mia branch, master, updated. upstream/2.0.7-64-gb612b58

2013-02-27 Thread Gert Wollny
The following commit has been merged in the master branch: commit b19ec537e0a267ac704b12ecb9907a84e5f341fb Merge: 488d577ead9f0e3dacea2f7b2fb45f30adc98cd1 327d539aced47bb7f442b23ce75a57192ee20efb Author: Gert Wollny gw.foss...@gmail.com Date: Mon Feb 25 16:09:38 2013 +0100 Merge tag

[med-svn] [SCM] mia branch, master, updated. upstream/2.0.7-64-gb612b58

2013-02-27 Thread Gert Wollny
The following commit has been merged in the master branch: commit b6ab710dc65c84bce1ff4cb275f48af7e5d1eb41 Author: Gert Wollny gw.foss...@gmail.com Date: Mon Feb 25 16:44:20 2013 +0100 change name of library package according to new soname diff --git a/debian/control b/debian/control index

[med-svn] [SCM] mia branch, master, updated. upstream/2.0.7-64-gb612b58

2013-02-27 Thread Gert Wollny
The following commit has been merged in the master branch: commit a60c0e1e981804b76a31d318746cf1208a93411a Author: Gert Wollny gw.foss...@gmail.com Date: Mon Feb 25 17:30:31 2013 +0100 update lintian for the new package name diff --git a/debian/libmia-2.0-8.lintian-overrides

[med-svn] [SCM] mia branch, master, updated. upstream/2.0.7-64-gb612b58

2013-02-27 Thread Gert Wollny
The following commit has been merged in the master branch: commit c6bc89f3aba8a411658308d2b8f7ba4d9e5db95f Author: Gert Wollny gw.foss...@gmail.com Date: Mon Feb 25 18:00:52 2013 +0100 fix manpage lintian error diff --git a/src/2dmyoset-all2one-nonrigid.cc

[med-svn] [SCM] mia branch, master, updated. upstream/2.0.7-64-gb612b58

2013-02-27 Thread Gert Wollny
The following commit has been merged in the master branch: commit efb32cdc44837ff3473776fc8fc791d2bf597783 Author: Gert Wollny gw.foss...@gmail.com Date: Mon Feb 25 16:14:31 2013 +0100 remove obsolete patches and options and bump version diff --git a/debian/changelog b/debian/changelog

[med-svn] [SCM] mia branch, master, updated. upstream/2.0.7-64-gb612b58

2013-02-27 Thread Gert Wollny
The following commit has been merged in the master branch: commit c917ded44bbf751aae0b28c0fb6329c734898130 Author: Gert Wollny gw.foss...@gmail.com Date: Mon Feb 25 18:08:47 2013 +0100 update patch description diff --git a/debian/patches/2dmyoset-manpage-lintian-fix.patch

[med-svn] [SCM] mia branch, master, updated. upstream/2.0.7-64-gb612b58

2013-02-27 Thread Gert Wollny
The following commit has been merged in the master branch: commit 8ef661f4582840182f76484e739f512bbebfdce3 Author: Gert Wollny gw.foss...@gmail.com Date: Tue Feb 26 13:35:28 2013 +0100 rename patch for sanity diff --git a/debian/patches/2dmyoset-manpage-lintian-fix.patch

[med-svn] [SCM] mia branch, master, updated. upstream/2.0.7-64-gb612b58

2013-02-27 Thread Gert Wollny
The following commit has been merged in the master branch: commit 9462fd022776c322183c51a81d85358cf499b814 Author: Gert Wollny gw.foss...@gmail.com Date: Mon Feb 25 18:05:22 2013 +0100 update help to avoid lintian warning diff --git a/debian/patches/2dmyoset-manpage-lintian-fix.patch

[med-svn] [SCM] mia branch, master, updated. upstream/2.0.7-64-gb612b58

2013-02-27 Thread Gert Wollny
The following commit has been merged in the master branch: commit fa0eebc9a7c54988c0111c5164e32de4d40b5878 Author: Gert Wollny gw.foss...@gmail.com Date: Tue Feb 26 16:34:22 2013 +0100 add patch to let tests run through on powerpc 32 bit diff --git a/debian/libmia-2.0-8.install

