be interested in going - just looking for funds..
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:02, Stian Soiland-Reyes
soiland-re...@manchester.ac.uk wrote:
The old mailing lists are now officially closed. Welcome to the new lists!
We are already archived at markmail:
http://apache-taverna.markmail.org/search/?q=
I'll update http://www.taverna.org.uk/about/contact-us
or directory
Any hints or suggestions on how to improve this documentation? Is some
more bootstrapping required through INFRA and our mentors?
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[2] https://airavata.apache.org/about/downloads.html
On 11/17/14, 12:15 PM, alaninmcr wrote:
On 17/11/2014 17:18, Stian Soiland-Reyes wrote:
I talked to Andy here at ApacheCon in Budapest (hah everything on the
list!)
and we discussed
development continues at https://github.com/taverna/ - due to
prepare the final 2.5.1 non-Apache release.
Stian Soiland-Reyes was at ApacheCon in Budapest, fruitful discussions
with mentor Andy Seaborne and Gavin McDonald from INFRA with regards
to the transitioning of Taverna's existing source code
--
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mailing list.
On 12/11/2014 12:17 PM, Stian Soiland-Reyes wrote:
Great! Good to see wsdl-generic finally being used in a generic way. :)
I guess this is a good enough reason to keep taverna-wsdl-generic as a
separate git repository when we import into git.apache.org - it can
work
Great idea! Let's go with this for the first release and see how it goes,
we never supported XML Schema 2 in Taverna 2.x anyway.
BioSWR can work with older XML schema, right?
It could also be worthy to check if any of your work on tinyWsdl could be
ported into Woden. Have you had a brief look at
activity just makes the
situation worse, not better.
Alan
On 22 December 2014 at 06:27, Stian Soiland-Reyes st...@apache.org
wrote:
Donal and Alan,
In Github we have three repositories for the Component activity:
https://github.com/taverna/?query=component-
taverna-component
/15 9:57 AM, Stian Soiland-Reyes wrote:
I put it there in the table - is it really a news item as well?
https://incubator.apache.org/projects/taverna.html#Identify+the+project+to+be+incubated
Note that the rest of those tables are rather empty... perhaps Mentors
edit in if they have done
:54, Alan Williams alanin...@googlemail.com wrote:
Yay! We should add it to the podling report as well.
Alan
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://incubator.apache.org/odftoolkit/odfdom/index.html
[2]
https://github.com/taverna/taverna-scufl2/commits/master/scufl2-ucfpackage/src/main/java/uk/org/taverna/scufl2/ucfpackage/impl/odfdom/pkg/OdfPackage.java
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of classes.
It is the parent on the master branch of
https://github.com/taverna/taverna-maven-parent/ that I broke :)
Alan
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http://orcid.org/-0001-9842-9718
://taverna.staging.apache.org/introduction
and
http://taverna.incubator.apache.org/documentation/
Have a slightly different menubar which will become the main one in a few
days to make these pages public.
Unless of course someone has a good reason not too.
Christian
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/incubator-taverna-language/builds/49764713
Jenkins: http://build.mygrid.org.uk/ci/job/incubator-taverna-language/32/
On 6 February 2015 at 16:55, Stian Soiland-Reyes st...@apache.org wrote:
the travis build at
https://travis-ci.org/taverna-incubator/incubator-taverna-language/builds/49756777#L7802
specified BOTH now to be sure.
https://github.com/taverna-incubator/incubator-taverna-maven-parent/blob/master/pom.xml#L87
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imports in a bit, as those require
more preparations on the myGrid side.
On 6 February 2015 at 16:47, alaninmcr alanin...@googlemail.com wrote:
Thanks Shoaib.
Alan
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, alaninmcr alanin...@googlemail.com wrote:
On 06/02/2015 17:09, Stian Soiland-Reyes wrote:
Do we need to check with anyone (IPMC? Legal?) or update any magic
files before we are allowed to move in the code now?
Does the incubator report need to be updated? (too late?)
https://wiki.apache.org/incubator
-Apache, and 1 that was 3.0.0-SNAPSHOT, the new version
for all modules is 3.1.0-SNAPSHOT
On 5 February 2015 at 10:44, Alan R Williams notificati...@github.com
wrote:
On 05/02/2015 10:21, Stian Soiland-Reyes wrote:
Less crazy is good. But this is security..
I won't merge it in before
In principle I agree with your suggestions of package renaming, go ahead! I
had not got round to it.
I would only do renames at the incubator-* repositories, e.g. not in
taverna-commons-activities yet, as Java packages are reflected as file
renames.
(And the remaining repos are yet to be created
Can't we keep the old site at say archive.taverna.org.uk ?
I think to start with for taverna.org.uk we would just redirect front page,
contact, download (?) to the apache site. The old Taverna 2 pages, e.g. its
plugin listing or description of projects that use(d) non-Apache Taverna we
should be
On 15 January 2015 at 00:49, Stian Soiland-Reyes st...@apache.org wrote:
Hosted at http://taverna.incubator.apache.org/scufl2info/ -- not sure
how stable it is yet.
