Bug#1055728: Segyio is lagging behind upstream (Was: segyio ftbfs with Python 3.12)

2024-02-21 Thread Andreas Tille
't import the symbols to the std:: > namespace. In general, the headers Standard C++ imports from Standard C > snips the .h and prefixes c, so stdint.h -> cstdint, stdio.h -> cstdio, etc. > > -- Tino Didriksen > > > On Wed, 21 Feb 2024 at 11:16, Andreas Tille wrote: >

Bug#1060728: tulip: Please port from sip4 to sip6

2024-02-21 Thread Andreas Tille
Control: tags -1 upstream Control: forwarded -1 https://github.com/Tulip-Dev/tulip/issues/183 Hi, I verified that the current upstream version of tulip 5.6.3 verifies in for sipconfig module[1] which is only part of SIP4. Thus I opened an upstream issue asking for porting to SIP6. Kind regards

Bug#990392: [Help] Re: depends on deprecated qhull library

2024-02-21 Thread Andreas Tille
Control: tags -1 help Hi, I tried rebuilding the latest upstream version of tulip. The resulting libtulip-core remains depending from libqhull8.0 (>= 2020.1) instead of libqhull-r8.0. Any hint how to fix this is welcome. Kind regards Andreas. -- http://fam-tille.de --

Bug#1055728: Segyio is lagging behind upstream (Was: segyio ftbfs with Python 3.12)

2024-02-21 Thread Andreas Tille
Hi, I've found in the set of patches for segyio other cherry-picked patches to adapt to certain Python3.x versions[1]. The patch kindly suggested by s3v to fix this bug[2] would simply be another cherry-pick from upstream who has meanwhile released a couple of new versions incorporating all

Bug#1043240: transition: pandas 1.5 -> 2.1

2024-02-20 Thread Andreas Tille
Hi Rebecca, Am Tue, Feb 20, 2024 at 10:10:46PM + schrieb Rebecca N. Palmer: > Remaining blockers for testing migration: > - python-ulmo #1044057: has a patch, please upload I've uploaded this yesterday. > - pydevd #1063274: unclear whether my patch breaks something else, please > leave

Bug#1061603: Tags pending

2024-02-17 Thread Andreas Tille
Control: tags -1 pending Its fixed in experimental and waiting for time_t transition. -- debian-science-maintainers mailing list debian-science-maintainers@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-science-maintainers

Bug#1056419: Spinx help needed

2024-02-14 Thread Andreas Tille
Control: tags -1 pending Hi, I pushed fixes for #1056419 and #1058311 to Git and I think should be fixed as well. The only remaining build problem is new and caused by sphinx[1]: dh_sphinxdoc -i -O--buildsystem=pybuild dh_sphinxdoc: error:

Bug#1063599: More info (Was: mathgl: FTBFS on amd64: tests seg fault)

2024-02-14 Thread Andreas Tille
Control: tags -1 moreinfo Control: severity -1 important Hi Sebastian, the package builds nicely in my local pbuilder, in Salsa CI as well as in the autobuilders. Thus I'm tagging the bug moreinfo and set severity to important. Kind regards Andreas. -- http://fam-tille.de --

Bug#1056419: Can we also move uncertainties to DPT (Was: python-hug: autopkgtest failure with Python 3.12)

2024-02-14 Thread Andreas Tille
Hi, thanks for Federico confirming, thus I will move the package to not need to ask again in a possible future attempt. Am Wed, Feb 14, 2024 at 12:24:03PM +0100 schrieb Alexandre Detiste: > Hi Andreas, > > I think usage of "past" has been neutered since: > > if sys.version_info < (3,): >

Bug#1056419: Can we also move uncertainties to DPT (Was: python-hug: autopkgtest failure with Python 3.12)

2024-02-14 Thread Andreas Tille
Hi again Federico, > Am Thu, Feb 08, 2024 at 07:02:09PM +0100 schrieb Federico Ceratto: > > Sure, go ahead, and thank you for taking care of the bug! After you accepted python-hug I wonder whether we can also move python-uncertainties to DPT. I think the usage of past in uncertainties is

Bug#1043240: transition: pandas 1.5 -> 2.1 - please upload fixes

2024-02-02 Thread Andreas Tille
Hi Rebecca, Am Tue, Jan 30, 2024 at 08:05:35AM + schrieb Rebecca N. Palmer: > I intend to upload pandas 2.x to unstable soon. These packages have a patch > in their bug - please upload them (I'm a DM, I can't do that), or if you > think this patch won't work or isn't a good idea, tell me

Bug#1060026: yade: please move away from python3-future

2024-01-25 Thread Andreas Tille
nd-tests/checks/checkList.py: return [sc in onlyOneScript, "not in onlyOneScript"] If it helps I might send my full build log but maybe BTS rejects compressed files. Kind regards Andreas. Am Thu, Jan 25, 2024 at 07:17:13AM +0100 schrieb Andreas Tille: > Hi Anton,

Bug#1060026: yade: please move away from python3-future

2024-01-24 Thread Andreas Tille
Hi Anton, to avoid some race condition: I'm just applying the patch and try to build. I'll let you know about success or failure. Kind regards Andreas. Am Wed, Jan 24, 2024 at 10:13:03PM +0100 schrieb Alexandre Detiste: > control: tag -1 +patch > > Hi, > > Here's a patch. > > I didn't

