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from d6dea21 Version 2.3.2.
new 811e757 Fixed covariant return error on 32bits arch.
The 1 revisions listed above as "new" are entirely
100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,3 +1,10 @@
+libbpp-phyl (2.3.2-2) UNRELEASED; urgency=medium
+
+ [ Julien Dutheil ]
+ * Fixed covariant return type on 32bits arch.
+
+ -- Julien Dutheil Fri, 09 Feb 2018 09:10:11
+0200
+
libbpp-phyl (2.3.2-1) UNRELEASED; urgency=medium
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The 1 rev
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commit a6b4041022f44541796347bf23ada1b06546b783
Author: Julien Y. Dutheil
Date: Wed Feb 7 11:16:05 2018 +0100
pristine-tar data for bppsuite_2.3
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commit 404ec1f2a1afef65a4bae7d5cf684310f353b539
Merge: ed4acd9 f51eb03
Author: Julien Y. Dutheil
Date: Wed Feb 7 11:16:05 2018 +0100
Update upstream s
deletions(-)
diff --git a/debian/changelog b/debian/changelog
index 8b7e854..4e6f7f2 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,8 +1,13 @@
-bppsuite (2.3.1-5) UNRELEASED; urgency=medium
+bppsuite (2.3.2-1) UNRELEASED; urgency=medium
+ [ Julien Dutheil ]
+ * New upstream version
b/ChangeLog
index 69e7267..9245387 100644
--- a/ChangeLog
+++ b/ChangeLog
@@ -1,3 +1,6 @@
+06/11/17 Julien Dutheil
+* Added estimation of kappa to bppPopStats + bugs fixed
+
06/06/17 -*- Version 2.3.1 -*-
10/05/17 -*- Version 2.3.0 -*-
diff --git a/Examples/PopStats/PopStats.bpp b/Examples
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commit e517f2a8775b7dd3c05c0c45e362783b1b515ee1
Author: Julien Y. Dutheil
Date: Wed Feb 7 10:52:25 2018 +0100
pristine-tar data for lib
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from f132fc7 pristine-tar data for libbpp-phyl-omics_2.3.1.orig.tar.gz
new e517f2a pristine-tar data for libbpp-phyl-omics_2
+++ b/debian/changelog
@@ -1,3 +1,9 @@
+libbpp-phyl-omics (2.3.2-1) UNRELEASED; urgency=medium
+
+ * Standards-Version: 4.1.2 (no changes needed)
+
+ -- Julien Dutheil Wed, 07 Feb 2018 10:53:10
+0200
+
libbpp-phyl-omics (2.3.1-5) unstable; urgency=medium
* Rebuild with gcc-7
diff --git a
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at 953d4ce (tag)
tagging b2bb96c4cb0b793d9ddc5110fa523d9a5a42bfcd (commit)
replaces upstream/2.3.1
tagged by Julie
-*-
+
10/05/17 -*- Version 2.3.0. -*-
26/04/16 Julien Dutheil
diff --git a/Doxyfile b/Doxyfile
index 358eea8..9bb99ce 100644
--- a/Doxyfile
+++ b/Doxyfile
@@ -1,4 +1,4 @@
-# Doxyfile 1.8.11
+# Doxyfile 1.8.7
# This file describes the settings to be used by the documentation system
# doxygen
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commit a849d98e228a4ed051e919e4678b8cd1e05a5150
Merge: 95618be b2bb96c
Author: Julien Y. Dutheil
Date: Wed Feb 7 10:52:25 2018 +0100
Update u
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from f6eee0f New upstream version 2.3.1
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new a849d98 Update upst
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commit 62e14f19022203e513e15cc930fa34eac5fd2b1f
Author: Julien Y. Dutheil
Date: Wed Feb 7 09:39:34 2018 +0100
pristine-tar data for libb
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tagged by Julien
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commit 77dd35b938cc84b0ccd3ab10d453ae4231588f95
Merge: 0ef4dee 5a876b5
Author: Julien Y. Dutheil
Date: Wed Feb 7 09:39:34 2018 +0100
Update up
/debian/changelog
@@ -1,3 +1,10 @@
+libbpp-seq-omics (2.3.2-1) UNRELEASED; urgency=medium
+
+ [ Julien Dutheil ]
+ * Standards-Version: 4.1.2
+
+ -- Julien Dutheil Wed, 07 Feb 2018 10:45:02
+0200
+
libbpp-seq-omics (2.3.1-5) unstable; urgency=medium
[ Julien Dutheil ]
diff --git a/debian
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from fdca0e3 pristine-tar data for libbpp-seq-omics_2.3.1.orig.tar.gz
new 62e14f1 pristine-tar data for libbpp-seq-omics_2.3.
