Author: tille
Date: 2010-12-30 19:37:58 + (Thu, 30 Dec 2010)
New Revision: 5630
Added:
trunk/packages/gnumed-client/tags/0.7.10-1/
Removed:
trunk/packages/gnumed-client/tags/0.7.10/
Log:
Fixed tag og gnmed-client security update
___
: #608190
+
+ -- Andreas Tille ti...@debian.org Wed, 29 Dec 2010 08:29:27 +0100
+
+gnumed-client (0.8.5-1) unstable; urgency=low
+
+ * Upstream bugfix release.
+
+ -- Andreas Tille ti...@debian.org Sun, 05 Dec 2010 23:37:38 +0100
+
gnumed-client (0.7.10-1) testing-proposed-updates; urgency=low
- just remove (I just introduced a changelog entry
+for the security upload below)
+
+ -- Andreas Tille ti...@debian.org Thu, 30 Dec 2010 20:45:54 +0100
+
+gnumed-client (0.7.10-2) testing-proposed-updates; urgency=low
+
+ * Fix /etc/gnumed/gnumed-client.conf which was referencing a future
Author: tille
Date: 2011-01-07 12:08:34 + (Fri, 07 Jan 2011)
New Revision: 5641
Added:
trunk/packages/biomaj/
trunk/packages/biomaj/trunk/
Log:
Create dir for BioMAJ packaging
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Author: tille
Date: 2011-01-07 20:11:46 + (Fri, 07 Jan 2011)
New Revision: 5642
Modified:
trunk/community/website/index.php
Log:
Exclude link to ddtp pages because non-functional for a long time; needs fixing
- most probably using the Python code which is used for tasks / bugs pages.
Author: tille
Date: 2011-01-11 07:28:01 + (Tue, 11 Jan 2011)
New Revision: 5644
Removed:
trunk/packages/gnumed-client/tags/0.7.6-1/
trunk/packages/gnumed-client/tags/0.7.6-2/
trunk/packages/gnumed-client/tags/0.7.7-1/
trunk/packages/gnumed-client/tags/0.7.8-1/
===
--- trunk/packages/gnumed-server/trunk/debian/changelog 2011-01-11 07:28:01 UTC
(rev 5644)
+++ trunk/packages/gnumed-server/trunk/debian/changelog 2011-01-11 08:06:26 UTC
(rev 5645)
@@ -1,3 +1,9 @@
+gnumed-server (14.6-1) unstable; urgency=low
+
+ * New upstream version
+
+ -- Andreas
Author: tille
Date: 2011-01-11 08:08:35 + (Tue, 11 Jan 2011)
New Revision: 5646
Added:
trunk/packages/gnumed-server/tags/14.6-1/
Log:
Tagged 14.6-1
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upload below)
+ * New upstream version
- -- Andreas Tille ti...@debian.org Thu, 30 Dec 2010 20:45:54 +0100
+ -- Andreas Tille ti...@debian.org Tue, 11 Jan 2011 09:53:51 +0100
+gnumed-client (0.7.10-2.1) testing-proposed-updates; urgency=low
+
+ * Non-maintainer upload.
+ * Drop misplaced
Author: tille
Date: 2011-01-11 10:14:57 + (Tue, 11 Jan 2011)
New Revision: 5648
Added:
trunk/packages/gnumed-client/tags/0.8.6-1/
Log:
Tagged 0.8.6-1
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Author: tille
Date: 2011-01-11 13:26:04 + (Tue, 11 Jan 2011)
New Revision: 5651
Removed:
trunk/packages/biomaj/trunk/debian/biomaj/
Log:
Delete installed files of biomaj
___
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Author: tille
Date: 2011-01-11 13:27:41 + (Tue, 11 Jan 2011)
New Revision: 5652
Removed:
trunk/packages/biomaj/trunk/debian/biomaj.debhelper.log
trunk/packages/biomaj/trunk/debian/biomaj.postrm.debhelper
trunk/packages/biomaj/trunk/debian/biomaj.substvars
Author: tille
Date: 2011-01-11 13:38:28 + (Tue, 11 Jan 2011)
New Revision: 5654
Added:
trunk/packages/biomaj/trunk/debian/biomaj.postinst
trunk/packages/biomaj/trunk/debian/biomaj.postrm
trunk/packages/biomaj/trunk/debian/biomaj.prerm
Removed:
Author: tille
Date: 2011-01-13 13:00:54 + (Thu, 13 Jan 2011)
New Revision: 5656
Removed:
trunk/packages/amap-align/branches/upstream/2.0/amap
trunk/packages/amap-align/branches/upstream/current/amap
Log:
Removed binaries but leave the code because it vanished upstream
Deleted:
[ Charles Plessy ]
* Updated my email address.