Bug#1056878: RFH: qiskit-terra

2024-01-22 Thread Andreas Tille
Hi, since qiskit-terra has two RC bugs (#1027203 and #1056878 in CC) and nobody who has expressed any help with this package I wonder whether we can keep this package in Debian. I had a look in later upstream versions but even in 0.13.0 there is a not yet packaged dependency retworkx[1] which

Bug#1043240: transition: pandas 1.5 -> 2.1

2024-01-21 Thread Andreas Tille
Hi Rebecca, Am Sun, Jan 21, 2024 at 03:29:21PM + schrieb Rebecca N. Palmer: > > Hence, doing this transition now would involve breaking some reverse > dependencies with no known fix, but given the number of packages involved, > trying to wait until they're all fixed is rather likely to

Bug#1054748: [Help] Re: mlpy ftbfs with Python 3.12

2024-01-21 Thread Andreas Tille
Control: tags 1056819 pending Control: tags -1 help Hi, after applying the patch for the cython3 issue the build issues of this package are remaining. This is strange since the missing modules are provided inside the package. I wonder what trick I might need to do to convince the Python3

Bug#1060026: [Help] yade: please move away from python3-future

2024-01-06 Thread Andreas Tille
Control: tags -1 help I'd happily upload a fixed package but I've found a lot of instances of future and would prefer if you could provide a patch. Thanks a lot for your effort to remove future from Debian Andreas. -- http://fam-tille.de -- debian-science-maintainers mailing list

Bug#1056419: [Help] Re: python-future: FTBFS: dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p 3.11 returned exit code 13

2023-12-11 Thread Andreas Tille
Hi Alexandre, Am Mon, Dec 11, 2023 at 09:18:16PM +0100 schrieb Alexandre Detiste: > > https://github.com/lebigot/uncertainties/releases/tag/3.1.7 > > +1 OK. > > Also we should probably get rid of python-future at some point. > > I removed it from three games this week-end > and filled 6 more

Bug#1056419: [Help] Re: python-future: FTBFS: dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p 3.11 returned exit code 13

2023-12-11 Thread Andreas Tille
Control: tags -1 help [Bug #1056419 in CC since the issue seems to be caused by python-future] Hi Vincent, I tried to upgrade python-future to the latest upstream version in the hope that this would solve the issue reported in bug #1042244. Unfortunately this is not the case and now with

Bug#1050854: xarray test failure on amd64

2023-11-20 Thread Andreas Tille
Hi Rebecca, Am Sun, Nov 19, 2023 at 09:58:26PM + schrieb Rebecca N. Palmer: > This bug is now a crash (not the original error message): > https://ci.debian.net/data/autopkgtest/testing/amd64/p/python-xarray/39962554/log.gz > I don't know whether the same patch still works. > > The Salsa

Bug#1050854: Please push your changes to python-xarray

2023-11-13 Thread Andreas Tille
07, 2023 at 09:26:13AM +0100 schrieb Andreas Tille: > Hi Alastair, > > I realised that the Git repository on salsa[1] is lagging a couple of > uploads behind the package pool. Please be so kind to push your changes > to Salsa. > > Thanks a lot for your work on this package &

Bug#1033907: numba: autopkgtest regression: segmentation fault on arm64

2023-07-03 Thread Andreas Tille
Hi On Sun, 21 May 2023 11:39:29 -0700 Diane Trout wrote: > Unfortunately it also wants llvmlite 0.40.0. Could you please be more verbose about this "unfortunately"? > It'd probably be easier to get upstream to help with debugging 0.57 I fully agree that we should target at latest upstream

Bug#1036753: unblock: debian-science/1.14.5

2023-05-25 Thread Andreas Tille
Package: release.debian.org Severity: normal User: release.debian@packages.debian.org Usertags: unblock X-Debbugs-Cc: debian-scie...@packages.debian.org, debian-scie...@lists.debian.org Control: affects -1 + src:debian-science Please unblock package debian-science [ Reason ] This is the

Bug#1032410: libclipper-dev: pkgconfig file is refering to wrongly spelled requirement

2023-03-06 Thread Andreas Tille
Package: libclipper-dev Severity: important Tags: patch X-Debbugs-Cc: 897...@bugs.debian.org Hi, I tried to build coot in salsa which fails[1] with configure: error: Clipper not found The reason is $ pkg-config --cflags clipper Package libccp4c was not found in the pkg-config search path.

Bug#1026539: Bug#1027215: Bug#1026539: How much do we lose if we remove theano (+keras, deepnano, invesalius)?

2023-03-02 Thread Andreas Tille
Hi Rebecca, Am Thu, Mar 02, 2023 at 09:00:14PM + schrieb Rebecca N. Palmer: > > 1.1.2 isn't the latest version, just the latest that calls the module theano > rather than aesara. (I chose it to package because I didn't want to fully > break compatibility, then abandoned it because I didn't

Bug#1026539: How much do we lose if we remove theano (+keras, deepnano, invesalius)?