[med-svn] [SCM] mia branch, master, updated. upstream/2.0.7-64-gb612b58

2013-02-27 Thread Gert Wollny
The following commit has been merged in the master branch: commit 6021b8cf42c9f274af0f692b1ef29ddc9e603352 Merge: fa0eebc9a7c54988c0111c5164e32de4d40b5878 0c46b31df03c207c0d21441c1d80ae3c3f6e50c2 Author: Gert Wollny gw.foss...@gmail.com Date: Tue Feb 26 16:40:18 2013 +0100 Merge branch

[med-svn] [SCM] mia branch, master, updated. upstream/2.0.7-64-gb612b58

2013-02-27 Thread Gert Wollny
The following commit has been merged in the master branch: commit 2ba251f25a6c1f70444bddb29bce21194a32be91 Author: Gert Wollny gw.foss...@gmail.com Date: Tue Feb 26 13:35:28 2013 +0100 rename patch for sanity diff --git a/debian/patches/2dmyoset-manpage-lintian-fix.patch

[med-svn] [SCM] mia branch, master, updated. upstream/2.0.7-64-gb612b58

2013-02-27 Thread Gert Wollny
The following commit has been merged in the master branch: commit 6e2e3b39e1f96a93e3578eeca8c28209abc753b4 Author: Gert Wollny gw.foss...@gmail.com Date: Mon Feb 25 18:10:49 2013 +0100 apply the patch diff --git a/src/2dmyoset-all2one-nonrigid.cc b/src/2dmyoset-all2one-nonrigid.cc index

[med-svn] [SCM] mia branch, master, updated. upstream/2.0.7-64-gb612b58

2013-02-27 Thread Gert Wollny
The following commit has been merged in the master branch: commit 388362f77e759fd55b5fcf5c5391cd11fbc094f1 Author: Gert Wollny gw.foss...@gmail.com Date: Tue Feb 26 16:46:25 2013 +0100 fix tests for values close to zero diff --git a/mia/3d/filter/test_scale.cc b/mia/3d/filter/test_scale.cc

[med-svn] [SCM] mia branch, master, updated. upstream/2.0.7-64-gb612b58

2013-02-27 Thread Gert Wollny
The following commit has been merged in the master branch: commit 0feea13bcb53192211982f3264ab5c8281ac3650 Author: Gert Wollny gw.foss...@gmail.com Date: Tue Feb 26 16:56:40 2013 +0100 add that patch diff --git a/mia/3d/filter/test_scale.cc b/mia/3d/filter/test_scale.cc index

[med-svn] [SCM] mia branch, master, updated. upstream/2.0.7-64-gb612b58

2013-02-27 Thread Gert Wollny
The following commit has been merged in the master branch: commit 0ad82d1b041cf2920843d3bc65cbda9fb8ff3e9a Author: Gert Wollny gw.foss...@gmail.com Date: Tue Feb 26 16:55:23 2013 +0100 update patch description diff --git a/debian/patches/03_fix_test_close_to_zero.patch

[med-svn] [SCM] mia branch, master, updated. upstream/2.0.7-64-gb612b58

2013-02-27 Thread Gert Wollny
The following commit has been merged in the master branch: commit 9935eb26955c5dae63b30bb255343fb6fee8c3b8 Author: Gert Wollny gw.foss...@gmail.com Date: Tue Feb 26 16:45:13 2013 +0100 Revert to 8ef661f458284 diff --git a/debian/libmia-2.0-8.install b/debian/libmia-2.0-8.install new file

[med-svn] [SCM] mia branch, master, updated. upstream/2.0.7-64-gb612b58

2013-02-27 Thread Gert Wollny
The following commit has been merged in the master branch: commit ab871d14b29fa3cced186af084a83b13beaad1f6 Author: Gert Wollny gw.foss...@gmail.com Date: Tue Feb 26 17:15:47 2013 +0100 once again re-apply the patch ... diff --git a/gsl++/test_multimin.cc b/gsl++/test_multimin.cc index

[med-svn] [SCM] mia branch, master, updated. upstream/2.0.7-64-gb612b58

2013-02-27 Thread Gert Wollny
The following commit has been merged in the master branch: commit b612b58cbe0697ab84bcc862014a6e9c719a61a0 Author: Gert Wollny gw.foss...@gmail.com Date: Tue Feb 26 17:46:30 2013 +0100 change patch to break line diff --git a/debian/patches/02_2dmyoset-manpage-lintian-fix.patch

[med-svn] [SCM] mia branch, pristine-tar, updated. 3ba145bf4e633c961ad46e5c2906f11cf45b6700

