Alexandre Mestiashvili pushed to branch master at Debian Med / libzstd
Commits:
b02a2aa7 by Alexandre Mestiashvili at 2018-04-03T09:29:57+00:00
New upstream version 1.3.4+dfsg
- - - - -
075c405a by Alexandre Mestiashvili at 2018-04-03T09:30:00+00:00
Update upstream source from tag 'ups
Alexandre Mestiashvili pushed to branch pristine-tar at Debian Med / libzstd
Commits:
4f7e3826 by Alexandre Mestiashvili at 2018-04-03T09:30:00+00:00
pristine-tar data for libzstd_1.3.4+dfsg.orig.tar.xz
- - - - -
2 changed files:
- + libzstd_1.3.4+dfsg.orig.tar.xz.delta
- + libzstd_1.3.4
Alexandre Mestiashvili pushed to branch upstream at Debian Med / libzstd
Commits:
b02a2aa7 by Alexandre Mestiashvili at 2018-04-03T09:29:57+00:00
New upstream version 1.3.4+dfsg
- - - - -
30 changed files:
- Makefile
- NEWS
- README.md
- + contrib/adaptive-compression/.gitignore
- contrib
Alexandre Mestiashvili pushed to branch master at Debian Med / libzstd
Commits:
fcad1da1 by Alexandre Mestiashvili at 2018-04-03T13:14:11+02:00
Remove indexes from patches
- - - - -
6f4685aa by Alexandre Mestiashvili at 2018-04-03T13:33:40+02:00
Remove Multi-Arch field from -udeb section
Alexandre Mestiashvili pushed new tag upstream/1.3.4+dfsg at Debian Med /
libzstd
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Alexandre Mestiashvili pushed new tag debian/1.3.4+dfsg-1 at Debian Med /
libzstd
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Alexandre Mestiashvili pushed to branch upstream at Debian Med / subread
Commits:
9c61fb61 by Alexandre Mestiashvili at 2018-04-04T16:50:35+00:00
New upstream version 1.6.1+dfsg
- - - - -
18 changed files:
- doc/SubreadUsersGuide.tex
- src/HelperFunctions.c
- src/Makefile.FreeBSD
- src
Alexandre Mestiashvili pushed to branch master at Debian Med / subread
Commits:
9c61fb61 by Alexandre Mestiashvili at 2018-04-04T16:50:35+00:00
New upstream version 1.6.1+dfsg
- - - - -
6cf49bb5 by Alexandre Mestiashvili at 2018-04-04T16:51:19+00:00
Update upstream source from tag 'ups
Alexandre Mestiashvili pushed to branch pristine-tar at Debian Med / subread
Commits:
bcb87575 by Alexandre Mestiashvili at 2018-04-04T16:51:19+00:00
pristine-tar data for subread_1.6.1+dfsg.orig.tar.xz
- - - - -
2 changed files:
- + subread_1.6.1+dfsg.orig.tar.xz.delta
- + subread_1.6.1
Alexandre Mestiashvili pushed new tag debian/1.6.1+dfsg-1 at Debian Med /
subread
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Alexandre Mestiashvili pushed new tag upstream/1.6.1+dfsg at Debian Med /
subread
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Alexandre Mestiashvili pushed to branch pristine-tar at Debian Med / plip
Commits:
b47c2282 by Alexandre Mestiashvili at 2018-04-12T12:05:48+02:00
pristine-tar data for plip_1.4.0~b+dfsg.orig.tar.xz
- - - - -
2 changed files:
- + plip_1.4.0~b+dfsg.orig.tar.xz.delta
- + plip_1.4.0~b
Alexandre Mestiashvili pushed new tag debian/1.4.0_b+dfsg-1 at Debian Med / plip
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Alexandre Mestiashvili pushed new tag upstream/1.4.0_b+dfsg at Debian Med / plip