2023-03-02 Thread Andreas Tille
Hi Rebecca, Am Wed, Mar 01, 2023 at 10:41:23PM + schrieb Rebecca N. Palmer: > I agree that switching to Aesara is probably the only reasonable option > other than removal. (I'd given up on trying to fix 1.0, and was intending > to let removal happen.) > > However, it's a much bigger change

Bug#1026539: How much do we lose if we remove theano (+keras, deepnano, invesalius)?

2023-03-01 Thread Andreas Tille
Control: tags -1 pending Hi, > Andrius Merkys wrote: > That said, it is OK to omit keras in bookworm if need be, but I would > like to see it back for trixie. I've spent some time into theano and it builds and runs its test suite in Salsa CI[1]. Since despite some tests are failing in my

Bug#1029701: scikit-learn Re: Are we still trying to do scipy 1.10, given transition freeze?

2023-02-07 Thread Andreas Tille
Am Tue, Feb 07, 2023 at 09:05:28AM +0100 schrieb Drew Parsons: > On 2023-02-07 08:33, Graham Inggs wrote: > > Hi Drew > > > > I think python3-scipy should declare a Breaks on python3-skbio less > > than the version in unstable (0.5.8-3). > > This should sort out the autopkgtest regressions of

Bug#1026514: python-param: FTBFS: TypeError: The only supported seed types are: None,

2023-02-03 Thread Andreas Tille
Control: tags -1 help Hi, I've bumped upstream version to 1.12.3 which basically has the suggested patches applied but the issue remains as you can see in Salsa CI https://salsa.debian.org/science-team/python-param/-/jobs/3891083 Do you have any further hints? Kind regards Andreas. --

Bug#1029701: scikit-learn Re: Are we still trying to do scipy 1.10, given transition freeze?

2023-01-27 Thread Andreas Tille
Am Thu, Jan 26, 2023 at 07:51:23PM + schrieb Rebecca N. Palmer: > Control: tags 1029701 fixed-upstream > > Full log: > https://ci.debian.net/data/autopkgtest/unstable/amd64/s/scikit-learn/30693526/log.gz > > There appear to be at least 2 separate failures here, both known and > probably

Bug#1022571: transition: pandas 1.3 -> 1.5

2023-01-25 Thread Andreas Tille
Hi Graham, Am Wed, Jan 25, 2023 at 02:28:37PM +0200 schrieb Graham Inggs: > On Wed, 25 Jan 2023 at 11:43, Andreas Tille wrote: > > I was motivated for this patch by Diane's statement on the Debian Med > > matrix channel that dask and dask.distributed are interconnected. If >

Bug#1022571: transition: pandas 1.3 -> 1.5

2023-01-25 Thread Andreas Tille
Hi Graham Am Tue, Jan 24, 2023 at 12:50:41PM +0200 schrieb Graham Inggs: > > On Tue, 24 Jan 2023 at 00:16, Rebecca N. Palmer > wrote: > > The remaining autopkgtest failures blocking pandas are: > > - dipy/amd64 and snakemake/i386 look like random flakiness: please retry > > them. (I think DMs

Bug#1017871: Please help to reproduce (Was: shiny-server: server-function don't run)

2023-01-22 Thread Andreas Tille
Hi Sebastian, thanks for your bug report and your attempt to track this down by replacing the sockjs files. Please note that neither Nilesh nor I are shiny-server users. Thus it would help if you could provide a possibly small example that helps us reproducing the problem. Kind regards

Bug#1027215: How much do we lose if we remove theano (+keras, deepnano, invesalius)?

2023-01-16 Thread Andreas Tille
Hi Thiago, Am Mon, Jan 16, 2023 at 11:08:35AM -0300 schrieb Thiago Franco Moraes: > Done! I removed both python3-theano and python3-keras. Thanks for the quick response. Autopkgtest currently fails due to Bug #1027851 pytorch FTBFS with Python 3.11 as default version I think, I'll wait a

Bug#1027215: How much do we lose if we remove theano (+keras, deepnano, invesalius)?

2023-01-16 Thread Andreas Tille
Hi Thiago, Am Sat, Jan 14, 2023 at 07:50:27PM -0300 schrieb Thiago Franco Moraes: > Hi Rebecca, > > InVesalius can work without Theano (and Keras). It will use Pytorch. Would you mind updating the packaging without Theano? Currently its in its Build-Depends. Would it be sufficient to drop

Bug#895531: Unable to import neuron in python3

2023-01-12 Thread Andreas Tille
Hi Étienne, Am Thu, Jan 12, 2023 at 08:57:33PM +0100 schrieb Étienne Mollier: > Note your upload didn't make it to the archive because for some > reason one of the orig.tar.gz has a discrepancy when trying to > reconstruct it from the VCS, Argh. > so I glued our changes in a version > 7.6.3-4

Bug#895531: Unable to import neuron in python3

2023-01-12 Thread Andreas Tille
Control: found -1 7.6.3-3 Control: severity -1 serious I realised that this bug either remained or we have a regression in version 7.6.3. This becomes obvious after I added Testsuite: autopkgtest-pkg-python to the team upload of 7.6.3-3. I also added debian/salsa-ci.yml which enables you

