Re: Is it possible to use ben offline?

2024-05-15 Thread Charles Plessy
> On 5/14/24 2:17 AM, Charles Plessy wrote: > > I see that ben has a --mirror option. But will it work if the "mirror" > > is a local archive containing only Bioconductor packages? Le Tue, May 14, 2024 at 05:24:39AM +0200, Sebastiaan Couwenberg a écrit : > > `b

Is it possible to use ben offline?

2024-05-13 Thread Charles Plessy
s local archive should be seen as an additional layer on top of the official mirror", like a PPA or a backports suite? I would appreciate if you could give me some hints about feasibility and tutorials if there are some. Have a nice day! Charles -- Charles Plessy

Bug#1054657: Transition seems to be blocked (Was: Bug#1054657: transition: r-bioc-biocgenerics)

2023-12-08 Thread Charles Plessy
Hi Graham and Andreas, Le Thu, Dec 07, 2023 at 01:37:02PM -0100, Graham Inggs a écrit : > > Also, why do r-bioc-netsam and r-bioc-org.hs.eg.db not even appear on > the tracker? I do not know for r-bioc-netsam, but for r-bioc-org.hs.eg.db and similar packages, it is because it is an "annotation

Bug#1054657: transition: r-bioc-biocgenerics

2023-11-27 Thread Charles Plessy
ake place in April or May 2024. As time passes I am starting to wonder if we should just skip the current one... Have a nice day, Charles -- Charles Plessy Nagahama, Yomitan, Okinawa, Japan Debian Med packaging team http://www.debian.org/devel/debian-med Tooting

Bug#1054657: transition: r-bioc-biocgenerics

2023-11-10 Thread Charles Plessy
Le Fri, Nov 10, 2023 at 11:30:13PM +0100, Sebastian Ramacher a écrit : > > Can you please clarify whether you are talking about new dependencies or > reverse dependencies above? Thanks. Hi Sebastian, I am talking about the reverse-dependencies of the packages that we need to upload to NEW.

Bug#1054657: transition: r-bioc-biocgenerics

2023-11-10 Thread Charles Plessy
omplete the checks and package the new dependencies and submit the to NEW next week. I suppose that we just have to go through he whole process and notify you when it is done? Have a good week-end, Charles -- Charles Plessy Nagahama, Yomitan, Okinawa, Japan Debian M

Bug#1054657: transition: r-bioc-biocgenerics

2023-11-09 Thread Charles Plessy
d if you think that next time you need to monitor our monitoring, I can for instance toot regularly under a pre-decided hashtag about our preparation and you can review it at the time of the transition, (in about 5 months; the clock is ticking). Have a nice day, Charles -- Charles Plessy

Bug#1054657: transition: r-bioc-biocgenerics

2023-11-07 Thread Charles Plessy
u if and how much the transition will require the processing of packages through the NEW queue. Have a nice day, Charles -- Charles Plessy Nagahama, Yomitan, Okinawa, Japan Debian Med packaging team http://www.debian.org/devel/debian-med Tooting from work,

Bug#1054657: transition: r-bioc-biocgenerics

2023-11-02 Thread Charles Plessy
eclare a reverse-dependency to an existing Bioc package that we ship in Debian. Therefore, I do not expect that this transition will require NEW processing. https://bioconductor.org/news/bioc_3_18_release/ Graham, please let us know when we can start uploading. Have a nice day,

Bug#1054657: transition: r-bioc-biocgenerics

2023-11-01 Thread Charles Plessy
e dependency chain will change again this time. With this in mind, can I ask why is it necessary to upload to experimental first? We never had to do it before, and it is a lot of extra work. Have a nice day, Charles -- Charles Plessy Nagahama, Yomitan, Okinawa, Japan De

Re: Proposal: Repository for fast-paced package backports

2019-01-02 Thread Charles Plessy
sheds") for solving your own problem :) Have a nice day, Charles -- Charles Plessy Tsurumi, Kanagawa, Japan Debian Med packaging team http://www.debian.org/devel/debian-med Tooting from work, https://mastodon.technology/@charles_plessy Tootin

Bug#868558: Would you please not upload new r-* packages until transition is finalised (Re: r-api-3.4)

2017-10-12 Thread Charles Plessy
without uploads is needed if we want to see the r-* packages in Testing. Note that according to the package tracker, r-base will be part of another transition soon. So it may be best to do the 5-day break before it starts. Have a nice day, Charles -- Charles Plessy Debian Med packaging team

Bug#859255: binNMU needed for more R packages.

2017-04-30 Thread Charles Plessy
> On Sat, Apr 1, 2017 at 15:24:53 +0900, Charles Plessy wrote: > > > > as a follow-up to #858183, I looked at which other R Bioconductor > > packages were broken by R 3.3.3-1, and it seems that the previous round > > of binNMUs did not repair some of them. > &g

Bug#859255: binNMU needed for more R packages.

2017-04-29 Thread Charles Plessy
Le Sat, Apr 22, 2017 at 11:25:23PM +0900, Charles Plessy a écrit : > > Actually the rebuild was not enough and today I finally understood that > r-bioc-xvector also needs a rebuild (despite its own regression tests > did not fail). Unfortunately R in Sid is now ahead of Testing, and

Bug#859255: binNMU needed for more R packages.