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Alexandre Mestiashvili pushed to branch master at Debian Med / libzstd
Commits:
7b7d9320 by Alexandre Mestiashvili at 2018-04-17T17:06:04+02:00
Apply patch from Helmut Grohne fixing cross build failure
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1b564a40 by Alexandre Mestiashvili at 2018-04-17T17:09:09+02:00
Update changelog
Alexandre Mestiashvili pushed to branch master at Debian Med / libzstd
Commits:
e9974316 by Alexandre Mestiashvili at 2018-04-18T16:51:24+02:00
Update d/rules, use dh_auto_clean instead of make
- - - - -
1 changed file:
- debian/rules
Changes:
=
debian
Alexandre Mestiashvili pushed to branch master at Debian Med / fasta3
Commits:
0ddc6997 by Alexandre Mestiashvili at 2018-04-19T11:40:11+02:00
Add zlib1g-dev to Build-Depends
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dc5e2b83 by Alexandre Mestiashvili at 2018-04-19T11:48:56+02:00
Apply cme fix dpkg, fixing indentation, secure
Alexandre Mestiashvili pushed to branch master at Debian Med / libzstd
Commits:
8159ace9 by Alexandre Mestiashvili at 2018-04-20T17:26:27+02:00
Properly close bug #895925
- - - - -
1 changed file:
- debian/changelog
Changes:
=
debian/changelog
Alexandre Mestiashvili pushed to branch master at Debian Med / libzstd
Commits:
2599a626 by Alexandre Mestiashvili at 2018-04-24T11:19:03+02:00
Update d/copyright, starting from 1.3.1 patent claim is removed
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1 changed file:
- debian/copyright
Changes
Alexandre Mestiashvili pushed to branch master at Debian Med / libzstd
Commits:
4da28ab6 by Alexandre Mestiashvili at 2018-04-25T10:39:13+02:00
Add comments to unstable symbols in d/libzstd1.symbols
- - - - -
07194aec by Alexandre Mestiashvili at 2018-04-25T10:40:33+02:00
Update changelog
Gbp
Alexandre Mestiashvili pushed to branch pristine-tar at Debian Med / plip
Commits:
f56bc7ea by Alexandre Mestiashvili at 2018-04-26T15:27:57+02:00
pristine-tar data for plip_1.4.1+dfsg.orig.tar.xz
- - - - -
2 changed files:
- + plip_1.4.1+dfsg.orig.tar.xz.delta
- + plip_1.4.1
Alexandre Mestiashvili pushed new tag debian/1.4.1+dfsg-1 at Debian Med / plip
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Alexandre Mestiashvili pushed new tag upstream/1.4.1+dfsg at Debian Med / plip
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Alexandre Mestiashvili pushed to branch master at Debian Med / libzstd
Commits:
f951eaf1 by Alexandre Mestiashvili at 2018-04-27T10:16:05+02:00
Upload to unstable
- - - - -
1 changed file:
- debian/changelog
Changes:
=
debian/changelog
Alexandre Mestiashvili pushed new tag debian/1.3.4+dfsg-1 at Debian Med /
libzstd
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Alexandre Mestiashvili pushed to branch master at Debian Med / libzstd
Commits:
7f162afc by Alexandre Mestiashvili at 2018-05-09T10:55:19+02:00
Add patch making build reproducible, Closes: #897904
- - - - -
17470bc9 by Alexandre Mestiashvili at 2018-05-09T11:03:08+02:00
Update patch skipping
Alexandre Mestiashvili pushed new tag debian/1.3.4+dfsg-3 at Debian Med /
libzstd
