RE: cTAKES Rest Service Development - Dictionary GUI MySQL Progress + 1 Concern [EXTERNAL]

HI Sean, I guess he meant about annotators like Negation annotator, Context annotator etc.. and its short description if I'm right for the write-up. Regards, Gandhi -Original Message- From: Finan, Sean [mailto:sean.fi...@childrens.harvard.edu] Sent: Monday, April 30, 2018 8:28 PM To: d

RE: Ctakes not running on docker

Hi Zakir, I could see that you are using customDictionary.xml as dictionary descriptor. Does that XML file contains valid jdbcUrl property? Regards, Gandhi -Original Message- From: Zakir Saifi [mailto:zakir.sa...@raxa.com] Sent: Tuesday, May 01, 2018 11:32 AM To: dev@ctakes.apache.org

RE: issues with line endings

Hi Tim, Though I'm not an expert in git, I guess there is a setting to turn off this feature of auto correcting line endings in git-svn. Just have a look at this link - https://dzone.com/articles/git-showing-file-modified-even and see if it helps. Regards, Gandhi -Original Message- F

RE: Query on ctakes

Hi, As far as I know, there is no annotations available in cTAKES to extract person specific details as I checked with Sean earlier. May be he can elaborate more on this. Regards, Gandhi -Original Message- From: IBIL Global [mailto:ibilglob...@gmail.com] Sent: Wednesday, May 09, 2018 1

RE: Batching Queries in Ctakes Web Rest

Even if you send it in batch, the processing will be sequential I guess. You may have to run multiple instances of REST service to process huge volume of records. Regards, Gandhi -Original Message- From: Zakir Saifi [mailto:zakir.sa...@raxa.com] Sent: Monday, May 21, 2018 4:23 PM To: de

RE: Run cTAKES continuously

Hi Ted, The implementation suggested by Peter is already available in https://github.com/GoTeamEpsilon/ctakes-rest-service/tree/master/ctakes-web-rest Building this project will give you a WAR file which you need to deploy in Tomcat. Regards, Gandhi -Original Message- From: Peter Abra

RE: Run cTAKES continuously

. I also found that Tika has a cTAKES REST API, but unfortunately it loads the model on each request. On Wednesday, June 13, 2018, Gandhi Rajan Natarajan < gandhi.natara...@arisglobal.com> wrote: > Hi Ted, > > The implementation suggested by Peter is already available in >

RE: Run cTAKES continuously

trivial change, the system has to re-do a large amount of downloading and building. On Thu, Jun 14, 2018 at 4:53 PM, Gandhi Rajan Natarajan < gandhi.natara...@arisglobal.com> wrote: > Hi Ted, > > Try building 'ctakes-web-rest' module in https://github.com/ > GoTea

RE: UMLS credentials don't seem to let me run UMLS process XML files

Hi Ken, Similar issues are creeping up very frequently off late. Though I’m not sure what exactly is the issue here, in one of the recent mail chains Dmitriy has mentioned the following: We had similar issues back in February (you can search the email archive). I was under impression that this

RE: API to integrate programmatically

Hi Ravi, Please refer to the following github repository - https://github.com/GoTeamEpsilon/ctakes-rest-service/tree/master/ctakes-web-rest This is a beta version of the cTAKES REST service implementation. Hope it helps. -Original Message- From: Ravindranath Oruganti Sent: Friday, July

Family history identification in cTAKES

Hi All, Does cTAKES provides any annotators or any other mechanism to extract out family history information of a patient? For e.g, if the input is "Patient has Cancer. His mother has arthritis". Is there a way to extract out arthritis as family disease history? This email and any files transm

RE: Family history identification in cTAKES

at 8:21 AM, Gandhi Rajan Natarajan < gandhi.natara...@arisglobal.com> wrote: > Hi All, > > Does cTAKES provides any annotators or any other mechanism to extract > out family history information of a patient? > > For e.g, if the input is "Patient has Cancer. His mother

RE: ctake web service

Hi Kathy, Sometime back we encountered this issue and the problem seems to be DB connections getting timed out. Currently we are using the following implementations: "org.apache.ctakes.dictionary.lookup2.dictionary.JdbcRareWordDictionary" and "org.apache.ctakes.dictionary.lookup2.concept.JdbcC

RE: ctake web service [EXTERNAL]

manually connect when processing (re)starts. I am really busy these days, and this is just an off-the-cuff idea, but if anybody out there can tackle this please let the devlist know about it. Sean -Original Message- From: Gandhi Rajan Natarajan [mailto:gandhi.natara...@arisglobal.com] Sent

RE: Question regarding Dictionary Creator GUI

Hi Brihat, Is your 'CTAKES_HOME' environment variable pointing to the right directory? Also I could see that you are trying to execute runDictionaryCreator.sh available under the checked out codebase from SVN. Did you build the complete cTAKES code before executing this? Regards, Gandhi -

RE: Question regarding Dictionary Creator GUI

ve to set the fast dictionary parameter exactly. Can you point me towards the right direction? Thanks, Brihat On Wed, Oct 10, 2018 at 12:11 AM Gandhi Rajan Natarajan < gandhi.natara...@arisglobal.com> wrote: > Hi Brihat, > > Is your 'CTAKES_HOME' environment variable p

RE: missing medication mentions (tika cTAKESParser)

Hi Patrick, If the default CVD works fine, then we may have to look at tika app implementation on how it processes the cTAKES output. It required you can come up with your parser. Please check this link for more info on custom parser - https://github.com/GoTeamEpsilon/ctakes-rest-service/blob/

RE: [Request for information] - how do I become a committer?

Thanks for providing the access James. @Rumpa, The broken link is corrected now. Regards, Gandhi -Original Message- From: James Masanz Sent: Friday, October 26, 2018 10:04 PM To: dev@ctakes.apache.org Subject: Re: [Request for information] - how do I become a committer? Great to hear y

RE: Adding LabValueFinder to Piper file leads to MESSAGE LOCALIZATION FAILED error

Hi Rumpa, I guess you are using cTAKES 4.0.0 user installation setup which does not have LabValueFinder implementation. Try building ctakes core jar from cTAKES SVN trunk and try again. It should work fine. Regards, Gandhi -Original Message- From: Rumpa Giri Sent: Wednesday, October 3

RE: Compiling Ctakes from Subversion

Hi Peter, I use Java 1.8.0_171. Checked out the source code from - https://svn.apache.org/repos/asf/ctakes/trunk I don’t get any compilation issue in ctakes-temporal module running the command - " mvn clean install" Regards, Gandhi -Original Message- From: Peter Abramowitsch Sent: Su

RE: ctakes-web-rest changes

Hi Tim, Thanks for taking your time out and checking this. Have left my comments in the JIRA issue. Sorry that I could not improvise on the REST module which is more suitable for our business needs due to lack of domain expertise. Regards, Gandhi -Original Message- From: Miller, Timoth

<    1   2