2017-04-22 Thread Charles Plessy
> > Le Sat, Apr 01, 2017 at 03:24:53PM +0900, Charles Plessy a écrit : > >> > >> as a follow-up to #858183, I looked at which other R Bioconductor > >> packages were broken by R 3.3.3-1, and it seems that the previous round > >> of binNMUs did not

Bug#859255: binNMU needed for more R packages.

2017-04-12 Thread Charles Plessy
Le Sat, Apr 01, 2017 at 03:24:53PM +0900, Charles Plessy a écrit : > > as a follow-up to #858183, I looked at which other R Bioconductor > packages were broken by R 3.3.3-1, and it seems that the previous round > of binNMUs did not repair some of them. > nmu r-bioc-rsamtools_1.26

Bug#859255: binNMU needed for more R packages.

2017-04-01 Thread Charles Plessy
nomicalignments_1.10.0-1 . ANY . -m "Rebuild for R 3.3.3." Note to debian-science: there are also R CRAN packages that fail with R 3.3.3, (r-cran-lubridate, r-cran-spam), but I am not yet sure if a binNMU is enough. Have a nice day, Charles -- Charles Plessy Debian Med packaging team

Bug#858183: binNMU needed for r-bioc- packages broken by R 3.3.3.

2017-03-19 Thread Charles Plessy
.1-2 . ANY . -m "Rebuild for R 3.3.3." nmu r-bioc-iranges_2.8.1-1-m . ANY . "Rebuild for R 3.3.3." nmu r-bioc-genomicranges_1.26.2-1 . ANY -m "Rebuild for R 3.3.3." Otherwise I can prepare a more extensive list of packages to rebuild. Cheers, -- Charles Plessy Debian Med packaging team, http://www.debian.org/devel/debian-med Tsurumi, Kanagawa, Japan

Bug#789214: jessie-pu: package cloud-init/0.7.6~bzr976-2 -> -3

2015-11-12 Thread Charles Plessy
Le Thu, Nov 12, 2015 at 03:19:54PM +0100, Thomas Goirand a écrit : > > Charles, do you have time to do the update of cloud-init in Sid? Not this week, but maybe the next. Cheers, -- Charles

Bug#789214: jessie-pu: package cloud-init/0.7.6~bzr976-2 -> -3

2015-11-11 Thread Charles Plessy
ad, which is now seriously outdated. Regarless of this bug, there will be the demand for a backport of the version in Squeeze, which will satisfy Jessie users almost as well as a stable update. Have a nice day, -- Charles Plessy Tsurumi, Kanagawa, Japan

Bug#789214: Updated package of cloud-init?

2015-09-06 Thread Charles Plessy
Le Thu, Sep 03, 2015 at 12:59:58PM +0900, Charles Plessy a écrit : > Le Wed, Sep 02, 2015 at 11:12:26PM +0200, Julien Cristau a écrit : > > > > > What you do in sid has little to do with the amount of free time I (or > > anyone else, apparently) have to look at an inva

Bug#789214: Updated package of cloud-init?

2015-09-02 Thread Charles Plessy
Have a nice day, -- Charles Plessy Tsurumi, Kanagawa, Japan

Bug#789214: jessie-pu: package cloud-init/0.7.6~bzr976-2 - -3

2015-08-18 Thread Charles Plessy
: Note, that I have tested on jessie, the packages that zigo have uploaded in sid (0.7.6~bzr976-4) and it works as expected. Can we go ahead with the proposed stable update ? Have a nice day, Charles -- Charles Plessy Tsurumi, Kanagawa, Japan

Bug#788283: jessie-pu: package r-cran-rcurl/1.95-4.3-1+deb8u1

2015-06-09 Thread Charles Plessy
:59.0 +0900 +++ r-cran-rcurl-1.95-4.3/debian/changelog 2015-06-09 21:54:48.0 +0900 @@ -1,3 +1,10 @@ +r-cran-rcurl (1.95-4.3-1+deb8u1) jessie; urgency=medium + + * Team upload. + * Build-Depend on libcurl4-openssl-dev only (Closes: #786473). + + -- Charles Plessy ple

Bug#777090: unblock: bowtie/1.1.1-2

2015-02-04 Thread Charles Plessy
2015-02-03 10:45:22.0 +0900 @@ -1,3 +1,10 @@ +bowtie (1.1.1-2) unstable; urgency=high + + * Team upload. + * Install missing commands. Closes: #776881. + + -- Charles Plessy ple...@debian.org Tue, 03 Feb 2015 10:44:39 +0900 + bowtie (1.1.1-1) unstable; urgency=medium * New upstream

Bug#774142: unblock: mime-support/3.58

2014-12-29 Thread Charles Plessy
Package: release.debian.org Severity: normal User: release.debian@packages.debian.org Usertags: unblock Please unblock package mime-support to fix CVE-2014-0666 in Jessie. unblock mime-support/3.58 Have a nice day, and a BIG THANK YOU for your outstanding work. -- Charles Plessy

Re: First autoremovals happen in about 8 days

2013-10-08 Thread Charles Plessy
(and the automated autopkg testing) are a big step forward. Let me take this opportunity to thank to the Release team for this ! Have a nice day, -- Charles Plessy Debian Med packaging team, http://www.debian.org/devel/debian-med Tsurumi, Kanagawa, Japan -- To UNSUBSCRIBE, email to debian

Bug#723064: pu: package emboss-explorer/2.2.0-7+deb7u1

2013-09-16 Thread Charles Plessy
Le Mon, Sep 16, 2013 at 06:00:25PM +0100, Jonathan Wiltshire a écrit : On 2013-09-16 13:48, Jonathan Wiltshire wrote: Please wait for the rejection confirmation mail, and then upload again This happened, and I flagged it for acceptance. Thanks a lot ! It was a neat and simple process.