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Alexandre Mestiashvili pushed to branch master at Debian Med / libzstd
Commits:
e6a1b912 by Alexandre Mestiashvili at 2018-05-09T19:27:40+02:00
Add attribuition for the patch
- - - - -
1 changed file:
- debian/changelog
Changes:
=
debian/changelog
Alexandre Mestiashvili pushed to branch master at Debian Med / subread
Commits:
b354f0db by Alexandre Mestiashvili at 2018-05-18T18:12:20+02:00
New upstream version 1.6.2+dfsg
- - - - -
ce4b7129 by Alexandre Mestiashvili at 2018-05-18T18:13:26+02:00
Update upstream source from tag 'ups
Alexandre Mestiashvili pushed to branch upstream at Debian Med / subread
Commits:
b354f0db by Alexandre Mestiashvili at 2018-05-18T18:12:20+02:00
New upstream version 1.6.2+dfsg
- - - - -
16 changed files:
- doc/SubreadUsersGuide.tex
- src/HelperFunctions.c
- src/HelperFunctions.h
- src
Alexandre Mestiashvili pushed to branch pristine-tar at Debian Med / subread
Commits:
58604ecc by Alexandre Mestiashvili at 2018-05-18T18:13:26+02:00
pristine-tar data for subread_1.6.2+dfsg.orig.tar.xz
- - - - -
2 changed files:
- + subread_1.6.2+dfsg.orig.tar.xz.delta
- + subread_1.6.2
Alexandre Mestiashvili pushed new tag upstream/1.6.2+dfsg at Debian Med /
subread
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Alexandre Mestiashvili pushed new tag debian/1.6.2+dfsg-1 at Debian Med /
subread
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Alexandre Mestiashvili pushed to branch master at Debian Med / libzstd
Commits:
e1f30233 by Alexandre Mestiashvili at 2018-05-18T21:47:16+02:00
Fix varying number of threads in pzstd man page, making build reproducible
- - - - -
1 changed file:
- debian/rules
Changes
Alexandre Mestiashvili pushed to branch master at Debian Med / pyscanfcs
Commits:
cf68bc18 by Alexandre Mestiashvili at 2018-05-31T10:40:17+02:00
Bump policy 4.1.4, update VCS-* fields to salsa
- - - - -
46e80f2f by Alexandre Mestiashvili at 2018-05-31T10:44:25+02:00
Update Files-Excluded list
Alexandre Mestiashvili pushed to branch master at Debian Med / transtermhp
Commits:
6efba8b1 by Alexandre Mestiashvili at 2018-05-31T20:00:20+02:00
Apply cme fix dpkg, bump Policy to 4.1.4, fix VCS-* fields, use https
- - - - -
5f5de498 by Alexandre Mestiashvili at 2018-05-31T20:11:34+02:00
Alexandre Mestiashvili pushed new tag debian/2.09-4 at Debian Med / transtermhp
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Alexandre Mestiashvili pushed to branch pristine-tar at Debian Med / plip
Commits:
dce20f7a by Alexandre Mestiashvili at 2018-06-07T20:04:11+02:00
pristine-tar data for plip_1.4.2+dfsg.orig.tar.xz
- - - - -
2 changed files:
- + plip_1.4.2+dfsg.orig.tar.xz.delta
- + plip_1.4.2
Alexandre Mestiashvili pushed new tag debian/1.4.2+dfsg-1 at Debian Med / plip
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Alexandre Mestiashvili pushed new tag upstream/1.4.2+dfsg at Debian Med / plip
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Alexandre Mestiashvili pushed new tag upstream/1.1.1+dfsg at Debian Med /
pycorrfit