@@ -6,8 +6,23 @@
[ David Paleino ]
* debian/control: removed myself from Uploaders
- -- David Paleino d.pale...@gmail.com Wed, 13 May 2009 07:29:37 +0200
+ [ Andreas Tille ]
+ * debian/control:
+- Standards-Version: 3.9.1
Author: tille
Date: 2011-01-13 13:22:40 + (Thu, 13 Jan 2011)
New Revision: 5658
Added:
trunk/packages/amap-align/tags/2.2-2/
Log:
Tagges 2.2-2
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Author: tille
Date: 2011-01-14 07:34:40 + (Fri, 14 Jan 2011)
New Revision: 5659
Removed:
trunk/packages/boxshade/branches/
Log:
Remove upstream code
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myself from Uploaders
- -- David Paleino d.pale...@gmail.com Sat, 23 May 2009 14:42:17 +0200
+ [ Andreas Tille ]
+ * debian/control
+- Standards-Version: 3.9.1 (no changes needed)
+- Debhelper 7
+- Fix spelling of Debian Med in maintainer address
+ * debian/rules: s/dh_clean -k/dh_prep
to make sure the
+resulting tarball will be identically
+ * debian/source/format: 3.0 (quilt)
+ * debian/rules: remove dh_desktop call
+
+ -- Andreas Tille ti...@debian.org Fri, 14 Jan 2011 08:40:14 +0100
+
fastlink (4.1P-fix95-1) unstable; urgency=low
* New upstream bugfix release
Author: tille
Date: 2011-01-14 12:35:07 + (Fri, 14 Jan 2011)
New Revision: 5663
Removed:
trunk/packages/dialign/branches/
Log:
Removed upstream source
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of the bibliographic reference in ‘debian/control’.
- -- David Paleino d.pale...@gmail.com Sat, 23 May 2009 14:42:57 +0200
+ [ Andreas Tille ]
+ * debian/control:
+- Standards-Version: 3.9.1 (no changes needed)
+- Debhelper 7
+- s/dpatch/quilt/
+- spelling of Debian Med
+ * debian/patches
Author: tille
Date: 2011-01-16 21:42:07 + (Sun, 16 Jan 2011)
New Revision: 5672
Modified:
trunk/packages/med-doc/trunk/
Log:
remove svn:externals
Property changes on: trunk/packages/med-doc/trunk
___
Deleted: svn:externals
===
--- trunk/packages/freediams/trunk/debian/changelog 2011-01-16 22:20:31 UTC
(rev 5675)
+++ trunk/packages/freediams/trunk/debian/changelog 2011-01-17 08:16:24 UTC
(rev 5676)
@@ -1,10 +1,13 @@
freediams (0.5.4-1) unstable; urgency=low
+ [ Andreas Tille ]
+ * New upstream
=low
+
+ * New upstream version
+ * debian/get-orig-source: Make sure MD5sum stays the same for different
+download
+
+ -- Andreas Tille ti...@debian.org Wed, 19 Jan 2011 08:48:19 +0100
+
velvet (1.0.15~nozlibcopy-2) unstable; urgency=low
* Fix FTBFS with ld --as-needed (thanks
Author: tille
Date: 2011-01-19 08:00:40 + (Wed, 19 Jan 2011)
New Revision: 5681
Added:
trunk/packages/velvet/tags/1.0.18~nozlibcopy-1/
Log:
Tagged 1.0.18~nozlibcopy-1
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)
@@ -1,10 +1,22 @@
-biofox (1.1.5-2) UNRELEASED; urgency=low
+biofox (1.6-1) unstable; urgency=low
+ [Charles Plessy]
* debian/control:
- Depend on xulrunner, and recommend iceweasel | iceape-browser.