Re: libgtkdatabox for GTK2

2023-01-11 Thread Andreas Tille
Hi Rob, Am Sat, Jan 07, 2023 at 10:14:44AM + schrieb Rob Pearce: > Hello maintainers, > > I'm having trouble migrating a test machine from bullseye to bookworm > because some of my (locally built) applications require the GTK2 version of > libgtkdatabox. I note that the package in bookworm

Bug#1027208: severity of 1027208 is important

2023-01-10 Thread Andreas Tille
Am Tue, Jan 10, 2023 at 09:45:42PM +0100 schrieb Santiago Vila: > severity 1027208 important Thanks a lot for watching me! ;-) Greetings, Andreas. -- http://fam-tille.de -- debian-science-maintainers mailing list debian-science-maintainers@alioth-lists.debian.net

Bug#1027208: scikit-learn: autopkgtest fail with numpy/1.24.1

2023-01-10 Thread Andreas Tille
Control: tags -1 important Control: tags -1 unreproducible Control: tags -1 moreinfo Hi, I've build version 1.1.2+dfsg-92 from unstable without any problem in a pbuilder chroot. It seems the problem was solved with one of the latest uploads. Kind regards Andreas. -- http://fam-tille.de

Bug#1022571: transition: pandas 1.3 -> 1.5

2023-01-10 Thread Andreas Tille
Am Mon, Jan 09, 2023 at 01:44:40PM +0200 schrieb Graham Inggs: > Hi Rebecca > > On Fri, 6 Jan 2023 at 10:30, Rebecca N. Palmer > wrote: > > Should this go ahead before the freeze? I think yes if the new dask > > works, but am open to disagreement. > > Please go ahead. With numpy 1:1.24.1-2

Bug#1026539: theano: FTBFS: dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p 3.10 returned exit code 13

2022-12-29 Thread Andreas Tille
Hi Rebecca, given that there were some uploads to experimental I'm wondering what might be the best strategy to fix the bug - either in the version in unstable or in 1.1.2 and upload this to unstable. Kind regards Andreas. -- http://fam-tille.de -- debian-science-maintainers mailing list

Bug#922584: [Help] Re: FTBFS against opencv 4.0.1 (exp)

2022-12-02 Thread Andreas Tille
Am Thu, Dec 01, 2022 at 11:39:47PM +0200 schrieb Adrian Bunk: > [1] contains a patch from a Debian porter, but considering the facts > that limereg already missed the current Debian stable bullseye and the > comment from upstream (who is also the original Debian packager) in [2], > removal from

Re: nfft_3.5.3-2_amd64.changes REJECTED

2022-11-28 Thread Andreas Tille
Hi Thorsten, Am Sun, Nov 27, 2022 at 07:00:10PM + schrieb Thorsten Alteholz: > can you please explain why you put a shared library in the -dev package? > According to policy § this should not happen. Thanks a lot for the good catch. There is a new interface which I now moved into a new

Bug#1018954: Can't open perl script "/usr/share/vtk9/doxygen//doc_header2doxygen.pl": No such file or directory

2022-10-25 Thread Andreas Tille
Hi, is there any chance to provide doc_header2doxygen.pl in VTK9 packages? Kind regards Andreas. -- http://fam-tille.de -- debian-science-maintainers mailing list debian-science-maintainers@alioth-lists.debian.net

Re: Accepted cimg 3.1.6+dfsg-1 (source) into unstable

2022-10-14 Thread Andreas Tille
Hi Salvatore, Am Thu, Oct 13, 2022 at 11:32:15PM +0200 schrieb Salvatore Bonaccorso: > >* Try hard to follow new package and file layout of libimath-dev > > Closes: #1020028 > > Seems to fix CVE-2022-1325. Thanks for the hint. I'm working on another packaging upgrade and will mentio

Bug#1003165: Set severity to important

2022-08-22 Thread Andreas Tille
Control: severity -1 important Hi, as discussed on Debian Science the affected test suite errors are ignored for the moment so the package does not FTBFS any more and thus the bug is not serious any more. Since issues are remaining the bugs are not closed yet. Kind regards Andreas. --

Bug#1008369: Reduce severity from serious to important

2022-08-15 Thread Andreas Tille
Control: severity -1 important Hi, as discussed on Debian Science the affected test suite errors are ignored for the moment so the package does not FTBFS any more and thus the bug is not serious any more. Since issues are remaining the bugs are not closed yet. Kind regards Andreas. --

Bug#1008369: scikit-learn testing migration

2022-08-13 Thread Andreas Tille
Hi again, Am Thu, Aug 04, 2022 at 01:25:42PM +0200 schrieb Andreas Tille: > Am Fri, Jul 29, 2022 at 06:09:26AM +0200 schrieb Andreas Tille: > Before we fall into another "do nothing" period: I will upload > scikit-learn restricted to those architectures only which have

Bug#1003165: scikit-learn testing migration

2022-08-04 Thread Andreas Tille
Hi again, Am Fri, Jul 29, 2022 at 06:09:26AM +0200 schrieb Andreas Tille: > I just like to repeat my point: If the package is to slow on release > architectures, that we will not manage to fix it, it is in the interest > of our users to not support the problematic architectures