2013-02-27 Thread Gert Wollny
The following commit has been merged in the pristine-tar branch: commit 9d1d99619c354f482411e22a4ac7f7d1034e0c17 Author: Gert Wollny gw.foss...@gmail.com Date: Mon Feb 25 16:08:56 2013 +0100 pristine-tar data for mia_2.0.8.orig.tar.xz diff --git a/mia_2.0.8.orig.tar.xz.delta

[med-svn] [SCM] mia branch, pristine-tar, updated. 3ba145bf4e633c961ad46e5c2906f11cf45b6700

2013-02-27 Thread Gert Wollny
The following commit has been merged in the pristine-tar branch: commit 3ba145bf4e633c961ad46e5c2906f11cf45b6700 Author: Gert Wollny gw.foss...@gmail.com Date: Mon Feb 25 16:09:37 2013 +0100 pristine-tar data for mia_2.0.8.orig.tar.xz diff --git a/mia_2.0.8.orig.tar.xz.delta

[med-svn] [SCM] mia branch, master, updated. upstream/2.0.7-64-gb612b58

2013-02-27 Thread Gert Wollny
The following commit has been merged in the master branch: commit 0e091d35feec696577c06675a769c608be54a87e Author: Gert Wollny gw.foss...@gmail.com Date: Tue Feb 26 17:10:18 2013 +0100 correct the index type in the tests to avoid ambiguous function warning diff --git

[med-svn] [SCM] mia branch, master, updated. upstream/2.0.7-64-gb612b58

2013-02-27 Thread Gert Wollny
The following commit has been merged in the master branch: commit 00732a4c8dfc9f3c8c891d5900fba922dfc55a0d Author: Gert Wollny gw.foss...@gmail.com Date: Tue Feb 26 17:14:45 2013 +0100 add patch to debian tree diff --git a/debian/patches/03_fix_test_close_to_zero.patch

[med-svn] [SCM] mia branch, pristine-tar, updated. 3ba145bf4e633c961ad46e5c2906f11cf45b6700

2013-02-27 Thread Gert Wollny
The following commit has been merged in the pristine-tar branch: commit 6a01773e53af8fbecc4b4521d8f07c26a9fc1cea Author: Gert Wollny gw.foss...@gmail.com Date: Mon Feb 25 12:02:21 2013 +0100 pristine-tar data for mia_2.0.8.orig.tar.xz diff --git a/mia_2.0.8.orig.tar.xz.delta

[med-svn] [SCM] mia branch, master, updated. upstream/2.0.7-64-gb612b58

2013-02-27 Thread Gert Wollny
The following commit has been merged in the master branch: commit d2d9923b70e988cddbd10c77c5f9b2288b9960c7 Author: Gert Wollny gw.foss...@gmail.com Date: Tue Feb 26 17:45:09 2013 +0100 change patch to break line diff --git a/debian/patches/02_2dmyoset-manpage-lintian-fix.patch

[med-svn] [SCM] mia branch, master, updated. upstream/2.0.7-64-gb612b58

2013-02-27 Thread Gert Wollny
The following commit has been merged in the master branch: commit 0c46b31df03c207c0d21441c1d80ae3c3f6e50c2 Author: Gert Wollny gw.foss...@gmail.com Date: Tue Feb 26 16:37:42 2013 +0100 add patch to pass tests on powerpc for values close to zero diff --git a/mia/3d/filter/test_scale.cc

[med-svn] [SCM] mia annotated tag, upstream/2.0.8, created. upstream/2.0.8

2013-02-27 Thread Gert Wollny
The annotated tag, upstream/2.0.8 has been created at 2318c57321bfdedeed3e2775ea0a3698eb7e2e27 (tag) tagging 327d539aced47bb7f442b23ce75a57192ee20efb (commit) replaces upstream/2.0.7 tagged by Gert Wollny on Mon Feb 25 16:09:38 2013 +0100 - Shortlog

[med-svn] [SCM] mialmpick branch, master, updated. upstream/0.2.6-16-ga0932bf

2013-02-27 Thread Gert Wollny
The following commit has been merged in the master branch: commit 79d4b8044258b0ba97aa5fa34ae8b1121b6e9c1b Author: Gert Wollny gw.foss...@gmail.com Date: Mon Feb 18 13:29:59 2013 +0100 add missing license information for src/trackball.* diff --git a/debian/copyright b/debian/copyright