- -- Charles Plessy ple...@debian.org Mon, 30 Mar 2009 13:03:18 +0900
+ [Andreas Tille
Author: tille
Date: 2011-01-19 10:13:59 + (Wed, 19 Jan 2011)
New Revision: 5683
Added:
trunk/packages/biofox/tags/1.6-1/
Log:
Tagged 1.6-1
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(2002-2) unstable; urgency=low
- [Andreas Tille]
* debian/control:
- Team maintained in Debian Med team and added myself to uploaders
- Removed '[biology]' from short description because we agreed not to use
this any more
- Fixed typo in Vcs-Browser field
-- Standards
Author: tille
Date: 2011-01-24 13:40:39 + (Mon, 24 Jan 2011)
New Revision: 5691
Added:
trunk/packages/coils/tags/2002-2/
Log:
Tagged 2002-2
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: 3.9.1 (no changes needed)
+ * debhelper 7
+ * Added watch file
+ * Source Format 3.0 (quilt)
+
+ -- Andreas Tille ti...@debian.org Mon, 24 Jan 2011 14:52:31 +0100
+
+r-other-mott-happy (2.2.hbrem~beta-2) UNRELEASED; urgency=low
+
* patch to happyplot
-- Steffen Moeller moel...@debian.org Wed
Uploaders: Steffen Moeller moel...@debian.org,
Andreas Tille ti...@debian.org
-Build-Depends: debhelper (= 7), cdbs, r-base-dev, r-cran-g.data,
r-cran-multicore
+Build-Depends: debhelper (= 7), cdbs, r-base-dev, r-cran-g.data,
r-cran-multicore, r-cran-mass
Standards-Version: 3.9.1
Homepage: http
informations in ‘debian/upstream-metadata.yaml’.
- -- Charles Plessy ple...@debian.org Thu, 21 Jan 2010 13:16:06 +0900
+ [ Andreas Tille ]
+ * debian/control
+- added myself to uploaders
+- Standards-Version: 3.9.1 (no changes needed)
+- debhelper 7
+ * debian/watch: Allso catch RC candidates
packages to get the same effect as the patch but
+there is no need to change the patch for new versions
+
+ -- Andreas Tille ti...@debian.org Mon, 24 Jan 2011 15:58:07 +0100
+
mcl (1:10-148-1) unstable; urgency=low
* New upstream release
Modified: trunk/packages/mcl/trunk/debian/control
: 3.0 (quilt)
+ * debian/rules: No executable flag for PDF files
+
+ -- Andreas Tille ti...@debian.org Mon, 24 Jan 2011 17:08:21 +0100
+
r-cran-genetics (1.3.4-1) unstable; urgency=low
[ Charles Plessy ]
Modified: trunk/packages/R/r-cran-genetics/trunk/debian/control
Author: tille
Date: 2011-01-24 16:52:13 + (Mon, 24 Jan 2011)
New Revision: 5698
Added:
trunk/packages/R/r-cran-genetics/tags/1.3.5-1/
Log:
Tagged 1.3.5-1
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Moeller]
+FIXME
+ * debian/README.Debian
+ please comment here - it seems to contradict what
+you said on the mailing list, at least I [Andreas Tille] reverted
+the change in debian/control which is identical to 2.1-5 version
+/FIXME
+
+ [Andreas Tille]
+ * New upstream
Author: tille
Date: 2011-01-25 11:54:49 + (Tue, 25 Jan 2011)
New Revision: 5703
Added:
trunk/packages/mcl/tags/1:10-201-21/
Log:
Tagged 10-201-21
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: rewritten to use dh
+ * debian/patches: use quilt
+ * debian/patches/01-makefile.diff: Removed because unneeded
+with current packaging
+ * debian/{examples,install,manpages}: added
+
+ -- Andreas Tille ti...@debian.org Tue, 25 Jan 2011 13:32:41 +0100
+
gff2aplot (2.0-5) unstable; urgency
Author: tille
Date: 2011-01-25 13:19:03 + (Tue, 25 Jan 2011)
New Revision: 5705
Added:
trunk/packages/gff2aplot/tags/2.0-6/
Log:
Tagged 2.0-6
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version rather
+than currently packaged upstream tarball
+ * debian/rules: dh $@ --with javahelper
+ * debian/control: Build-Depends: javahelper
+
+ -- Andreas Tille ti...@debian.org Tue, 25 Jan 2011 17:07:07 +0100
+
imagej (1.44i-1) unstable; urgency=low
* Team upload.