Bug#1003165: scikit-learn testing migration

2022-07-28 Thread Andreas Tille
Am Thu, Jul 28, 2022 at 08:15:45PM -0700 schrieb M. Zhou: > I have a long-term power 9 VM (not QEMU) as testbed. > I'm trying to investigate the issues for release architectures, > but this package is too slow to build with QEMU (multiple hours). > (abel.debian.org is also extremely slow for

Bug#1003165: scikit-learn testing migration

2022-07-28 Thread Andreas Tille
Hi Graham, Am Thu, Jul 28, 2022 at 09:15:06AM +0200 schrieb Graham Inggs: > Hi > > On Wed, 27 Jul 2022 at 17:57, M. Zhou wrote: > > The previous segfault on armel becomes Bus Error on armel and armhf. > > I can build it on Power9, but it seems that the test fails on power8 (our > > buildd). >

Bug#1008369: scikit-learn testing migration

2022-07-27 Thread Andreas Tille
til the issue is fixed) remains. > I can build it on Power9, but it seems that the test fails on power8 (our > buildd). Hmmm, can we talk to buildd admins about this? Kind regards Andreas. > On Wed, 2022-07-27 at 09:56 +0200, Andreas Tille wrote: > > Control: tags -1 unreprod

Bug#1013940: New version of nfft breaks its autopkgtest (Was: nfft breaks pynfft autopkgtest on i386: Segmentation fault

2022-07-27 Thread Andreas Tille
Hi, I was tempted to upload the patch suggested by Bernhard which I applied to the commit of Ileana with the new upstream version. Unfortunately the new upstream version fails the autopkgtest[1] (which was the same when I tried version 3.5.2 which prevented me from uploading). Does anybody have

Bug#1008369: scikit-learn testing migration

2022-07-27 Thread Andreas Tille
:28PM +0200 schrieb Andreas Tille: > Hi Nilesh, > > Am Wed, Jul 20, 2022 at 06:21:19PM +0530 schrieb Nilesh Patra: > > On 7/20/22 4:50 PM, Andreas Tille wrote: > > > Before we stop progress in Debian for many other architectures since we > > > cant't solve this on

Bug#1004793: vtk7: FTBFS with ffmpeg 5.0

2022-07-22 Thread Andreas Tille
Hi Peter, Am Fri, Jul 22, 2022 at 04:36:13AM +0100 schrieb Peter Green: > vtk7 is one of the (possiblly the) last blockers for the ffmpeg transition > that is in testing and is not marked for autoremoval. > The last 7.x upstream release was over 5 years ago. The last vtk7 upload > by someone

Bug#1003165: scikit-learn testing migration

2022-07-20 Thread Andreas Tille
Hi Nilesh, Am Wed, Jul 20, 2022 at 06:21:19PM +0530 schrieb Nilesh Patra: > On 7/20/22 4:50 PM, Andreas Tille wrote: > > Before we stop progress in Debian for many other architectures since we > > cant't solve this on our own or otherwise are burning patience of > > upstr

Bug#1003165: scikit-learn testing migration

2022-07-20 Thread Andreas Tille
Hi, Am Sat, Jul 16, 2022 at 05:58:33PM +0200 schrieb julien.pu...@gmail.com: > > [1]: > > https://buildd.debian.org/status/fetch.php?pkg=scikit-learn=armel=1.1.1-1=1653343638=0 > > I would open a bug report to upstream pointing to that log, and if the > log isn't enough to pinpoint the issue,

Bug#1007817: ITP: wasabi -- lightweight console printing and formatting toolkit for Python3

2022-03-17 Thread Andreas Tille
Package: wnpp Severity: wishlist X-Debbugs-Cc: Anastasiia Iurshina , debian-science-maintain...@lists.alioth.debian.org Subject: ITP: wasabi -- lightweight console printing and formatting toolkit for Python3 Package: wnpp Owner: Andreas Tille Severity: wishlist * Package name: wasabi

Bug#1000336: Upgrading tbb

2022-03-14 Thread Andreas Tille
Hi, Am Mon, Mar 14, 2022 at 12:13:50AM + schrieb Torrance, Douglas: > On Sun 13 Mar 2022 04:50:32 PM EDT, M. Zhou wrote: > > Recently I'm not able to test the build of libtbb-dev's reverse dependencies > > as my build machine was out of access. That blocks my submission of the > > transition

Re: CLHEP | Upload to unstable (96f10080)

2022-03-09 Thread Andreas Tille
Am Wed, Mar 09, 2022 at 02:14:57PM + schrieb Stephan Lachnit (@stephanlachnit): > Thank you so much! This is the last missing dependency for Geant4. Unfortunately its not done yet. I need to do a binary upload to new due to changed binary name. To do so I'll move to d-shlibs since I think

Bug#1000336: Upgrading tbb

2022-02-22 Thread Andreas Tille
Am Wed, Feb 23, 2022 at 12:31:07AM -0500 schrieb M. Zhou: > Hello guys. Finally it's all green on our release architectures > https://buildd.debian.org/status/package.php?p=onetbb=experimental > > I shall request the slot for transition once finished the rebuild > of its reverse dependencies and

Bug#1003165: scikit-learn in unstable FTBFS on arm64, armel, armhf, i386, ppc64el and s390x