[med-svn] [SCM] mialmpick branch, master, updated. upstream/0.2.6-16-ga0932bf

2013-02-27 Thread Gert Wollny
The following commit has been merged in the master branch: commit 96f050025e31b4aa8b8ae1874ea9d7a116aec6b8 Author: Gert Wollny gw.foss...@gmail.com Date: Wed Feb 27 16:16:53 2013 +0100 update changelog to new upstream version diff --git a/debian/changelog b/debian/changelog index

[med-svn] [SCM] mialmpick branch, master, updated. upstream/0.2.6-16-ga0932bf

2013-02-27 Thread Gert Wollny
The following commit has been merged in the master branch: commit a0932bf5bdc3d0fa2d735348313cf2ba3b36fe04 Author: Gert Wollny gw.foss...@gmail.com Date: Wed Feb 27 16:23:25 2013 +0100 update copyright to silence lintian diff --git a/debian/copyright b/debian/copyright index

[med-svn] [SCM] mialmpick branch, master, updated. upstream/0.2.6-16-ga0932bf

2013-02-27 Thread Gert Wollny
The following commit has been merged in the master branch: commit ef7426eac41534a7d79003084f6403c20f3b7f9f Author: Gert Wollny gw.foss...@gmail.com Date: Wed Feb 27 16:14:24 2013 +0100 add ignore files diff --git a/.gitignore b/.gitignore new file mode 100644 index 000..ed46df0 ---

[med-svn] [SCM] mialmpick branch, master, updated. upstream/0.2.6-16-ga0932bf

2013-02-27 Thread Gert Wollny
The following commit has been merged in the master branch: commit 01e11fedfcebdea61ab89b966ccb9b7ea85cf7fb Merge: ef7426eac41534a7d79003084f6403c20f3b7f9f 630275e832a36267f96159f499f83265658e2514 Author: Gert Wollny gw.foss...@gmail.com Date: Wed Feb 27 16:14:40 2013 +0100 Merge tag

[med-svn] [SCM] mialmpick branch, pristine-tar, updated. ce4f1897f0840eaef4381af3ce0346c7b6b94f64

2013-02-27 Thread Gert Wollny
The following commit has been merged in the pristine-tar branch: commit ce4f1897f0840eaef4381af3ce0346c7b6b94f64 Author: Gert Wollny gw.foss...@gmail.com Date: Wed Feb 27 16:14:39 2013 +0100 pristine-tar data for mialmpick_0.2.7.orig.tar.xz diff --git a/mialmpick_0.2.7.orig.tar.xz.delta

[med-svn] [SCM] mialmpick branch, master, updated. upstream/0.2.6-16-ga0932bf

2013-02-27 Thread Gert Wollny
The following commit has been merged in the master branch: commit 218107f7a35cadec8ec3e3437e5c09bdf26656fd Author: Gert Wollny gw.foss...@gmail.com Date: Mon Feb 18 13:33:36 2013 +0100 correct copyright year diff --git a/debian/copyright b/debian/copyright index bbdc192..4216101 100644 ---

[med-svn] [SCM] mialmpick annotated tag, upstream/0.2.7, created. upstream/0.2.7

2013-02-27 Thread Gert Wollny
The annotated tag, upstream/0.2.7 has been created at 8987dfda4af5abe720ae4f14354ed551fe7c4ec1 (tag) tagging 630275e832a36267f96159f499f83265658e2514 (commit) replaces upstream/0.2.6 tagged by Gert Wollny on Wed Feb 27 16:14:39 2013 +0100 - Shortlog

[med-svn] [SCM] bowtie2 branch, master, updated. upstream/2.0.6-59-g3df4b1c

2013-02-27 Thread Alexandre Mestiashvili
The following commit has been merged in the master branch: commit 986fa9e86dbfecd69812eb7efdd0768554497eb0 Author: Alexandre Mestiashvili a...@biotec.tu-dresden.de Date: Wed Feb 27 16:03:47 2013 +0100 updated changelog diff --git a/debian/changelog b/debian/changelog index 4f02cf7..2234b23

[med-svn] [SCM] bowtie2 branch, master, updated. upstream/2.0.6-59-g3df4b1c

2013-02-27 Thread Alexandre Mestiashvili
The following commit has been merged in the master branch: commit 8a477f0ddda34e76193794454cff739b250a873d Merge: e6c50930c7a7c611e34f1577c7966ffb7e3111e7 fa595dac17e76abe2d4bb9d19b00b2cecef7c438 Author: Alexandre Mestiashvili a...@biotec.tu-dresden.de Date: Wed Feb 27 15:58:05 2013 +0100