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Alexandre Mestiashvili pushed to branch master at Debian Med / pycorrfit
Commits:
49ccda18 by Alexandre Mestiashvili at 2018-06-13T14:25:53+02:00
Update Files-Excluded, add .readthedocs.yml to the list
- - - - -
78ef6455 by Alexandre Mestiashvili at 2018-06-13T14:26:33+02:00
Bump policy to
Alexandre Mestiashvili pushed to branch pristine-tar at Debian Med / pycorrfit
Commits:
9b6868ba by Alexandre Mestiashvili at 2018-06-13T14:27:03+02:00
pristine-tar data for pycorrfit_1.1.1+dfsg.orig.tar.gz
- - - - -
2 changed files:
- + pycorrfit_1.1.1+dfsg.orig.tar.gz.delta
Alexandre Mestiashvili pushed to branch upstream at Debian Med / pycorrfit
Commits:
2dfb3b2e by Alexandre Mestiashvili at 2018-06-13T14:26:57+02:00
New upstream version 1.1.1+dfsg
- - - - -
30 changed files:
- + CHANGELOG
- ChangeLog.txt
- MANIFEST.in
- README.rst
- + docs/README.md
- + docs
Alexandre Mestiashvili pushed to branch master at Debian Med / gmap
Commits:
ecd23f09 by Alexandre Mestiashvili at 2018-07-17T18:29:47+02:00
Update d/rules, remove find needed for debugging
- - - - -
1 changed file:
- debian/rules
Changes:
=
debian
The branch, master has been created
at b3d919be41c7309e37ab9b5d1ea0f07b9ec23ec1 (commit)
- Shortlog
commit b3d919be41c7309e37ab9b5d1ea0f07b9ec23ec1
Author: Alexandre Mestiashvili
Date: Tue Feb 21 18:10:56 2012 +0100
The branch, upstream has been created
at 4b732fc3aa3fa95ee87904aff06325a38a804fb6 (commit)
- Shortlog
---
--
ultrafast memory-efficient short read aligner
__
The branch, pristine-tar has been created
at c9b3332baf6cefab6db53a379e0e3a6ad70278f2 (commit)
- Shortlog
commit c9b3332baf6cefab6db53a379e0e3a6ad70278f2
Author: Alexandre Mestiashvili
Date: Tue Feb 21 15:13:13 2012 +
The annotated tag, upstream/2.0.0-beta5 has been created
at 4c2fdc061c6f33b05c9e9237177155f97cc87fb0 (tag)
tagging 4b732fc3aa3fa95ee87904aff06325a38a804fb6 (commit)
tagged by Alexandre Mestiashvili
on Tue Feb 21 15:13:14 2012 +
- Shortlog
The following commit has been merged in the master branch:
commit 4cbe5c0bcda26d66da8fc5a4b77654701ef32de6
Author: Alexandre Mestiashvili
Date: Tue Feb 21 18:52:00 2012 +0100
set to UNRELEASED, debian/rules help2man for missing man pages
diff --git a/debian/bowtie2.dirs b/debian/bowtie2
The following commit has been merged in the master branch:
commit 99c8c05231df67ccb037cc6e75a3dd7aee0ca53b
Merge: 1c63e02dccb400fd7cc8e61c4e8783950aafa036
c7c402a1f85d7a9d9726c869dfb0ac36ef594360
Author: Alexandre Mestiashvili
Date: Wed Feb 22 11:01:53 2012 +0100
Merge branch 'maste
The following commit has been merged in the master branch:
commit 5cc8819596b0a92dd5ba16623f5e69740d37ecaf
Author: Alexandre Mestiashvili
Date: Wed Feb 22 11:15:52 2012 +0100
NEWS removed from bowtie2.docs and used as Upstream's changelog
diff --git a/debian/bowtie2.docs b/debian/bo
The following commit has been merged in the master branch:
commit 1c63e02dccb400fd7cc8e61c4e8783950aafa036
Author: Alexandre Mestiashvili
Date: Wed Feb 22 08:42:40 2012 +0100
Fixed minor linitan complains , added ls.h to debain/copyright
License is GPL3 and not GPL2.