Modified: trunk
Author: tille
Date: 2011-01-25 16:34:07 + (Tue, 25 Jan 2011)
New Revision: 5707
Added:
trunk/packages/imagej/tags/1.44n-1/
Log:
Tagged 1.44n-1
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Author: tille
Date: 2011-01-25 16:35:05 + (Tue, 25 Jan 2011)
New Revision: 5708
Removed:
trunk/packages/imagej/tags/1.41n-1/
trunk/packages/imagej/tags/1.43b-1/
trunk/packages/imagej/tags/1.43e-1/
trunk/packages/imagej/tags/1.43g-1/
trunk/packages/imagej/tags/1.43k-1/
Author: tille
Date: 2011-01-26 08:16:23 + (Wed, 26 Jan 2011)
New Revision: 5710
Added:
trunk/packages/R/r-cran-randomforest/tags/4.6-2-1/
Removed:
trunk/packages/R/r-cran-randomforest/tags/4.5-30-1/
trunk/packages/R/r-cran-randomforest/tags/4.5-33-1/
Log:
Tagged 4.6-2-1
===
--- trunk/packages/R/r-cran-qtl/trunk/debian/changelog 2011-01-26 08:16:23 UTC
(rev 5710)
+++ trunk/packages/R/r-cran-qtl/trunk/debian/changelog 2011-01-26 09:13:16 UTC
(rev 5711)
@@ -1,3 +1,9 @@
+qtl (1.19-20-1) unstable; urgency=low
+
+ * New upstream version
+
+ -- Andreas Tille ti
Author: tille
Date: 2011-01-26 09:15:44 + (Wed, 26 Jan 2011)
New Revision: 5712
Added:
trunk/packages/R/r-cran-qtl/tags/1.19-20-1/
Removed:
trunk/packages/R/r-cran-qtl/tags/1.14-2-1/
trunk/packages/R/r-cran-qtl/tags/1.16-6-1/
Log:
Tagged 1.19-20-1
:
+ Replaced by sed script in debian/rules which works (hopefully)
+ for future versions as well without manually changing the patch
+- use_muscle_instead_of_clustalw.patch:
+ Removed because clustalw is no in main and we do not need
+ to actively replace it by muscle
+
+ -- Andreas Tille
was applied upstream
+ + Other purpose was to enable liblapack (patch by Morten
+Kjeldgaard) which was discussed with upstream and seems to
+cause problems. So it was deactivated for now and might be
+tested later for enabling higher performance if needed.
-- Andreas Tille ti
Author: tille
Date: 2011-01-27 10:04:51 + (Thu, 27 Jan 2011)
New Revision: 5715
Added:
trunk/packages/theseus/tags/1.6.1-1/
Log:
Tagged 1.6.1-1
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)
+++ trunk/packages/meme/trunk/debian/changelog 2011-01-28 17:42:48 UTC (rev
5729)
@@ -1,6 +1,6 @@
-meme (3.0.13-1) unstable; urgency=low
+meme (4.5.0-1) unstable; urgency=low
* Initial Release.