[SRU] emboss-explorer (2.2.0-7deb7u1) stable; urgency=low

2013-09-15 Thread Charles Plessy
and higer (Closes: #722982). + + -- Charles Plessy ad...@ip-172-31-27-246.ap-northeast-1.compute.internal Sun, 15 Sep 2013 05:16:46 + + emboss-explorer (2.2.0-7) unstable; urgency=low * debian/emboss-explorer.postinst: reloads apache. diff -u emboss-explorer-2.2.0/debian/patches/00list emboss

Bug#723064: pu: package emboss-explorer/2.2.0-7+deb7u1

2013-09-15 Thread Charles Plessy
@@ +emboss-explorer (2.2.0-7deb7u1) stable; urgency=low + + * Patch to use with EMBOSS 6.4 and higer (Closes: #722982). + + -- Charles Plessy ad...@ip-172-31-27-246.ap-northeast-1.compute.internal Sun, 15 Sep 2013 05:16:46 + + emboss-explorer (2.2.0-7) unstable; urgency=low * debian/emboss

Bug#700152: unblock: boxshade/3.3.1-7+wheezy1

2013-02-08 Thread Charles Plessy
: #700088. + + -- Charles Plessy ple...@debian.org Sat, 09 Feb 2013 11:57:21 +0900 + boxshade (3.3.1-7) unstable; urgency=low * debian/install: Make sure boxshade executable will be installed diff -Nru boxshade-3.3.1/debian/patches/remove-newlines.patch boxshade-3.3.1/debian/patches/remove

Bug#662513: RM: emboss/6.3.1-6

2012-12-11 Thread Charles Plessy
Le Wed, Dec 12, 2012 at 02:17:46AM +0100, intrigeri a écrit : Hi Charles, Charles Plessy wrote (19 Mar 2012 03:36:29 GMT) : On Mon, 2012-03-05 at 14:28 +0900, Charles Plessy wrote: there is an annoying non-free file in emboss, and resolving that problem delays my other works

Re: Bug#688630: Bug#688630: t-coffee-doc: empty package

2012-10-21 Thread Charles Plessy
not related to the release. I propose to either ignore the emptiness of t-coffee-doc, or to make an upload to testing-proposed-updates, where the t-coffee-doc package would be discarded. Please let us know if you would like this to happen. Have a nice day, -- Charles Plessy Debian Med packaging team

Re: Possible release note for systems running PHP through CGI.

2012-08-20 Thread Charles Plessy
I do with #674089 ? I can reassign it to php5-cgi so that your next upload closes it, or do we still need release notes ? Have a nice day, -- Charles Plessy Tsurumi, Kanagawa, Japan -- To UNSUBSCRIBE, email to debian-release-requ...@lists.debian.org with a subject of unsubscribe. Trouble

Possible release note for systems running PHP through CGI.

2012-08-18 Thread Charles Plessy
that this is not the proper solution. Have a nice day, -- Charles Plessy Tsurumi, Kanagawa, Japan -- To UNSUBSCRIBE, email to debian-release-requ...@lists.debian.org with a subject of unsubscribe. Trouble? Contact listmas...@lists.debian.org Archive: http://lists.debian.org/20120819021726.gc20

Re: Collaborative maintenance of mime-support (was Re: Using FreeDesktop MIME entries directly in mime-support).

2012-07-25 Thread Charles Plessy
=uploads (And my apologises for messing with the changelog for my first upload of a high-priority package... in contrary of what is written, it was really uploaded ot experimental...) Have a nice day, -- Charles Plessy Tsurumi, Kanagawa, Japan -- To UNSUBSCRIBE, email to debian-release-requ

Collaborative maintenance of mime-support (was Re: Using FreeDesktop MIME entries directly in mime-support).

2012-07-16 Thread Charles Plessy
, Charles Plessy ple...@debian.org, I propose the following action plan. 0) We subscribe to the PTS (done for me). 1) Upload to experimental an adopted package with the updated maintainer and uploaders list, the VCS fields updated, and the patch for #497779 applied. 2) Install in Alioth's

Using FreeDesktop MIME entries directly in mime-support (Re: Fixing the mime horror ini Debian).

2012-07-15 Thread Charles Plessy
), and I wrote much of the MimeTypesSupport page on the Debian wiki (http://wiki.debian.org/MimeTypesSupport). Have a nice day, -- Charles Plessy Tsurumi, Kanagawa, Japan -- To UNSUBSCRIBE, email to debian-release-requ...@lists.debian.org with a subject of unsubscribe. Trouble? Contact listmas

Seasonal dilemna with EMBOSS.

2012-06-23 Thread Charles Plessy
are supported until the end of Wheezy anyway. For the sake of looking fresh at the release, I would have a mild preference for obtaining an exception for 6.5.0. Have a nice Sunday, -- Charles Plessy Debian Med packaging team, http://www.debian.org/devel/debian-med Tsurumi, Kanagawa, Japan

Bug#675126: RM: ampliconnoise [ia64] -- ROM; Unsatisfied dependance on mafft.