Added manual
The following commit has been merged in the master branch:
commit 2e113a6bcb544bd8c0355042a2a4124125602cee
Author: Alexandre Mestiashvili
Date: Wed Feb 22 11:22:45 2012 +0100
Added debian/upstream
diff --git a/debian/upstream b/debian/upstream
new file mode 100644
index 000..c46ccf9
The following commit has been merged in the master branch:
commit 794bafae716cb47616d750a321585ebaf497565d
Author: Alexandre Mestiashvili
Date: Wed Feb 22 12:35:04 2012 +0100
debian/rules using commit of Andreas
diff --git a/debian/rules b/debian/rules
index 559fce6..2f74e57 100755
--- a
The following commit has been merged in the master branch:
commit 6ecb1b218db9a353f4d71f9f80f80f0eb3a7ed0e
Author: Alexandre Mestiashvili
Date: Sat Mar 10 20:58:14 2012 +0100
added information about sse_util.h with mising license statement
patch to disable unknown flags for certain
The following commit has been merged in the master branch:
commit 8fda61551c53650a8fddb1ae76fcc15056663710
Merge: d8c3c758a2ec1badb986b3f77aba2c5e45827035
747fa7b771bc17cc627fddde0737ffd1d5d10c6f
Author: Alexandre Mestiashvili
Date: Sat Apr 14 10:12:40 2012 +0200
Merge tag 'upstream/
The following commit has been merged in the master branch:
commit 45c55eba4f5486191184aeaf21e6c16c9b34b725
Author: Alexandre Mestiashvili
Date: Sat Apr 14 10:41:37 2012 +0200
updated debian/patches
updated debian/changelog
diff --git a/debian/changelog b/debian/changelog
index 3ce9c42
The following commit has been merged in the pristine-tar branch:
commit 9054e5e332922ec0b025feca0529436a00a5115e
Author: Alexandre Mestiashvili
Date: Sat Apr 14 10:12:40 2012 +0200
pristine-tar data for tophat_2.0.0.orig.tar.gz
diff --git a/tophat_2.0.0.orig.tar.gz.delta b/tophat_2.0.0
The following commit has been merged in the master branch:
commit fc9cd68bea90178a2b2e44d505f48e4b0e77a2d9
Author: Alexandre Mestiashvili
Date: Sat Apr 14 11:20:51 2012 +0200
debian/control added libboost-thread-dev dependency
Suggests: bowtie2
diff --git a/debian/control b/debian
The annotated tag, upstream/2.0.0 has been created
at 24044d215254ef6f7673cfce4ac3664d4d4b3b74 (tag)
tagging 747fa7b771bc17cc627fddde0737ffd1d5d10c6f (commit)
replaces upstream/1.4.1
tagged by Alexandre Mestiashvili
on Sat Apr 14 10:12:40 2012 +0200
- Shortlog
The following commit has been merged in the master branch:
commit 1ebd0789996a9eb1d9c576039ad2a433522058bb
Author: Alexandre Mestiashvili
Date: Sat Apr 14 11:52:34 2012 +0200
debian/control Standards-Version: 3.9.3 Depends: bowtie2
debian/copyright updated Format, removed seqan
The following commit has been merged in the master branch:
commit 8a94679e5edd27fa72308d20d161a774c6e374f5
Author: Alexandre Mestiashvili
Date: Sat Apr 14 12:45:45 2012 +0200
debian/get-orig-source - removes shipped with tophat SeqAn files.