- -- Steffen Moeller moel...@pzr.uni-rostock.de Thu, 20 Jan 2005 02:36:49
+0100
+ -- Andreas Tille
yask.gupt...@gmail.com,
+ Andreas TIlle ti...@debian.org
+Build-Depends: debhelper (= 7.1)
Standards-Version: 3.9.1
Homepage: http://bowtie-bio.sourceforge.net/
Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/bowtie/trunk
Modified: trunk/packages/bowtie/trunk/debian/watch
Author: tille
Date: 2011-01-29 11:24:31 + (Sat, 29 Jan 2011)
New Revision: 5737
Added:
trunk/packages/bowtie/trunk/debian/get-orig-source
Modified:
trunk/packages/bowtie/trunk/debian/rules
Log:
Added get-orig-source
Added: trunk/packages/bowtie/trunk/debian/get-orig-source
yask.gupt...@gmail.com,
- Andreas TIlle ti...@debian.org
+ Andreas Tille ti...@debian.org
Build-Depends: debhelper (= 7.1)
Standards-Version: 3.9.1
Homepage: http://bowtie-bio.sourceforge.net/
@@ -15,6 +15,7 @@
Package: bowtie
Architecture: any
Depends: ${shlibs:Depends}, ${misc:Depends}
+Suggests
Author: tille
Date: 2011-01-29 16:32:01 + (Sat, 29 Jan 2011)
New Revision: 5747
Added:
trunk/packages/bowtie/trunk/debian/bowtie.docs
trunk/packages/bowtie/trunk/debian/bowtie.links
trunk/packages/bowtie/trunk/debian/bowtie.manpages
Removed:
trunk/packages/bowtie/trunk/debian/docs
Author: tille
Date: 2011-01-29 20:46:56 + (Sat, 29 Jan 2011)
New Revision: 5768
Removed:
trunk/packages/wgs-assembler/trunk/debian/wgs-assembler/
Log:
Remove remainings from failed build
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Date: 2011-01-29 20:48:07 + (Sat, 29 Jan 2011)
New Revision: 5769
Removed:
trunk/packages/wgs-assembler/trunk/debian/emacsen-install.ex
trunk/packages/wgs-assembler/trunk/debian/emacsen-remove.ex
trunk/packages/wgs-assembler/trunk/debian/emacsen-startup.ex
Author: tille
Date: 2011-01-29 20:59:15 + (Sat, 29 Jan 2011)
New Revision: 5772
Modified:
trunk/packages/ensembl/ensembl/57/debian/watch
Log:
Use passive option for ftp server which increases chances to really get the
package
Modified: trunk/packages/ensembl/ensembl/57/debian/watch
Author: tille
Date: 2011-01-29 21:03:19 + (Sat, 29 Jan 2011)
New Revision: 5773
Modified:
trunk/packages/ensembl/ensembl/57/debian/prepare_ensembl_source_packages.sh
Log:
Make sure MD5sum of orig.tar.gz tarballs will remain the same for different
checkouts
Modified:
Author: tille
Date: 2011-01-29 21:05:42 + (Sat, 29 Jan 2011)
New Revision: 5774
Modified:
trunk/packages/ensembl/ensembl/57/debian/rules
Log:
Provide get-orig-source target
Modified: trunk/packages/ensembl/ensembl/57/debian/rules
Author: tille
Date: 2011-01-29 21:57:35 + (Sat, 29 Jan 2011)
New Revision: 5782
Added:
trunk/packages/ensembl/ensembl/57/debian/po/
trunk/packages/ensembl/ensembl/57/debian/po/POTFILES.in
trunk/packages/ensembl/ensembl/57/debian/po/templates.pot
Modified:
Author: tille
Date: 2011-01-29 22:05:00 + (Sat, 29 Jan 2011)
New Revision: 5783
Modified:
trunk/packages/ensembl/ensembl/57/debian/rules
Log:
Add dh_installdebconf to debian/roles which finally does the trick to install
templates and config into the package
Modified:
Author: tille
Date: 2011-01-29 22:52:19 + (Sat, 29 Jan 2011)
New Revision: 5789
Modified:
trunk/packages/velvet/trunk/debian/get-orig-source
Log:
Typo