2012-05-29 Thread Charles Plessy
that the version of mafft currently in Unstable can migrate to Testing. Have a nice day, -- Charles Plessy Debian Med packaging team, http://www.debian.org/devel/debian-med Tsurumi, Kanagawa, Japan -- To UNSUBSCRIBE, email to debian-release-requ...@lists.debian.org with a subject of unsubscribe. Trouble

Bug#662513: RM: emboss/6.3.1-6

2012-03-18 Thread Charles Plessy
On Mon, 2012-03-05 at 14:28 +0900, Charles Plessy wrote: there is an annoying non-free file in emboss, and resolving that problem delays my other works on this package. Le Tue, Mar 13, 2012 at 08:48:46PM +, Adam D. Barratt a écrit : Is there a bug report for that? I couldn't see

Bug#662513: RM: emboss/6.3.1-6

2012-03-05 Thread Charles Plessy
Le Mon, Mar 05, 2012 at 11:51:35AM +, Tim Booth a écrit : I'll be up at the EBI in a couple of weeks. Is there anything I can do to try and persuade them to grant an acceptable license or has this already been tried? EMBOSS is a software package that I still consider to be very

Bug#662513: RM: emboss/6.3.1-6

2012-03-04 Thread Charles Plessy
be needed for Stable). Cheers, -- Charles Plessy Debian Med packaging team Tsurumi, Kanagawa, Japan -- To UNSUBSCRIBE, email to debian-release-requ...@lists.debian.org with a subject of unsubscribe. Trouble? Contact listmas...@lists.debian.org Archive: http://lists.debian.org

[Debian-med-packaging] Bug#661426: Bug#661426: FTBFS

2012-02-28 Thread Charles Plessy
of people who want to help the release ? I have briefly checked two other embassy-* packages and they built fine in the same chroot where embassy-domalign fails. Have a nice day (and thanks for the QA). -- Charles Plessy Debian Med packaging team Tsurumi, Kanagawa, Japan

Re: [Debian-med-packaging] sra-sdk: should it be in Debian?

2012-01-03 Thread Charles Plessy
it is a governmental agency, I suppose it will not last for long… Have a nice day, and a happy new year. -- Charles Plessy Debian Med packaging team, http://www.debian.org/devel/debian-med Tsurumi, Kanagawa, Japan -- To UNSUBSCRIBE, email to debian-release-requ...@lists.debian.org with a subject

Re: [SRU] non-free/clustalw and non-free/clustalx relicensed to LGPL-3+.

2011-07-17 Thread Charles Plessy
Le Sat, Jul 16, 2011 at 11:06:08PM +0200, Philipp Kern a écrit : On Thu, Apr 07, 2011 at 10:33:06AM +0900, Charles Plessy wrote: I understand your decision for clustalx. I think that there would still be a benefit to have clustalw in main for Squeeze, in particular for the generation

Re: [SRU] perlprimer

2011-06-26 Thread Charles Plessy
Le Sat, Apr 30, 2011 at 01:21:25AM +0900, Charles Plessy a écrit : Le Fri, Apr 29, 2011 at 04:59:03PM +0100, Adam D. Barratt a écrit : On Sun, 2011-03-20 at 18:46 +0900, Charles Plessy wrote: http://git.debian.org/?p=debian-med/perlprimer.git;a=commitdiff;h=upstream/1.1.20;hp=upstream

Uploads durign the Perl 5.12 transition ?

2011-05-08 Thread Charles Plessy
Hello everybody, I am working on a package that has recently been binNMUed for the Perl 5.12 transition, libbio-samtools-perl. Do I have to refrain to upload any update until the transition is over ? Have a nice day, -- Charles Plessy Debian Med packaging team, http://www.debian.org/devel

Re: [SRU] perlprimer

2011-04-29 Thread Charles Plessy
Le Fri, Apr 29, 2011 at 04:59:03PM +0100, Adam D. Barratt a écrit : On Sun, 2011-03-20 at 18:46 +0900, Charles Plessy wrote: http://git.debian.org/?p=debian-med/perlprimer.git;a=commitdiff;h=upstream/1.1.20;hp=upstream/1.1.19 Which sections of the diff are relevant for the API update

Re: [SRU] non-free/clustalw and non-free/clustalx relicensed to LGPL-3+.

2011-04-06 Thread Charles Plessy
of entirely Free Squeeze derivatives for science. While we offer a large number of alternatives, Clustal W is the reference in its field. Have a nice day, -- Charles Plessy Debian Med packaging team, http://www.debian.org/devel/debian-med Tsurumi, Kanagawa, Japan -- To UNSUBSCRIBE, email to debian

Re: Bug#619990: developers-reference: Update of merkel.d.o URLs

2011-03-30 Thread Charles Plessy
Le Wed, Mar 30, 2011 at 07:55:39AM +0200, Raphael Hertzog a écrit : On Wed, 30 Mar 2011, Charles Plessy wrote: If you want to see more details, you can look it up on -filenamemerkel:/org/ftp-debian-org;/testing/update_out//filename (or -in filenamemerkel:~aba/testing/update_out/filename

Re: Bug#619990: developers-reference: Update of merkel.d.o URLs

2011-03-29 Thread Charles Plessy
tag 619990 + patch thanks Le Tue, Mar 29, 2011 at 09:09:55AM +0200, Raphael Hertzog a écrit : On Tue, 29 Mar 2011, Charles Plessy wrote: - For Britney, I do not find the equivalent on ries.d.o for the following: merkel:/org/ftp-debian-org;/testing/update_out/ merkel:~aba/testing

[SRU] non-free/clustalw and non-free/clustalx relicensed to LGPL-3+.