---
ChangeLog | 2 ++
1 file changed, 2 insertions(+)
diff --git a/ChangeLog b/ChangeLog
index 92ca8b4..20162a9 100644
--- a/ChangeLog
+++ b/ChangeLog
@@ -1,3 +1,5 @@
+10/12/17 -*- Version 2.3.2 -*-
+
10/05/17 -*- Version 2.3.0 -*-
03/04/17 Julien Dutheil
--
Alioth's /usr/local/bin/git-c
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commit 92752d5b3bb7ada2b6ba3cb95d93dd0238bfde99
Author: Julien Y. Dutheil
Date: Wed Feb 7 09:35:11 2018 +0100
Fixed dh-libs issue.
---
debian/rules
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from dbdf091 dh-shlibs override (UNTESTED)
new 92752d5 Fixed dh-libs issue.
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The
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commit 6c44a83fa59ebca9e287704d35d8412f06061ad0
Author: Julien Y. Dutheil
Date: Tue Feb 6 15:34:28 2018 +0100
pristine-tar data for libbpp-raa
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commit 84bc96c0ff249b77a2b3fafabffb86f3bc881813
Author: Julien Y. Dutheil
Date: Tue Feb 6 13:44:19 2018 +0100
pristine-tar data for libbpp-
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replaces upstream/2.3.1
tagged by Julien Y. D
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commit 63aac27ffb80f96f5ac380302d3107a085a19b81
Author: Julien Y. Dutheil
Date: Mon Feb 5 20:55:43 2018 +0100
pristine-tar data for libbpp-ph
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commit a573f31281adb61f128f4ab9cc9c479df85adbab
Author: Julien Y. Dutheil
Date: Mon Feb 5 17:34:26 2018 +0100
pristine-tar data for libbpp-seq
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replaces upstream/2.3.1
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The
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commit 7b9c545a98e2b356a3a2b909b8335487b6721cf4
Author: Julien Y. Dutheil
Date: Mon Feb 5 13:13:08 2018 +0100
pristine-tar data for libbpp-co
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from bcf64a5 pristine-tar data for libbpp-core_2.3.1.orig.tar.gz
new 7b9c545 pristine-tar data for libbpp-core_2.3.2.orig.tar.gz
)
# CMake package
set (cmake-package-location ${CMAKE_INSTALL_LIBDIR}/cmake/${PROJECT_NAME})
diff --git a/ChangeLog b/ChangeLog
index f8939a7..4949278 100644
--- a/ChangeLog
+++ b/ChangeLog
@@ -1,3 +1,6 @@
+13/09/17 Julien Dutheil
+* Ported to Qt5.
+
06/06/17 -*- Version 2.3.1 -*-
10/05/17
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jdutheil-guest pushed a commit to branch master
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commit 7a15e3c9479b7772e850ca2ed3aa7cb6e32aeea4
Merge: cf48f3e d4a6551
Author: Julien Y. Dutheil
Date: Tue Feb 6 21:43:27 2018 +0100
Update upstream
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jdutheil-guest pushed a change to branch master
in repository libbpp-qt.
from cf48f3e Upload to unstable
new d4a6551 New upstream version 2.3.2
new 7a15e3c Update upstream source from tag 'upstream/2.3
@@
+libbpp-qt (2.3.2-1) UNRELEASED; urgency=medium
+
+ [ Julien Dutheil ]
+ * Standards-Version: 4.1.2 (no changes needed)
+ * Builds against Qt5.
+
+ -- Andreas Tille Tue, 06 Feb 2018 15:44:23 +0200
+
libbpp-qt (2.3.1-4) unstable; urgency=medium
[ Julien Dutheil ]
diff --git a/debian/cont
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jdutheil-guest pushed a change to branch master
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from cdadcb2 Merge branch 'master' of
ssh://git.debian.org/git/debian-med/libbpp-raa
new 70a2715 New upstream version 2.3.2
new
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commit 70a2715e5b80b12e0e001467cc05a737a3dae31e
Author: Julien Y. Dutheil
Date: Tue Feb 6 15:34:27 2018 +0100
New upstream version 2.3.2
---
Doxyfi
/changelog
@@ -1,9 +1,8 @@
-libbpp-raa (2.3.1-5) UNRELEASED; urgency=medium
+libbpp-raa (2.3.2-1) UNRELEASED; urgency=medium
- * Non-maintainer upload.
* Does not override debian C and CXX flags anymore.