diff --git a/debian/changelog b/debian/changelog
The following commit has been merged in the master branch:
commit 63de8d6638c5c54675387b2e96a46b8351436639
Author: Alexandre Mestiashvili
Date: Wed May 9 14:07:27 2012 +0200
uname -m doesn't detect 32 bit chroot env
diff --git a/debian/patches/fix_makefile_machine_detection.pat
The following commit has been merged in the master branch:
commit bc61822d516c2ca19e74ed47e0e76dd20bb05ab3
Author: Alexandre Mestiashvili
Date: Wed May 9 14:22:08 2012 +0200
fixed too-long line in changelog, added versioned URI format for copyright
removed bug close statement (not sure
The following commit has been merged in the master branch:
commit 2f459ff23e4544f9fd469c9b51b7d390221dcabd
Author: Alexandre Mestiashvili
Date: Wed May 9 14:47:46 2012 +0200
updated changelog to reflect git changes
diff --git a/debian/changelog b/debian/changelog
index 8d6ee53..756a464
The following commit has been merged in the master branch:
commit d374b906850002f364610c535789e2bc85b1fd12
Author: Alexandre Mestiashvili
Date: Wed May 9 14:10:45 2012 +0200
added patch fixing #672090
updated DEP3 headers
bumperd Standards-Version to 3.9.3
diff --git a/debian
The following commit has been merged in the master branch:
commit 7814d8dd094102bcd80c5dd0ef3e5254b48f70c8
Author: Alexandre Mestiashvili
Date: Fri May 11 08:36:20 2012 +0200
updated debian/watch and get-orig-source to track -source suffix
diff --git a/debian/get-orig-source b/debian/get
The following commit has been merged in the pristine-tar branch:
commit a0da20969cc65056a30bda55b6e3b11b281c095c
Author: Alexandre Mestiashvili
Date: Fri May 11 08:41:50 2012 +0200
pristine-tar data for bowtie2_2.0.0-beta6.orig.tar.gz
diff --git a/bowtie2_2.0.0-beta6.orig.tar.gz.delta
b
The following commit has been merged in the master branch:
commit f8cec87fd958ee813ab2b127b099da4f233e30bf
Merge: 7814d8dd094102bcd80c5dd0ef3e5254b48f70c8
98900480623909d99a6eb707422d84033401b320
Author: Alexandre Mestiashvili
Date: Fri May 11 08:41:50 2012 +0200
Merge tag 'upstream/
The annotated tag, upstream/2.0.0-beta6 has been created
at bc543a4df6196d1f4fb212cb8a255c54b3e5922f (tag)
tagging 98900480623909d99a6eb707422d84033401b320 (commit)
replaces upstream/2.0.0-beta5
tagged by Alexandre Mestiashvili
on Fri May 11 08:41:50 2012 +0200
The following commit has been merged in the master branch:
commit 9dd9b1985619244b609496ded13c51c4cfdebc39
Author: Alexandre Mestiashvili
Date: Sat May 12 12:07:06 2012 +0200
add -msse2 only for intel architectures
diff --git a/debian/patches/fix_makefile_machine_detection.patch
b/debian
The following commit has been merged in the master branch:
commit fc15174e3a5d23d862ad07cb8a66b9943690917c
Author: Alexandre Mestiashvili
Date: Sun May 13 14:01:21 2012 +0200
updated debian/changelog
diff --git a/debian/changelog b/debian/changelog
index 4ecd78b..ce0c0b1 100644
--- a
The tag, debian/2.0.0-beta6-1 has been created
at fc15174e3a5d23d862ad07cb8a66b9943690917c (commit)
- Shortlog
commit fc15174e3a5d23d862ad07cb8a66b9943690917c
Author: Alexandre Mestiashvili
Date: Sun May 13 14:01:21 2012
The following commit has been merged in the master branch:
commit 6fa162f402a4a0350fa162ae6e5f4320c9857ff5
Author: Alexandre Mestiashvili
Date: Mon May 14 10:21:21 2012 +0200
Bumped Standards-Version: 3.9.3
diff --git a/debian/control b/debian/control
index 259a7c5..884234a 100644
--- a
The following commit has been merged in the master branch:
commit 5117c55213ddfda5fe2879530da0fb06e08472f1
Author: Alexandre Mestiashvili
Date: Thu May 31 17:52:40 2012 +0200
normalized output of dpkg-architecture,
so for example kfreebsd-amd64 is detected as an amd64 architecture
The tag, debian/2.0.0-beta6-2 has been created
at 5117c55213ddfda5fe2879530da0fb06e08472f1 (commit)
- Shortlog
commit 5117c55213ddfda5fe2879530da0fb06e08472f1
Author: Alexandre Mestiashvili
Date: Thu May 31 17:52:40 2012
The following commit has been merged in the master branch:
commit 0f973db67421a63cfbb864ff7ca3be738e2f1920
Author: Alexandre Mestiashvili
Date: Fri Jun 1 21:36:55 2012 +0200
normalized architecture detection
so for example kfreebsd-amd64 is detected as an amd64 architecture
and
The following commit has been merged in the master branch:
commit 3318120c5db61abc6717f8629198fcd9f0bea05d
Author: Alexandre Mestiashvili
Date: Fri Jun 1 21:59:39 2012 +0200
updated changelog
diff --git a/debian/changelog b/debian/changelog
index 3f2c60c..da61ada 100644
--- a/debian
The tag, debian/2.0.0-beta6-3 has been created
at 3318120c5db61abc6717f8629198fcd9f0bea05d (commit)
- Shortlog
commit 3318120c5db61abc6717f8629198fcd9f0bea05d
Author: Alexandre Mestiashvili
Date: Fri Jun 1 21:59:39 2012
The following commit has been merged in the master branch:
commit b01514b30354dccc6a7f43e6acc002aec9f5b64b
Author: Alexandre Mestiashvili
Date: Tue Jun 5 10:44:18 2012 +0200
debian/patches imported 0004-fix-m64-usage-and-lfs.patch from Ubuntu
diff --git a/debian/patches/0004-fix-m64-usage
The following commit has been merged in the master branch:
commit a2b03244dce1226a91c9f1a2ee08bf2cb7dd5aec
Author: Alexandre Mestiashvili
Date: Sat Jun 9 08:43:14 2012 +0200
debian/changelog imported patch closes #675985
diff --git a/debian/changelog b/debian/changelog
index 1aecd62
The following commit has been merged in the master branch:
commit 83c54a812cb07b7ccc4a166ed515f789b6e97b7b
Merge: 9b8f8b203f50787eb66471ac34063399e577ad9b
556c8c77f9d4e5d380bb05c1fb333c40fed89f13
Author: Alexandre Mestiashvili
Date: Sat Jun 9 11:06:09 2012 +0200
Merge tag 'upstream/
The following commit has been merged in the master branch:
commit 858f4330e26145ea76048e224d12dc80a8027164
Author: Alexandre Mestiashvili
Date: Sat Jun 9 11:06:46 2012 +0200
tophat depends on bowtie or bowtie2
diff --git a/debian/changelog b/debian/changelog
index 819b0c0..82cc7a6 100644
The following commit has been merged in the master branch:
commit 3b790e2081a927077186a31dbc8409e5d2ee476e
Author: Alexandre Mestiashvili
Date: Sat Jun 9 11:19:55 2012 +0200
unreleased->unstable
diff --git a/debian/changelog b/debian/changelog
index 82cc7a6..6564817 100644
--- a/deb
The following commit has been merged in the pristine-tar branch:
commit 139d0320cf49e3e8bd38d5e93ec86078b3b3be84
Author: Alexandre Mestiashvili
Date: Sat Jun 9 11:06:09 2012 +0200
pristine-tar data for tophat_2.0.3.orig.tar.gz
diff --git a/tophat_2.0.3.orig.tar.gz.delta b/tophat_2.0.3
The following commit has been merged in the master branch:
commit 67f4e8162b71be8a202d7aa1accee99dc0f21443
Author: Alexandre Mestiashvili
Date: Sat Jun 9 11:09:49 2012 +0200
refreshed debian/patches/fix_includes_path.patch
diff --git a/debian/patches/fix_includes_path.patch
b/debian
The following commit has been merged in the master branch:
commit e045e8b24e55af4d85410004aaf3e73b2046d976
Author: Alexandre Mestiashvili
Date: Mon Jun 25 15:35:51 2012 +0200