2011-03-20 Thread Charles Plessy
be from 2.0.12-1 to 2.1+lgpl-2. For clustalx, however it would be from 1.83-4 to 2.1+lgpl-1. This corresponds to the replacement of Motif by Qt for the GUI. What is your opinion ? Have a nice Sunday, -- Charles Plessy Debian Med packaging team, http://www.debian.org/devel/debian-med Tsurumi

[SRU] perlprimer

2011-03-20 Thread Charles Plessy
, -- Charles Plessy Debian Med packaging team, http://www.debian.org/devel/debian-med Tsurumi, Kanagawa, Japan -- To UNSUBSCRIBE, email to debian-release-requ...@lists.debian.org with a subject of unsubscribe. Trouble? Contact listmas...@lists.debian.org Archive: http://lists.debian.org/20110320094615

Re: [Debian-med-packaging] Bug#611008: does not run with current version of R in squeeze

2011-01-25 Thread Charles Plessy
that a rebuild is necessary ? The package seems to work on my system, and has already been rebuilt against R 2.10 as I explained in http://bugs.debian.org/611008#10 Cheers, -- Charles Plessy Debian Med packaging team, http://www.debian.org/devel/debian-med Tsurumi, Kanagawa, Japan

Bug#592721: unblock: embassy-* and emboss.

2010-12-23 Thread Charles Plessy
, but not RC-buggy, so I would recommend to apply the same rules as for any other package. Have a nice day, -- Charles Plessy Debian Med packaging team, http://www.debian.org/devel/debian-med Strasbourg, France -- To UNSUBSCRIBE, email to debian-release-requ...@lists.debian.org with a subject

Bug#592721: unblock: embassy-* and emboss.

2010-12-14 Thread Charles Plessy
embassy-domalign/0.1.0+20100721-2 unblock embassy-domsearch/0.1.0++20100721-2 unblock embassy-phylip/3.69+20100721-2 Have a nice day, -- Charles Plessy Debian Med packaging team, http://www.debian.org/devel/debian-med Tsurumi, Kanagawa, Japan -- To UNSUBSCRIBE, email to debian-release-requ

Bug#603530: RM: bwa/0.5.8a-1

2010-11-14 Thread Charles Plessy
is to remove it. In case you wonder why I have not raised it earlier, I indeed added debian-release@lists.debian.org as X-Debbugs-Cc when reporting (through reportbug), but for an unknown reason, the message was never delivered. Have a nice day, -- Charles Plessy, Debian Med team, Tsurumi, Kanagawa

Re: [Debian-med-packaging] Bug#600997: imagej: cannot quit imagej when an image was changed

2010-10-27 Thread Charles Plessy
Le Wed, Oct 27, 2010 at 06:58:05PM +0200, Mehdi Dogguy a écrit : On 27/10/2010 17:48, Charles Plessy wrote: I attached the debdiff. Would it be suitable for an upload to testing-proposed-updates ? Version 1.44e, still affected, is already in Unstable… It looks ok but the changelog

Bug#592721: unblock: embassy-* and emboss.

2010-10-04 Thread Charles Plessy
would cause upgrade difficulties to Lenny users. Cheers, -- Charles Plessy Debian Med packaging team, http://www.debian.org/devel/debian-med Tsurumi, Kanagawa, Japan -- To UNSUBSCRIBE, email to debian-release-requ...@lists.debian.org with a subject of unsubscribe. Trouble? Contact listmas

Bug#597989: RM: eucalyptus/1.6.2-2

2010-09-25 Thread Charles Plessy
Le Sat, Sep 25, 2010 at 09:25:06AM +0100, Adam D. Barratt a écrit : On Sat, 2010-09-25 at 10:24 +0900, Charles Plessy wrote: eucalyptus/1.6.2-2 has accumulated a lot of RC bugs, depends on a version of a java library that is not available anymore in Testing, You mean it's uninstallable

Bug#597989: RM: eucalyptus/1.6.2-2

2010-09-24 Thread Charles Plessy
the end of Debian's support for Squeeze. Version 2.0.0 has been released a couple of weeks ago and it is on this one that we will concentrate our efforts. Please remove eucalyptus/1.6.2-2 from Testing. Thanks for all your efforts, -- Charles Plessy Debian pkg-eucalyptus team http

Re: Bug#595878: wordnet: FTBFS in squeeze: /bin/bash: aclocal-1.10: command not found

2010-09-08 Thread Charles Plessy
and the build was stopped, in a similar way as on the buildds. How about asking the arm and mips porters to autobuild wordnet on antheil or arnold for arm, and mayer for mipsel, where the RAM is 1 Go or more? Have a nice day, Charles -- Charles Plessy Debian Med packaging team, http

Bug#592721: unblock: embassy-* and emboss.