2022-02-17 Thread Andreas Tille
Hi, Am Wed, Feb 16, 2022 at 12:09:23PM +0100 schrieb John Paul Adrian Glaubitz: > > So, I have skimmed over the build logs and one of the main issues is the use > of > -march flags to enforce a certain baseline [1]: > > powerpc64le-linux-gnu-gcc: error: unrecognized command-line option >

Bug#1003165: scikit-learn in unstable FTBFS on arm64, armel, armhf, i386, ppc64el and s390x

2022-02-15 Thread Andreas Tille
Control: tags -1 upstream Control: forwarded -1 https://github.com/scikit-learn/scikit-learn/issues/22503 also sent another bug report https://github.com/scikit-learn/scikit-learn/issues/22504 Hi, as I explained to Debian Science list[1] I'd recommend to drop armel and armhf

Re: [ITA] triangle

2022-02-06 Thread Andreas Tille
Am Sun, Feb 06, 2022 at 09:21:12AM +0100 schrieb Antonio Valentino: > Thanks Fred +1 No idea why this happens from time to time ... Kind regards Andreas. -- http://fam-tille.de -- debian-science-maintainers mailing list debian-science-maintainers@alioth-lists.debian.net

Re: onetbb_2021.5.0-1_amd64.changes ACCEPTED into experimental, experimental

2022-02-03 Thread Andreas Tille
Hi Scott, Am Fri, Feb 04, 2022 at 12:00:09AM + schrieb Debian FTP Masters: > Accepted: > ... > Thank you for your contribution to Debian. Thanks to you for steping in here and acting super quickly after d/copright was reviewed. You gave the following hint on IRC: The fact that the

Re: onetbb_2021.5.0-1_amd64.changes ACCEPTED into experimental, experimental

2022-02-03 Thread Andreas Tille
nary: libtbb-dev libtbb-doc libtbb12 libtbb12-dbgsym > > Architecture: source amd64 all > > Version: 2021.5.0-1 > > Distribution: experimental > > Urgency: medium > > Maintainer: Debian Science Maintainers > > > > Changed-By: Andreas Tille > > Descr

Re: onetbb_2021.4.0-1~exp1_amd64.changes REJECTED

2022-02-03 Thread Andreas Tille
Hi Scott, Am Thu, Feb 03, 2022 at 03:00:08PM + schrieb Scott Kitterman: > > Normally for a package already in Debian I wouldn't reject due to copyright/ > license documentation, but I am making an exception is this case. I only > started to look at this package by doing grep -ir copyright *

Re: SYMPHONY Debian package

2022-01-26 Thread Andreas Tille
may just be missing some > basic knowledge of the packaging system. > > Cheers, > > Ted > > On Wed, Jan 26, 2022 at 1:18 AM Andreas Tille wrote: > > > Hi Ted, > > > > Am Tue, Jan 25, 2022 at 10:37:49PM -0500 schrieb Ted Ralphs: > > >

Re: SYMPHONY Debian package

2022-01-25 Thread Andreas Tille
Hi Ted, Am Tue, Jan 25, 2022 at 10:37:49PM -0500 schrieb Ted Ralphs: > Hi Andreas, > > I am the author of SYMPHONY, which you so kindly packaged on Deiban. It was not really me but the Debian Science team. Please note: Communication via our mailing list or via the bug tracking system (by

Re: Any plans to update tbb package to 2021

2022-01-13 Thread Andreas Tille
Hi Anton, the updated package is since 5 days in the Debian New queue: https://ftp-master.debian.org/new/onetbb_2021.4.0-1~exp1.html The migration via new is necessary due to the change of a binary package name (bumped SONAME) which unfortunately takes some time of volunteers. The whole

Bug#984049: enblend-enfuse: ftbfs with GCC-11

2022-01-12 Thread Andreas Tille
Control: tags -1 help Hi, Am Tue, Dec 14, 2021 at 06:27:47PM +0100 schrieb Heinz Repp: > > /usr/include/vigra/separableconvolution.hxx:1413:13: error: ISO C++17 does > > not allow dynamic exception specifications > > /usr/include/vigra/stdconvolution.hxx:796:13: error: ISO C++17 does not > >

Bug#1003395: plfit FTBFS on s390x

2022-01-10 Thread Andreas Tille
Control: tags -1 upstream Control: forwarded -1 https://github.com/ntamas/plfit/issues/38 The issue is actually discussed upstream even before this bug was filed. -- debian-science-maintainers mailing list debian-science-maintainers@alioth-lists.debian.net

Bug#1000336: Upgrading tbb

2022-01-08 Thread Andreas Tille
Hi Mo, thanks a lot. I asked on IRC for priorisation of this package. Kind regards Andreas. Am Sat, Jan 08, 2022 at 08:30:57PM -0500 schrieb M. Zhou: > Hi all, > > The good news is that I managed to upgrade onetbb. It  > is in the NEW queue now: >

Bug#1000336: Upgrading tbb

2021-12-23 Thread Andreas Tille
Hi, Am Thu, Dec 23, 2021 at 11:03:56AM -0500 schrieb M. Zhou: > > I've just finished my final exams so I could do something during > the holiday. Great. Hope you finished the exams successfully. ;-) > That TBB repository is still work-in-progress and > FTBFS from the master branch is