- -- Julien Dutheil Wed, 09 Aug 2017 23:10:01
+0200
+ -- Julien Dutheil Tue, 06 Feb 2018
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jdutheil-guest pushed a change to branch master
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from 2f3c630 Standards-Version: 4.1.0
new f058b0c New upstream version 2.3.2
new 1a5578c Update upstream source from tag 'up
---
ChangeLog | 3 +++
src/Bpp/PopGen/SequenceStatistics.cpp | 4 ++--
2 files changed, 5 insertions(+), 2 deletions(-)
diff --git a/ChangeLog b/ChangeLog
index dbf640e..b910c54 100644
--- a/ChangeLog
+++ b/ChangeLog
@@ -1,3 +1,6 @@
+24/11/17 Julien Dutheil
+* Fixed error in
index 965409f..0874933 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,3 +1,9 @@
+libbpp-popgen (2.3.2-1) UNRELEASED; urgency=medium
+
+ * Standards-Version: 4.1.2
+
+ -- Julien Dutheil Tue, 06 Feb 2018 13:46:49
+0200
+
libbpp-popgen (2.3.1-5) unstable; urgency=medium
* Rebuild
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in repository libbpp-popgen.
commit 1a5578cf49d7de8c7e8f672a9251176def682769
Merge: 2f3c630 f058b0c
Author: Julien Y. Dutheil
Date: Tue Feb 6 13:44:19 2018 +0100
Update upstr
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jdutheil-guest pushed a commit to branch master
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commit 6f35a104db31d20caae674941602454f38ca6e9b
Merge: c8a90af 7e00775
Author: Julien Y. Dutheil
Date: Mon Feb 5 20:55:43 2018 +0100
Update upstrea
+
+ [ Julien Dutheil ]
+ * Standards-Version: 4.1.2
+
+ -- Julien Dutheil Mon, 05 Feb 2018 20:59:41
+0200
+
libbpp-phyl (2.3.1-10) unstable; urgency=medium
[ Julien Dutheil ]
diff --git a/debian/control b/debian/control
index 39df795..5bea196 100644
--- a/debian/control
+++ b/debian/control
@@ -7,8
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jdutheil-guest pushed a change to branch master
in repository libbpp-phyl.
from c8a90af DEP3
new 7e00775 New upstream version 2.3.2
new 6f35a10 Update upstream source from tag 'upstream/2.3.2'
n
: 4.0.1
+
+ -- Julien Dutheil Mon, 05 Feb 2018 17:36:38
+0200
+
libbpp-seq (2.3.1-8) unstable; urgency=medium
* Rebuild with gcc-7
diff --git a/debian/control b/debian/control
index 313aff8..b4e076f 100644
--- a/debian/control
+++ b/debian/control
@@ -7,7 +7,7 @@ Priority: optional
Build
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commit a1a1c1c18560227422f8911ea2135fb340091323
Author: Julien Y. Dutheil
Date: Mon Feb 5 17:43:49 2018 +0100
Removed deprecated patch.
---
CMakeLi
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jdutheil-guest pushed a commit to branch master
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commit d9b3c89e75663c3b6d06cc62260d4b33d36f3fb8
Merge: 7b9d17b 0dc6a7e
Author: Julien Y. Dutheil
Date: Mon Feb 5 17:34:26 2018 +0100
Update upstream
gcc-7
- * Standards-Version: 4.0.1
+ * Standards-Version: 4.1.2
-- Julien Dutheil Mon, 05 Feb 2018 17:36:38
+0200
diff --git a/debian/control b/debian/control
index b4e076f..de11fbd 100644
--- a/debian/control
+++ b/debian/control
@@ -8,7 +8,7 @@ Build-Depends: debhelper (>= 10)
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jdutheil-guest pushed a change to branch master
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from 7b9d17b Rebuild with gcc-7, Standards-Version: 4.0.1
new 0dc6a7e New upstream version 2.3.2
new d9b3c89 Update upstream so
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jdutheil-guest pushed a change to branch master
in repository libbpp-core.
from 1d8dcff Removed unneeded patch.
new 8e18bee Fixed lintian warnings.
The 1 revisions listed above as "new" are entirely new to this
| 6 ++
1 file changed, 6 insertions(+)
diff --git a/debian/changelog b/debian/changelog
index cbaf634..62d15f8 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,3 +1,9 @@
+libbpp-core (2.3.2-1) UNRELEASED; urgency=medium
+
+ * Version 2.3.2.
+
+ -- Julien Dutheil Mon, 05 Feb 2018
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from 7a94d80 Added patch for gcc7.
new 30596ab New upstream version 2.3.2
new 813798f Update upstream source from tag 'upstrea
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from fd1c288 Rebuild with gcc-7, Standards-Version: 4.0.1
new 0060bbc Fixed cxxflags patch.
new 7a94d80 Added patch for gcc7.
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commit 0060bbc04bf1218bfc8b813ea6b38847e89f038d
Author: Julien Y. Dutheil
Date: Wed Jan 3 12:04:56 2018 +0100
Fixed cxxflags patch.
---
debian/pat
) UNRELEASED; urgency=medium
[ Julien Dutheil ]
* New upstream version
+ * Added debhelper files
- -- Julien Dutheil Sun, 03 Sep 2017 21:09:33
+0200
+
+ -- Julien Dutheil Tue, 12 Sep 2017 14:43:38
+0200
physamp (1.0.2-2) unstable; urgency=medium
diff --git a/debian/physamp.install b
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from 8031131 Version 1.0.3.
new 32f0cf3 Added debhelper files.