2010-09-05 Thread Charles Plessy
-phylip 3.69+20100721-1~, emboss 6.3.1-5~’ to the libajax6, libnucleus6 and emboss-lib packages, and keep the versions up to date when upstream will release a new version. This will avoid users making mixtures that are not supported. Cheers, -- Charles Plessy Debian Med packaging team, http

Bug#592721: unblock: embassy-* and emboss.

2010-09-04 Thread Charles Plessy
Le Sat, Sep 04, 2010 at 04:38:07PM +0200, Julien Cristau a écrit : On Thu, Aug 12, 2010 at 19:40:22 +0900, Charles Plessy wrote: the embassy packages in Squeeze are built against EMBOSS 6.2, which is not available anymore except in the Debian snapshots. They will not work with EMBOSS 6.1

Bug#592721: unblock: embassy-* and emboss.

2010-09-04 Thread Charles Plessy
Julien, Just remove the embassy packages. This is a perfectly acceptable solution that I accepted in advance in the first email of this thread. -- Charles Plessy Debian Med packaging team, http://www.debian.org/devel/debian-med Tsurumi, Kanagawa, Japan -- To UNSUBSCRIBE, email to debian

Bug#592721: unblock: embassy-* and emboss.

2010-09-04 Thread Charles Plessy
Le Sat, Sep 04, 2010 at 06:50:03PM +0200, Julien Cristau a écrit : On Sun, Sep 5, 2010 at 01:12:20 +0900, Charles Plessy wrote: Just remove the embassy packages. This is a perfectly acceptable solution that I accepted in advance in the first email of this thread. That's not going

Bug#592721: unblock: embassy-* and emboss.

2010-08-18 Thread Charles Plessy
, -- Charles Plessy Debian Med packaging team, http://www.debian.org/devel/debian-med Tsurumi, Kanagawa, Japan -- To UNSUBSCRIBE, email to debian-release-requ...@lists.debian.org with a subject of unsubscribe. Trouble? Contact listmas...@lists.debian.org Archive: http://lists.debian.org

Bug#592721: unblock: embassy-* and emboss.

2010-08-12 Thread Charles Plessy
, -- Charles Plessy Debian Med packaging team http://www.debian.org/devel/debian-med Tsurumi, Kanagawa, Japan -- To UNSUBSCRIBE, email to debian-release-requ...@lists.debian.org with a subject of unsubscribe. Trouble? Contact listmas...@lists.debian.org Archive: http://lists.debian.org

State of the embassy-* packages in Squeeze.

2010-08-10 Thread Charles Plessy
15th, 2011 (or perhaps January 15th, 2011, this is a bit unclear to me). Please let us know your preference, so that I an upload accordingly and send a proper unblock request if needed. Have a nice day, -- Charles Plessy Debian Med packaging team, http://www.debian.org/devel/debian-med Tsurumi

Re: libbio-samtools-perl migrated in testing despite build-dependancy libbam-dev is not available there.

2009-11-18 Thread Charles Plessy
severity 544976 important thanks Le Sun, Nov 15, 2009 at 03:27:04PM +0100, Luk Claes a écrit : Charles Plessy wrote: libbam-dev contains a static library built with -fPIC, and since some people raised concerns about security on -devel, that were not contradicted by the release

libbio-samtools-perl migrated in testing despite build-dependancy libbam-dev is not available there.

2009-11-15 Thread Charles Plessy
close the RC bug on libbam-dev, allowing it to migrate in Testing. This is actually the solution I would favor, because I think I over-reacted when opening this bug, but I would prefer to have your green light before. Have a nice day, -- Charles Plessy Debian Med packaging team, http

Bug#552065: release.debian.org: binNMU for r-cran-* packages for R 2.10.0

2009-10-28 Thread Charles Plessy
Le Fri, Oct 23, 2009 at 09:37:06AM +0200, Philipp Kern a écrit : On Fri, Oct 23, 2009 at 01:42:02PM +0900, Charles Plessy wrote: nmu r-cran-epibasix_1.1-1 . ALL . -m 'Rebuilt against 2.10.0 (new documentation format).' nmu r-other-mott-happy_2.1-4 . ALL . -m 'Rebuilt against 2.10.0 (new

Bug#552065: release.debian.org: binNMU for r-cran-* packages for R 2.10.0

2009-10-22 Thread Charles Plessy
, -- Charles Plessy Debian Med packaging team, http://www.debian.org/devel/debian-med Tsurumi, Kanagawa, Japan -- To UNSUBSCRIBE, email to debian-release-requ...@lists.debian.org with a subject of unsubscribe. Trouble? Contact listmas...@lists.debian.org

Re: Bits from the release team and request for discussion

2009-07-30 Thread Charles Plessy
appreciated. Have a nice day, -- Charles Plessy Tsurumi, Kanagawa, Japan -- To UNSUBSCRIBE, email to debian-release-requ...@lists.debian.org with a subject of unsubscribe. Trouble? Contact listmas...@lists.debian.org

Re: Please allow emboss, embassy-domainatrix, embassy-domalign in Testing.

2009-05-16 Thread Charles Plessy
Le Fri, May 15, 2009 at 09:33:40AM +0200, Adeodato Simó a écrit : + Charles Plessy (Thu, 14 May 2009 22:53:26 +0900): The emboss package version 6 provides the libajax6 and libnucleus6 libraries, that are needed by the latest embassy* packages. All of them are in Unstable. Can you

Please allow emboss, embassy-domainatrix, embassy-domalign in Testing.