[med-svn] [SCM] bowtie2 branch, master, updated. upstream/2.0.6-59-g3df4b1c

2013-02-27 Thread Alexandre Mestiashvili
The following commit has been merged in the master branch: commit e6c50930c7a7c611e34f1577c7966ffb7e3111e7 Author: Alexandre Mestiashvili a...@biotec.tu-dresden.de Date: Wed Feb 27 14:22:22 2013 +0100 - d/help2man-wrapper: as kindly suggested by Andreas Tille as workaround fot

[med-svn] [SCM] bowtie2 branch, pristine-tar, updated. 68494aa9c511bbbee22d0b436f0e4141531cde66

2013-02-27 Thread Alexandre Mestiashvili
The following commit has been merged in the pristine-tar branch: commit 68494aa9c511bbbee22d0b436f0e4141531cde66 Author: Alexandre Mestiashvili a...@biotec.tu-dresden.de Date: Wed Feb 27 15:58:05 2013 +0100 pristine-tar data for bowtie2_2.1.0.orig.tar.gz diff --git

[med-svn] [SCM] bowtie2 branch, master, updated. upstream/2.0.6-59-g3df4b1c

2013-02-27 Thread Alexandre Mestiashvili
The following commit has been merged in the master branch: commit fc164631e4c23cb0b595dc3df2368fcd1980f1fb Author: Alexandre Mestiashvili a...@biotec.tu-dresden.de Date: Wed Feb 27 16:07:13 2013 +0100 updated changelog diff --git a/debian/changelog b/debian/changelog index 2234b23..4de8c3c

[med-svn] [SCM] bowtie2 branch, master, updated. upstream/2.0.6-59-g3df4b1c

2013-02-27 Thread Alexandre Mestiashvili
The following commit has been merged in the master branch: commit 3df4b1c236e64261cb5b592b3555ebb70cb3e657 Author: Alexandre Mestiashvili a...@biotec.tu-dresden.de Date: Wed Feb 27 16:19:57 2013 +0100 refreshed patches diff --git a/debian/changelog b/debian/changelog index 4de8c3c..65ad59c

[med-svn] [SCM] bowtie2 annotated tag, upstream/2.1.0, created. upstream/2.1.0

2013-02-27 Thread Alexandre Mestiashvili
The annotated tag, upstream/2.1.0 has been created at ef9ec867a7b34885afac43817416262e5f053cbb (tag) tagging fa595dac17e76abe2d4bb9d19b00b2cecef7c438 (commit) replaces upstream/2.0.6 tagged by Alexandre Mestiashvili on Wed Feb 27 15:58:05 2013 +0100 - Shortlog

[med-svn] [Debian Wiki] Update of DebianMed/PredictProtein by LaszloKajan

2013-02-27 Thread Debian Wiki
Dear Wiki user, You have subscribed to a wiki page or wiki category on Debian Wiki for change notification. The DebianMed/PredictProtein page has been changed by LaszloKajan: http://wiki.debian.org/DebianMed/PredictProtein Comment: Initial version of page New page: #language en

[med-svn] [Debian Wiki] Update of DebianMed/PredictProtein by LaszloKajan

2013-02-27 Thread Debian Wiki
Dear Wiki user, You have subscribed to a wiki page or wiki category on Debian Wiki for change notification. The DebianMed/PredictProtein page has been changed by LaszloKajan: http://wiki.debian.org/DebianMed/PredictProtein?action=diffrev1=1rev2=2 Comment: conf added === Databases ===

[med-svn] [Debian Wiki] Update of DebianMed/PredictProtein by LaszloKajan

2013-02-27 Thread Debian Wiki
Dear Wiki user, You have subscribed to a wiki page or wiki category on Debian Wiki for change notification. The DebianMed/PredictProtein page has been changed by LaszloKajan: http://wiki.debian.org/DebianMed/PredictProtein?action=diffrev1=2rev2=3 Comment: added test run command ==

[med-svn] [SCM] mialmpick branch, master, updated. upstream/0.2.7-16-g522e4e0

2013-02-27 Thread Gert Wollny
The following commit has been merged in the master branch: commit 522e4e0f6624e4739a228d33a79ae066c0e9c7d2 Author: Gert Wollny gw.foss...@gmail.com Date: Thu Feb 28 02:05:00 2013 +0100 set dist to unreleased diff --git a/debian/changelog b/debian/changelog index 907e688..45328a1 100644 ---