The 1 revisions listed above as "new" are entirely new to this
repository an
2017 +0200
- Log -
Version 1.0.0.
Julien Dutheil (1):
Ouput of filtered sequences is now optional.
Julien Y. Dutheil (35):
First version of bppalnoptim.
Added cmake files in doc and man.
Initial fix for
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commit 1fb8db55c8de3025018a5bd4182af6d4c86b7adc
Merge: cc19710 6ac1345
Author: Julien Y. Dutheil
Date: Mon Sep 4 20:13:21 2017 +0200
Merge branch 'up
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Date: Sun Sep 3 21:07:04 2017 +0200
pristine-tar data for physamp_1.0.3
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commit ac60c8fd67e945d71addadd5f6529ca07bfe299d
Merge: 4d9fd32 d817125
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Merge branch
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commit c4f01bd802e1437d953c294ea08eb6f1de6537fb
Author: Julien Y. Dutheil
Date: Thu Jul 20 13:18:29 2017 +0200
pristine-tar data for physamp_1.0.
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commit cc19710929c637685b70aa09bec154c86c1ef674
Author: Julien Y. Dutheil
Date: Sun Sep 3 21:07:04 2017 +0200
New upstream version 1.0.3
---
CMakeList
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new cc19710 New upstream version 1.0.3
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=medium
+
+ [ Julien Dutheil ]
+ * New upstream version
+
+ -- Julien Dutheil Sun, 03 Sep 2017 21:09:33
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+
physamp (1.0.2-2) unstable; urgency=medium
[ Julien Dutheil ]
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commit 1c7079c6702469bc0080d0ac3d2494be50542c9b
Merge: 04010cb cc19710
Author: Julien Y. Dutheil
Date: Sun Sep 3 21:07:04 2017 +0200
Updated version 1.
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from 6798fd6 Updated changelog.
new 0a05c7e Added unforce-cxxflags.patch.
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flags anymore.
- -- Julien Y. Dutheil Sat, 05 Aug 2017
21:15:07 +0200
+ -- Julien Dutheil Wed, 09 Aug 2017 23:25:04
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physamp (1.0.2-1) unstable; urgency=medium
diff --git a/debian/patches/series b/debian/patches/series
new file mode 100644
index 000..af33dcc
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+++ b
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from b8624ab Removed postinst scripts.
new 7b57733 Added unforce-cxxflags.patch.
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/debian/changelog
@@ -1,3 +1,10 @@
+libbpp-qt (2.3.1-4) UNRELEASED; urgency=medium
+
+ * Non-maintainer upload.
+ * Does not override debian cxx flags anymore.
+
+ -- Julien Dutheil Wed, 09 Aug 2017 23:18:52
+0200
+
libbpp-qt (2.3.1-3) unstable; urgency=medium
* Removed postinst scripts
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commit cdadcb21b3494beb1520ef3785efd18657ce9252
Merge: 60448fd a927464
Author: Julien Y. Dutheil
Date: Wed Aug 9 23:13:06 2017 +0200
Merge branch 'm
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ssh://git.debia
..2b6ab54 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,3 +1,10 @@
+libbpp-raa (2.3.1-5) UNRELEASED; urgency=medium
+
+ * Non-maintainer upload.
+ * Does not override debian C and CXX flags anymore.
+
+ -- Julien Dutheil Wed, 09 Aug 2017 23:10:01
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+
libbpp-raa (2.3.1-4) unstable
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jdutheil-guest pushed a change to branch master
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from 9077215 Removed postinst scripts.
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commit 6198d9829cb33fe575eff8d7fc8834702b280640
Author: Julien Y. Dutheil
Date: Wed Aug 9 16:32:21 2017 +0200
Added unforce-cxxflags.patch.
-
+++ b/debian/changelog
@@ -1,3 +1,10 @@
+libbpp-seq-omics (2.3.1-5) UNRELEASED; urgency=medium
+
+ * Non-maintainer upload.
+ * Does not override debian cxx flags anymore.
+
+ -- Julien Dutheil Wed, 09 Aug 2017 16:28:23
+0200
+
libbpp-seq-omics (2.3.1-4) unstable; urgency=medium
* Fixed
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from ee54c4c DEP3
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/debian/changelog
@@ -1,3 +1,9 @@
+libbpp-phyl (2.3.1-10) UNRELEASED; urgency=medium
+
+ * Does not override debian cxx flags anymore.
+
+ -- Julien Dutheil Wed, 09 Aug 2017 16:00:22
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+
libbpp-phyl (2.3.1-9) unstable; urgency=medium
* Further increased time out limit for unit tests
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