2009-05-14 Thread Charles Plessy
Hello, release team. The emboss package version 6 provides the libajax6 and libnucleus6 libraries, that are needed by the latest embassy* packages. All of them are in Unstable. Can you hint them in Testing? Have a nice day, -- Charles Plessy Debian Med packaging team, http://www.debian.org

Re: Please allow biofox 1.1.5-1 in Lenny.

2009-01-28 Thread Charles Plessy
identical packages with cosmetical changes. Anyway, as we say in France, sans rancune (no offense). Have a nice day, -- Charles Plessy Debian Med packaging team, http://www.debian.org/devel/debian-med Tsurumi, Kanagawa, Japan -- To UNSUBSCRIBE, email to debian-release-requ...@lists.debian.org

Re: Please allow biofox 1.1.5-1 in Lenny.

2009-01-27 Thread Charles Plessy
locale/en-US/contents.rdf --- 95973 19 files Have a nice day, -- Charles Plessy Debian Med packaging team, http://www.debian.org/devel/debian-med Tsurumi, Kanagawa, Japan -- To UNSUBSCRIBE, email to debian-release-requ...@lists.debian.org

Re: Please allow biofox 1.1.5-1 in Lenny.

2009-01-27 Thread Charles Plessy
Le Tue, Jan 27, 2009 at 11:36:54AM +, Neil McGovern a écrit : On Tue, Jan 27, 2009 at 07:53:53PM +0900, Charles Plessy wrote: The debhelper change, at this very very late stage in the release. Your previous request was about a month and a half ago. Is there a precise concern? Some

Re: Please allow biofox 1.1.5-1 in Lenny.

2009-01-27 Thread Charles Plessy
Hi Thijs Le Tue, Jan 27, 2009 at 03:11:04PM +0100, Thijs Kinkhorst a écrit : On Tue, January 27, 2009 14:55, Charles Plessy wrote: I was thinking that changes like the one I made would be accepted until Deep freeze, since this is the only planned change of unblock policy that was announced

Please allow biofox 1.1.5-1 in Lenny.

2009-01-24 Thread Charles Plessy
-biofox Architecture: source all Version: 1.1.5-1 Distribution: unstable Urgency: high Maintainer: Debian-Med Packaging Team debian-med-packag...@lists.alioth.debian.org Changed-By: Charles Plessy ple...@debian.org Description: mozilla-biofox - extension of bioinformatics tools to Iceape

Re: [Debian-med-packaging] Bug#509863: epigrass: depends on python-matplotlib

2008-12-28 Thread Charles Plessy
Packaging Team debian-med-packag...@lists.alioth.debian.org -Uploaders: Torsten Werner twer...@debian.org, Varun Hiremath va...@debian.org +Uploaders: Torsten Werner twer...@debian.org, Varun Hiremath va...@debian.org, Charles Plessy ple...@debian.org Build-Depends: debhelper (= 5.0.38), cdbs

Please hint emboss-explorer.

2008-12-14 Thread Charles Plessy
...@gmail.com, Charles Plessy ple...@debian.org -Build-Depends: debhelper (= 5), dpatch +Build-Depends: debhelper (= 7), dpatch Build-Depends-Indep: libparse-recdescent-perl, libmailtools-perl -Standards-Version: 3.7.3 +Standards-Version: 3.8.0 Vcs-Browser: http://svn.debian.org/wsvn/debian-med

drgeo not built, blocking fix of Lenny RC bug #505554.

2008-12-09 Thread Charles Plessy
to be built on Sparc: http://buildd.debian.org/pkg.cgi?pkg=libglade2 Is there anything you can do ? Have a nice day, -- Charles Plessy Tsurumi, Kanagawa, Japan -- To UNSUBSCRIBE, email to [EMAIL PROTECTED] with a subject of unsubscribe. Trouble? Contact [EMAIL PROTECTED]

RC#506892 (mpg321): BTS false positive ?

2008-12-08 Thread Charles Plessy
[dir=back] } Have a nice day, -- Charles Plessy Tsurumi, Kanagawa, Japan -- To UNSUBSCRIBE, email to [EMAIL PROTECTED] with a subject of unsubscribe. Trouble? Contact [EMAIL PROTECTED]

Apt built but not installed on alpha, prevents fixing RC bug in Lenny.

2008-12-08 Thread Charles Plessy
Dear Alpha buildd admins, apt is built on alpha but not installed: http://buildd.debian.org/pkg.cgi?pkg=apt It prevents the propagation of version 0.7.19 to Lenny, which fixes the RC bug http://bugs.debian.org/463030 Can you do something? Have a nice day, -- Charles Plessy Tsurumi, Kanagawa

Suggested removal: yocto-reader (RC bug, depends on remote scripts).

2008-12-06 Thread Charles Plessy
in this email, you can read http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=507579 for more details). Le Thu, Dec 04, 2008 at 10:12:30PM -0800, Walter Landry a écrit : Charles Plessy [EMAIL PROTECTED] wrote: Can you have a look to http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=507579

Suggestion for removal: acl2.

2008-12-03 Thread Charles Plessy
: 1) acl2 is in Etch, so the removal is a regression. 2) The bug is not unfixable. I would nevertheless argue in favor of the removal, for the sake of concentrating efforts on the packages whithout which Debian can not release. Have a nice day, -- Charles Plessy Tsurumi, Kanagawa, Japan

Re: Upload of inkscape_0.46-3 to t-p-u ? (was Re: [inkscape] Impossible to change font if ttf-bitstream-vera is not installed.)