Modified: trunk/packages/velvet/trunk/debian/get-orig-source
===
---
Author: tille
Date: 2011-01-29 22:54:29 + (Sat, 29 Jan 2011)
New Revision: 5790
Modified:
trunk/packages/bowtie/trunk/debian/get-orig-source
Log:
Fix comment
Modified: trunk/packages/bowtie/trunk/debian/get-orig-source
===
Author: tille
Date: 2011-01-29 23:16:42 + (Sat, 29 Jan 2011)
New Revision: 5791
Added:
trunk/packages/mothur/trunk/debian/get-orig-source
trunk/packages/mothur/trunk/debian/watch
Modified:
trunk/packages/mothur/trunk/debian/rules
Log:
Provide watch file; rewrite get-orig-source based
...@evolbio.mpg.de Fri, 02 Jul 2010
12:27:50 +0200
+ -- Andreas Tille ti...@debian.org Sun, 30 Jan 2011 00:21:42 +0100
Modified: trunk/packages/mothur/trunk/debian/control
===
--- trunk/packages/mothur/trunk/debian/control 2011-01-29 23:28:04
Author: tille
Date: 2011-01-30 10:00:53 + (Sun, 30 Jan 2011)
New Revision: 5801
Added:
trunk/packages/mothur/trunk/debian/upstream-metadata.yaml
Log:
Added upstream-metadata.yaml
Added: trunk/packages/mothur/trunk/debian/upstream-metadata.yaml
:50 +0200
+ http://www.mothur.org/wiki/Mothur_manual
+
+ -- Andreas Tille ti...@debian.org Sun, 30 Jan 2011 00:21:42 +0100
Added: trunk/packages/mothur/trunk/debian/README.Source
===
--- trunk/packages/mothur/trunk/debian
Spooner w...@eaglegenomics.com
+Maintainer: Debian Med Packaging Team
debian-med-packag...@lists.alioth.debian.org
+Uploaders: William Spooner w...@eaglegenomics.com,
+ Andreas Tille ti...@debian.org
Build-Depends: debhelper (= 7.0.50~), libbz2-dev
Standards-Version: 3.9.1
-Homepage: http
)
@@ -0,0 +1,15 @@
+Author: Andreas Tille ti...@debian.org
+Date: 2011-01-30
+Dscription: There is no need to link against lncurses because its symbols are
not used
+--- mothur-1.14.0.orig/makefile
mothur-1.14.0/makefile
+@@ -54,8 +54,7 @@
+ ifeq ($(strip $(USEREADLINE)),yes)
+ CXXFLAGS
Author: tille
Date: 2011-01-30 12:04:40 + (Sun, 30 Jan 2011)
New Revision: 5816
Added:
trunk/packages/wgs-assembler/trunk/debian/watch
Log:
Added watch file
Added: trunk/packages/wgs-assembler/trunk/debian/watch
===
---
or directories which have a
-# different copyright/license attached and list them here.
+Files: debian/*
+Copyright: © 2011 William Spooner w...@eaglegenomics.com,
+ Andreas Tille ti...@debian.org,
Modified: trunk/packages/wgs-assembler/trunk/debian/docs
Author: tille
Date: 2011-01-30 13:25:14 + (Sun, 30 Jan 2011)
New Revision: 5820
Modified:
trunk/packages/wgs-assembler/trunk/debian/copyright
Log:
Fixed copyright information, added upstream-metadata.yaml
Modified: trunk/packages/wgs-assembler/trunk/debian/copyright
Author: tille
Date: 2011-01-30 13:59:12 + (Sun, 30 Jan 2011)
New Revision: 5822
Modified:
trunk/packages/vienna-rna/trunk/debian/control
trunk/packages/vienna-rna/trunk/debian/rules
Log:
Some minor changes to fix lintian warnings
Modified:
Author: tille
Date: 2011-01-30 14:26:33 + (Sun, 30 Jan 2011)
New Revision: 5824
Added:
trunk/packages/bowtie/trunk/debian/doc-base
Modified:
trunk/packages/bowtie/trunk/debian/bowtie-build.1
trunk/packages/bowtie/trunk/debian/control
Log:
added doc-base control file
Modified:
is:
-
-Copyright (C) 2010 Steffen Moeller moel...@debian.org
-
-and is licensed under the same license.