Bug#1000336: Upgrading tbb (Was: numba: FTBFS with Python 3.10)

2021-12-22 Thread Andreas Tille
Hi, Am Wed, Dec 22, 2021 at 05:09:35PM -0800 schrieb Diane Trout: > On Wed, 2021-12-22 at 22:24 +0530, Nilesh Patra wrote: > > > > Actually because of the current state of numba, several reverse > > depends are FTBFS so it's > > bit urgent to push. Apologies for getting on your nerves, though. >

Re: [ITA] triangle

2021-12-18 Thread Andreas Tille
Hi Antonio Am Sat, Dec 18, 2021 at 07:15:23PM +0100 schrieb Antonio Valentino: > I would like to adopt triangle (non-free) [1] and maintain it under the > Debian Science umbrella. > I have found already a git repository for the package in salsa [2] with some > preliminary job done by Andreas (in

Bug#1000336: numba: FTBFS with Python 3.10

2021-12-10 Thread Andreas Tille
Hi, I've commited version 0.54.1 to Git since I assume that we have better chances for Python3.10 support in the more recent upstream version. Unfortunately the build stops with dh_auto_clean -O--buildsystem=pybuild I: pybuild base:237: python3.10 setup.py clean ... from distutils import

Bug#991785: unblock: debian-science/1.14.2

2021-08-01 Thread Andreas Tille
Package: release.debian.org Severity: normal User: release.debian@packages.debian.org Usertags: unblock X-Debbugs-Cc: Nilesh Patra , Ole Streicher , Debian Science Team Please unblock package debian-science [ Reason ] Blends metapackages need to be refreshed at end of freeze to reflect

Bug#949767: arrayfire update fails in configure step

2021-04-30 Thread Andreas Tille
On Thu, Apr 29, 2021 at 04:45:20PM +0200, Gard Spreemann wrote: > The capitalization typo seems to be present also in arrayfire's > use_debian_packaged_libs.patch: I believe line 64 of > > >

Bug#949767: arrayfire update fails in configure step

2021-04-28 Thread Andreas Tille
Hi Aaron, On Tue, Apr 27, 2021 at 08:14:10PM -0400, Aaron M. Ucko wrote: > Please try adding a build dependency on libclfft-dev and replacing > src/backend/opencl/CMakeLists.txt's inclusion of build_clFFT with a call > to > > find_package(clFFT) > > > Thanks a lot for your initial hint

Bug#949767: arrayfire update fails in configure step

2021-04-27 Thread Andreas Tille
Hi Aaron, On Mon, Apr 26, 2021 at 08:30:39AM -0400, Aaron M. Ucko wrote: > Andreas Tille writes: > > > /usr/bin/ld: cannot find -lpthreads > > Thanks for posting a link to the full log! AFAICT, the actual errors > appear much earlier, on lines 1573-1593: > > C

Bug#949767: arrayfire update fails in configure step

2021-04-26 Thread Andreas Tille
Hi, I personally have no interest in arrayfire but I realised that the Debian packaged version depends clblas (and is the only remaining package that needs cblas and I would like to see it removed from Debian due to bug #949767) Thus I tried to upgrade arrayfire to the latest upstream version in

Bug#984882: unblock: debian-science/1.14.1

2021-03-09 Thread Andreas Tille
Package: release.debian.org Severity: normal User: release.debian@packages.debian.org Usertags: unblock X-Debbugs-Cc: debian-science-maintain...@lists.alioth.debian.org Please unblock package debian-science (Please provide enough (but not too much) information to help the release team to

Please be so kind to accept this quickly to enable release team an migration exception (Was: debian-science_1.14_amd64.changes is NEW)

2021-03-07 Thread Andreas Tille
Hi ftpmasters, the Blends metapackages are usually uploaded relatively late to adapt to the package pool right before the freeze to reflect the actual status and have at best no changes right before the release but may be only a few changes in case some package might be removed in deep freeze.

Bug#984497: ITP: python-cython-blis -- Fast BLAS-like operations from Python and Cython, without the tears (Python 3)

2021-03-04 Thread Andreas Tille
Owner: Andreas Tille Severity: wishlist * Package name: python-cython-blis Version : 0.7.4 Upstream Author : The University of Texas at Austin * URL : https://github.com/explosion/cython-blis * License : BSD-3-Clause Programming Lang: Python Description

Bug#982869: datamash FTBFS on !x86 32bit: FAIL: tests/decorate-errors

2021-02-19 Thread Andreas Tille
Control: tags -1 upstream Control: forwarded -1 assafgor...@gmail.com Control: severity -1 important Hi Assaf, as you can read in a recent bug report in Debian[1] datamash fails for some architectures (namely the Debian release architectures armel, armhf and mipsel) its build time test in some

Bug#978261: swiglpk: FTBFS: dh_auto_test: error: pybuild --test --test-nose -i python{version} -p 3.9 returned exit code 13

2021-02-08 Thread Andreas Tille
On Mon, Feb 08, 2021 at 10:43:00PM +0200, Adrian Bunk wrote: > Control: tags -1 patch fixed-upstream > > ... > Attached are the relevant parts from the upstream fix. Thanks. Uploaded. > After that, it is worth trying whether this fixed python-cobra. Python-cobra builds nicely now.