2008-11-12 Thread Charles Plessy
Le Wed, Nov 12, 2008 at 07:24:33AM +0100, Luk Claes a écrit : We want a version number greater than 0.46-2.1 and smaller than 0.46-3 which was not uploaded to the archive yet (otherwise it would be rejected). An example would be 0.46-2.lenny1. Uploaded. -- Charles Plessy Tsurumi, Kanagawa

Re: Upload of inkscape_0.46-3 to t-p-u ? (was Re: [inkscape] Impossible to change font if ttf-bitstream-vera is not installed.)

2008-11-11 Thread Charles Plessy
Le Tue, Nov 11, 2008 at 04:47:02PM +0100, Luk Claes a écrit : Charles Plessy wrote: Le Mon, Oct 27, 2008 at 04:47:26PM +0100, Thomas Viehmann a écrit : Charles Plessy wrote: Many thanks Thomas for the patch. I have forwarded it Upstream for review, in case we can get an official

Upload of inkscape_0.46-3 to t-p-u ? (was Re: [inkscape] Impossible to change font if ttf-bitstream-vera is not installed.)

2008-11-08 Thread Charles Plessy
Le Mon, Oct 27, 2008 at 04:47:26PM +0100, Thomas Viehmann a écrit : Charles Plessy wrote: Many thanks Thomas for the patch. I have forwarded it Upstream for review, in case we can get an official blessing before releasing with the patch. In the absence of a timely answer, I

Re: [inkscape] Impossible to change font if ttf-bitstream-vera is not installed.

2008-10-25 Thread Charles Plessy
/patches/02_uniconvertor_binary_name.dpatch Have a nice day, -- Charles Plessy Tsurumi, Kanagawa, Japan diff -u inkscape-0.46/configure inkscape-0.46/configure --- inkscape-0.46/configure +++ inkscape-0.46/configure @@ -680,6 +680,9 @@ AMTAR am__tar am__untar +INTLTOOL_UPDATE +INTLTOOL_MERGE

Re: Package still shipping its menu entry in /usr/lib/menu.

2008-10-24 Thread Charles Plessy
Le Thu, Oct 23, 2008 at 05:08:02PM +0200, Adeodato Simó a écrit : * Charles Plessy [Wed, 15 Oct 2008 12:42:25 +0900]: I just realised that one of our pakcages, `med-doc', still ships its menu files in /usr/lib/menu. This could be solved by binNMU, but I can also prepare a minimal update

Re: [inkscape] Impossible to change font if ttf-bitstream-vera is not installed.

2008-10-22 Thread Charles Plessy
Le Wed, Oct 22, 2008 at 07:21:44PM +0200, Thomas Viehmann a écrit : Adeodato Simó wrote: Charles, if the fix for this bug is simply adding a depends on ttf-bitstream-vera, then the fix is suitable for lenny, and we'll happily unblock it. Can we have a proper fix, though, please? Bug

[inkscape] Impossible to change font if ttf-bitstream-vera is not installed.

2008-10-21 Thread Charles Plessy
). If you do not like the idea, I propose to submit a patch to the release notes instead. Have a nice day, -- Charles Plessy Tsurumi, Kanagawa, Japan -- To UNSUBSCRIBE, email to [EMAIL PROTECTED] with a subject of unsubscribe. Trouble? Contact [EMAIL PROTECTED]

Rkward fit for the release but unmaintained

2008-10-18 Thread Charles Plessy
in case of problems, the release team could nevertheless consider removing rkward from Lenny. Have a nice day, -- Charles Plessy Debian Med packaging team, Tsurumi, Kanagawa, Japan -- To UNSUBSCRIBE, email to [EMAIL PROTECTED] with a subject of unsubscribe. Trouble? Contact [EMAIL PROTECTED]

Package still shipping its menu entry in /usr/lib/menu.

2008-10-14 Thread Charles Plessy
defer this to Squeeze. Just tell me what you prefer. Have a nice day, -- Charles Plessy Debian Med packaging team, Tsurumi, Kanagawa, Japan -- To UNSUBSCRIBE, email to [EMAIL PROTECTED] with a subject of unsubscribe. Trouble? Contact [EMAIL PROTECTED]

Re: Bug#493840: is sbackup maintained enough to include in lenny?

2008-10-05 Thread Charles Plessy
in this thread http://lists.debian.org/debian-devel/2008/05/msg00356.html Have a nice day, -- Charles Plessy Tsurumi, Kanagawa, Japan -- To UNSUBSCRIBE, email to [EMAIL PROTECTED] with a subject of unsubscribe. Trouble? Contact [EMAIL PROTECTED]

Re: Preparing update of 'mafft' to fix #496366 (grave security bug).

2008-09-04 Thread Charles Plessy
Le Thu, Sep 04, 2008 at 07:36:18AM +0200, Luk Claes a écrit : Please upload. Uploaded. -- Charles Plessy Debian Med packaging team, Tsurumi, Kanagawa, Japan -- To UNSUBSCRIBE, email to [EMAIL PROTECTED] with a subject of unsubscribe. Trouble? Contact [EMAIL PROTECTED]

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