-
+Files: debian/*
+Copyright: © 2010 Files: *
+Copyright: © 2011 Steffen Moeller moel...@debian.org,
+ Yask Gupta yask.gupt...@gmail.com
+ © 2011 Andreas Tille ti...@debian.org
...@gmail.com Wed, 06 Feb 2008 13:11:58 +0100
-
-tm-align (20050601-1) unstable; urgency=low
-
* Initial release (Closes: #447505)
- -- Steffen Moeller moel...@debian.org Sun, 21 Oct 2007 17:11:53 +0200
-
+ -- Andreas Tille ti...@debian.org Sun, 30 Jan 2011 22:49:21 +0100
Modified: trunk
)
+++ trunk/packages/tm-align/trunk/debian/control2011-01-30 21:59:26 UTC
(rev 5835)
@@ -6,7 +6,7 @@
Uploaders: Steffen Moeller moel...@debian.org,
Tim Booth tbo...@ceh.ac.uk,
Andreas Tille ti...@debian.org
-Build-Depends: debhelper (= 7), gfortran
+Build-Depends: debhelper (= 7.1
...@debian.org and
-is licensed under the GPL, see `/usr/share/common-licenses/GPL'.
-
+Files: debian/*
+Copyright: © 2007 Steffen Moeller moel...@debian.org
+Copyright: © 2011 Tim Booth tbo...@ceh.ac.uk,
+ Andreas Tille ti...@debian.org
+License: The Debian packaging is licensed under
Author: tille
Date: 2011-01-30 22:15:47 + (Sun, 30 Jan 2011)
New Revision: 5837
Removed:
trunk/packages/tm-align/trunk/debian/README.Debian
Log:
Remove outdated information
Deleted: trunk/packages/tm-align/trunk/debian/README.Debian
by Craig Small in version 0.37 of dh-make.
-#
-# Modified to make a template file for a multi-binary package with separated
-# build-arch and build-indep targets by Bill Allombert 2001
+# debian/rules for vienna-rna
+# Andreas Tille ti...@debian.org
+# GPL
# Uncomment this to turn on verbose
/do_not_configure_g2-0.70.patch
(rev 0)
+++
trunk/packages/vienna-rna/trunk/debian/patches/do_not_configure_g2-0.70.patch
2011-01-31 19:52:50 UTC (rev 5839)
@@ -0,0 +1,45 @@
+Author: Andreas Tille ti...@debian.org
+Date: 2011-01-31
+Description: The g2 library
Author: tille
Date: 2011-01-31 20:22:11 + (Mon, 31 Jan 2011)
New Revision: 5840
Modified:
trunk/packages/vienna-rna/trunk/debian/control
Log:
Added Build-Depends for creating pdf from texinfo
Modified: trunk/packages/vienna-rna/trunk/debian/control
in the source of
+RNAforester is not used but the package is linked against the
+Debian packaged version
+
+ -- Andreas Tille ti...@debian.org Tue, 01 Feb 2011 08:31:47 +0100
Modified: trunk/packages/vienna-rna/trunk/debian/control
Author: tille
Date: 2011-02-01 18:48:37 + (Tue, 01 Feb 2011)
New Revision: 5843
Added:
trunk/packages/vienna-rna/trunk/debian/b2ct.1
Modified:
trunk/packages/vienna-rna/trunk/debian/control
trunk/packages/vienna-rna/trunk/debian/rules
Author: tille
Date: 2011-02-01 19:39:33 + (Tue, 01 Feb 2011)
New Revision: 5845
Modified:
trunk/packages/vienna-rna/trunk/debian/patches/fix_RNAlib_info.patch
trunk/packages/vienna-rna/trunk/debian/patches/fix_manual_pages.patch
Log:
Fix texinfo properly
Modified:
Author: tille
Date: 2011-02-01 21:16:59 + (Tue, 01 Feb 2011)
New Revision: 5846
Modified:
trunk/packages/vienna-rna/trunk/debian/rules
Log:
Finally get valid manpages out of perldoc
Modified: trunk/packages/vienna-rna/trunk/debian/rules
Author: tille
Date: 2011-02-01 21:34:13 + (Tue, 01 Feb 2011)
New Revision: 5847
Added:
trunk/packages/tm-align/trunk/debian/watch
Modified:
trunk/packages/tm-align/trunk/debian/get-orig-source
Log:
Added watch file, rewrote get-orig-source based on changed upstream release
policy
Author: tille
Date: 2011-02-01 21:42:16 + (Tue, 01 Feb 2011)
New Revision: 5849
Modified:
trunk/packages/tm-align/trunk/debian/install