debian/control only i386* and amd64* architecures are supported
diff --git a/debian/changelog b/debian/changelog
The following commit has been merged in the master branch:
commit 991b8398d88a7e1c2eeec183d0306a039785dfe6
Author: Alexandre Mestiashvili
Date: Mon Jul 2 16:21:25 2012 +0200
debhelper v9
diff --git a/debian/compat b/debian/compat
index 45a4fb7..ec63514 100644
--- a/debian/compat
+++ b
The following commit has been merged in the master branch:
commit fb08d9d238035e71725939b8a3e36d9b41aa5e53
Author: Alexandre Mestiashvili
Date: Mon Jul 2 16:28:05 2012 +0200
debian/rules added hardening flags
diff --git a/debian/changelog b/debian/changelog
index 6307548..f53825c 100644
The following commit has been merged in the master branch:
commit de0c32fc6c3d0e92ce98eaafa09ed863df34b488
Author: Alexandre Mestiashvili
Date: Tue Jul 3 10:23:06 2012 +0200
hardening.patch to inject hardening CPPFLAGS
diff --git a/debian/changelog b/debian/changelog
index f53825c
The following commit has been merged in the master branch:
commit 246c7d7efaa90790f2ca04880adf2605539fc42c
Merge: de0c32fc6c3d0e92ce98eaafa09ed863df34b488
da842779f3d21d2e844a3ea0bdb10f060787f607
Author: Alexandre Mestiashvili
Date: Tue Jul 17 09:39:57 2012 +0200
Merge tag 'upstream/
The following commit has been merged in the pristine-tar branch:
commit 4680cc05ab62186309f8ea9f7f344bdf412d1a7f
Author: Alexandre Mestiashvili
Date: Tue Jul 17 09:39:57 2012 +0200
pristine-tar data for bowtie2_2.0.0-beta7.orig.tar.gz
diff --git a/bowtie2_2.0.0-beta7.orig.tar.gz.delta
b
The annotated tag, upstream/2.0.0-beta7 has been created
at 5663db6012ceb2b7516e2dae0575ef9227601e63 (tag)
tagging da842779f3d21d2e844a3ea0bdb10f060787f607 (commit)
replaces upstream/2.0.0-beta6
tagged by Alexandre Mestiashvili
on Tue Jul 17 09:39:57 2012 +0200
The annotated tag, upstream/2.0.0-beta7 has been deleted
was 5663db6012ceb2b7516e2dae0575ef9227601e63
---
tag upstream/2.0.0-beta7
Upstream version 2.0.0-beta7
da842779f3d21d2e844a3ea0bdb10f060787f607 Imported Upstream ve
The following commit has been merged in the master branch:
commit fece62a8bf7619bb6d1e09019fed86b429ef6295
Merge: de0c32fc6c3d0e92ce98eaafa09ed863df34b488
7b518c0a4b114723c20180de160fc111c35bd577
Author: Alexandre Mestiashvili
Date: Mon Jul 30 13:37:59 2012 +0200
Merge tag 'upstream/
The following commit has been merged in the master branch:
commit db5e7eb8a1ddce5b6191163e2c80a5135fcc
Author: Alexandre Mestiashvili
Date: Mon Jul 30 13:53:59 2012 +0200
changelog update
diff --git a/debian/changelog b/debian/changelog
index 344b17e..eca3256 100644
--- a/debian
The following commit has been merged in the pristine-tar branch:
commit 3b2d29a149a660db00acc0c512ceb093a5e2d02a
Author: Alexandre Mestiashvili
Date: Mon Jul 30 13:37:59 2012 +0200
pristine-tar data for bowtie2_2.0.0-beta7.orig.tar.gz
diff --git a/bowtie2_2.0.0-beta7.orig.tar.gz.delta
b
The annotated tag, upstream/2.0.0-beta7 has been created
at d23620f90d0dccbec4a445670556b69d8a1affdf (tag)
tagging 7b518c0a4b114723c20180de160fc111c35bd577 (commit)
replaces upstream/2.0.0-beta6
tagged by Alexandre Mestiashvili
on Mon Jul 30 13:37:59 2012 +0200
The following commit has been merged in the master branch:
commit fdec80e23ed8f8417db21aa7c6feae6f8bb68e55
Author: Alexandre Mestiashvili
Date: Fri Aug 3 15:43:56 2012 +0200
overrided lintian's warning
diff --git a/debian/bowtie2-examples.lintian-overrides
b/debian/bo
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