Bug#976952: [Help] Re: lmfit-py: FTBFS on ppc64el (arch:all-only src pkg): dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p 3.9 returned exit code 13

2020-12-18 Thread Andreas Tille
welcome. Kind regards Andreas. - Forwarded message from Matt Newville - Date: Fri, 18 Dec 2020 05:35:01 -0800 From: Matt Newville To: lmfit/lmfit-py Cc: Andreas Tille , Author Subject: Re: [lmfit/lmfit-py] Test failure on ppc64el (#692) This is a duplicate of #686. Personally

Bug#962494: [ROM] python3-backports.weakref: Please remove since seems to be useless

2020-12-17 Thread Andreas Tille
Control: reasign -1 ftp.debian.org As the bug reporter stated the package is useless and should be removed from Debian Kind regards Andreas. -- http://fam-tille.de -- debian-science-maintainers mailing list debian-science-maintainers@alioth-lists.debian.net

Bug#888733: [ROM] hyantesite: Please remove hyantesite since Uploader seems not active any more and several attempts to fix FTBFS issues have failed

2020-12-17 Thread Andreas Tille
Control: retitle -1 [ROM] hyantesite: Please remove hyantesite since Uploader seems not active any more and several attempts to fix FTBFS issues have failed Control: reassign -1 ftp.debian.org Hi ftpmasters, as the bug log shows several people who failed to fix FTBFS issues in this package have

Bug#938795: vmtk does not build any more

2020-12-08 Thread Andreas Tille
Hi, On Tue, Dec 08, 2020 at 04:21:01AM +0800, Drew Parsons wrote: > First thing to try would be building against vtk9, which Anton recently > released for us. Thanks for the hint but switching to vtk9 leads to cmake errors: -- The imported target "vtkgdcmsharpglue" references the file

Bug#938795: vmtk does not build any more

2020-12-07 Thread Andreas Tille
Hi, vmtk is using Python3 in Git[1], but there are build issues with vtk7: ... cd /build/vmtk-1.4.0+dfsg/obj-x86_64-linux-gnu/vtkVmtk/ComputationalGeometry && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -DvtkvmtkComputationalGeometry_EXPORTS -I/build/vmtk-1.4.0+

Bug#922584: [Help] Re: FTBFS against opencv 4.0.1 (exp)

2020-11-23 Thread Andreas Tille
Control: tags -1 help Hi, the configure step checks for the existence of opencv and only if available builds the executable limereg. I found a (hackish) solution in Git[1] to convince configure that opencv is available. However, the code tries to include cv.h which is not available any more.

Bug#888541: paw: Missing patches due to incomplete quilt conversion?

2020-10-18 Thread Andreas Tille
Control: severity -1 normal The cernlib packages are using some common patch method that remains to use dpatch in cernlib-base-dev. While this is not really nice the patches are actually applied so the severity important is not correct here. Leaving the bug open anyway since this should be

Bug#957665: Fortran issue solved but symbols issues (Was: Bug#957665: Fortran issue in paw (Was: paw: ftbfs with GCC-10))

2020-10-17 Thread Andreas Tille
Hi Andrius On Thu, Oct 15, 2020 at 03:34:15PM +0300, Andrius Merkys wrote: > > FFLAGS += -fallow-argument-mismatch Thanks a lot for the helpful hint which enabled me to do one step forward[1]. Unfortunately there are further errors: ... /usr/bin/ld:

Bug#957665: Fortran issue in paw (Was: paw: ftbfs with GCC-10)

2020-10-15 Thread Andreas Tille
Control: tags -1 help Hi, when trying to build paw with gcc / fortran 10 there are some FORTRAN errors: ... Error: Type mismatch between actual argument at (1) and actual argument at (2) (COMPLEX(4)/INTEGER(4)). /<>/src/pawlib/comis/code/cs1200.F:138:24: 76 | CALL

Bug#945467: Fix available (fwd)

2020-05-16 Thread Andreas Tille
Hi Jeremy, please make sure to inject pristine-tar (according to Debian Science policy). I did so now. Unfortunately the package does not build in a pbuilder chroot: ... dh_sip3 make[1]: Leaving directory '/build/veusz-3.2.1' dh_install -O--buildsystem=pybuild dh_install: warning: Cannot

Bug#959366: python3-seaborn: Allow fallback to scipy when statsmodels is present and issues runtime errors

2020-05-01 Thread Andreas Tille
Hi Étienne, On Fri, May 01, 2020 at 03:41:46PM +0200, Étienne Mollier wrote: > > There is a patch upstream that fixes this issue, available at > the following location: > > > https://github.com/mwaskom/seaborn/commit/09fef026ad89a299e13db44fa5b92885fb5b2823 > > This patch is part of

Bug#875584: Can jhdf be uploaded?

2020-04-22 Thread Andreas Tille
Hi, On Wed, Apr 22, 2020 at 06:32:55PM +0200, Giovanni Mascellani wrote: > Apparently jhdf has a patch committed in Salsa which would fix a FTBFS > (which currently prevents hdfview from installing in sid). Is there are > reason for not uploading it? Pretty please upload! Thank you

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