trunk/packages/tm-align/trunk/debian/manpages
trunk/packages/tm-align/trunk/debian/rules
Log:
Include TMscore into packaging - needs to be added to
Author: tille
Date: 2011-02-02 13:04:46 + (Wed, 02 Feb 2011)
New Revision: 5857
Added:
trunk/packages/bowtie/tags/
trunk/packages/bowtie/tags/0.12.7-1/
Log:
0.12.7-1
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Author: tille
Date: 2011-02-02 14:44:43 + (Wed, 02 Feb 2011)
New Revision: 5858
Added:
trunk/packages/tm-align/trunk/debian/source/
trunk/packages/tm-align/trunk/debian/source/format
Log:
Source format 3.0 (quilt)
Added: trunk/packages/tm-align/trunk/debian/source/format
) UNRELEASED; urgency=low
+
+ * Do not give a pointer to non existing info pages in manpages
+
+ -- Andreas Tille ti...@debian.org Wed, 02 Feb 2011 16:08:51 +0100
+
bowtie (0.12.7-1) unstable; urgency=low
* Initial release (Closes: #604940)
Modified: trunk/packages/bowtie/trunk/debian/rules
on the mailing list
+
+ [Andreas Tille]
+ * New upstream beta release
* Source Format 3.0 (quilt)
-- Andreas Tille ti...@debian.org Mon, 24 Jan 2011 14:52:31 +0100
-r-other-mott-happy (2.2.hbrem~beta-2) UNRELEASED; urgency=low
+r-other-mott-happy (2.1-5) unstable; urgency=low
- * patch
Author: tille
Date: 2011-02-02 16:29:41 + (Wed, 02 Feb 2011)
New Revision: 5862
Modified:
trunk/packages/mosaik-aligner/trunk/debian/rules
Log:
Do not link to non existent texinfo
Modified: trunk/packages/mosaik-aligner/trunk/debian/rules
Author: tille
Date: 2011-02-02 16:39:52 + (Wed, 02 Feb 2011)
New Revision: 5863
Added:
trunk/packages/probalign/trunk/debian/upstream-metadata.yaml
Log:
Bibliographic information
Added: trunk/packages/probalign/trunk/debian/upstream-metadata.yaml
release (Closes: #611828)
-- Andreas Tille ti...@debian.org Wed, 02 Feb 2011 15:45:54 +0100
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Author: tille
Date: 2011-02-02 22:15:35 + (Wed, 02 Feb 2011)
New Revision: 5866
Modified:
trunk/packages/vienna-rna/trunk/debian/rules
Log:
Alex's code to obtain the manpages via perldoc is way better than mine - I
stupidly overlooked the proper option, thanks for pointing this up Alex!;
sequences can be different. The TM-align
+ will first find the best equivalent residues of two proteins based on
+ the structure similarity and then output a TM-score. The TM-score values
+ in both programs have the same definition.
+
+ -- Andreas Tille ti...@debian.org Sun, 30
,
+ Dominique Belhachemi domi...@debian.org,
+ Pjotr Prins pjotr.deb...@thebird.nl,
+ Andreas Tille ti...@debian.org
Standards-Version: 3.9.1
Build-Depends: debhelper (= 7), libncurses-dev, libreadline-dev,
mpi-default-dev, quilt
Homepage: http://mrbayes.csit.fsu.edu/
Added: trunk/packages/mrbayes/trunk
a particular interest in MPI and as such branched
-that effort into a second package of the same source tree.
+The command reference can be downloaded here
+ http://mrbayes.sourceforge.net/commref_mb3.1.pdf
--- Steffen Moeller moel...@debian.org Mon, 01 Nov 2010 01:31:10 +0100
+ -- Andreas
Author: tille
Date: 2011-02-03 15:58:49 + (Thu, 03 Feb 2011)
New Revision: 5877
Added:
trunk/packages/mrbayes/trunk/debian/watch
Log:
Added watch file
Added: trunk/packages/mrbayes/trunk/debian/watch
===
---
-licenses/GPL'.
+Files: debian/*
+Copyright: © 2006 Fernando Ribeiro ferna...@staff.nerdgroup.org
+ © 2011 Andreas Tille ti...@debian.org
+License: The packaging is licensed under the same conditions as the
+ software itself.
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