Unstable - it kept giving Internal Server Error. Might have been
putting an unfair load on the apache.org httpd..
Redirected
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for
components, and the helpsets for the Workbench.
Donal.
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http://orcid.org/-0001-9842-9718
/xsd/xenc-schema.xsd
taverna-scufl2-ucfpackage/src/main/xsd/xmldsig-core-schema.xsd
appear to be duplicates and probably should be referenced anyway.
taverna-scufl2-ucfpackage/src/main/xsd/container.xsd is LGPL and
manually adapted by Stian Soiland-Reyes from links that no longer work.
Alan
On 22 January 2015 at 19:17, Stian Soiland-Reyes st...@apache.org wrote:
Looks great for a first go (perhaps org.apache.taverna.scufl2.wfdesc ?).
Done.
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NOTICE/LICENSE file now.
On 10 February 2015 at 14:14, alaninmcr alanin...@googlemail.com wrote:
On 09/02/2015 14:16, Stian Soiland-Reyes wrote:
[snip]
taverna-scufl2-rdf was an early attempt to read in the Workflow Bundle
content by parsing the RDF instead of the XML - but this code
readable:
https://gist.github.com/stain/2385677f01d8f59bf8c8
That doesn't help the appassembler-maven-plugin above.. but that's OK
here, as the folder it makes is not distributed in the binaries.
On 10 February 2015 at 16:34, Stian Soiland-Reyes st...@apache.org wrote:
Not sure what is the best
wrote:
On 11/02/2015 12:23, Stian Soiland-Reyes wrote:
On 11 February 2015 at 11:37, Donal K. Fellows
donal.k.fell...@manchester.ac.uk wrote:
The key things that are issues (as of 11:15, when I last pulled from the
staging repo):
Thanks for the list. I can try to go through it proper
of the README
you should not be committing anything to the old repositories (except
on their maintenance branch for 2.x).
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Apache Taverna (incubating)
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- as a pretty old
project we should be in clear, as long as one of those Greek
restaurants don't start building radical workflow solutions..
I've filed https://issues.apache.org/jira/browse/PODLINGNAMESEARCH-68
- but Jira managed to mess up my linefeeds somewhere in its AJAX..
--
Stian Soiland-Reyes
subscribers
with the usual mailing list commands.
Marlon
On 1/28/15 9:23 AM, Stian Soiland-Reyes wrote:
On 28 January 2015 at 13:53, Marlon Pierce marpi...@iu.edu wrote:
On 1/28/15 1:23 AM, Stian Soiland-Reyes wrote:
I've filed https://issues.apache.org/jira/browse/PODLINGNAMESEARCH-68
renaming of branches so
that master is Taverna 3 - perhaps delete/tag most of the other
branches.
Donal - have you had a go at changing taverna-server to use the
org.apache.taverna command line tool yet?
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in the incubator site or in github. I am inclined to go for
github.
Alan
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Apache Taverna (incubating)
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org.apache.commons.codec.binary.Base64
instead.
Also, I am not convinced that Baclava support should be included in an
org.apache.taverna releases. It is very much a legacy that we want to get
rid of. Of course, the same argument can be made about t2flow :)
Alan
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Apache Taverna (incubating)
http
they are
Apache headered.
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The University of Manchester
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TkaJ5pJ3GvLxSopeqAVWkZb2tyM5LjE4MfIplN4nJ2Bz1D2iwE9D9DA454VpqBU=
=hERk
-END PGP SIGNATURE-
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the header text is trickier as newlines need to be
escaped, and so would not satisfy RAT.
On 9 Feb 2015 15:25, Donal K. Fellows donal.k.fell...@manchester.ac.uk
wrote:
On 09/02/2015 14:57, Stian Soiland-Reyes wrote:
Great stuff!
Am I correct in interpreting this that we now should be IP clear
can't use the source distribution we inherit from Apache Parent and
have to do separate apache-taverna-language modules etc to make the
source artifacts?
On 11 February 2015 at 09:34, Andy Seaborne a...@apache.org wrote:
On 10/02/15 17:04, Stian Soiland-Reyes wrote:
Jena does this manually
directly or view it on GitHub
https://github.com/taverna-incubator/incubator-taverna-language/pull/2.
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/doc-license
On 10 February 2015 at 11:52, alaninmcr alanin...@googlemail.com wrote:
Hello everybody,
I have put the licenses on the xsd files that are definitely
Taverna-community-created.
Alan
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http://orcid.org/-0001-9842-9718
aah! It was forgotten behind in the wrong github organization :-(
( http://github.com/myGrid/scufl2-examples )
Added it now. More license headers to fix.. :)
On 10 February 2015 at 12:02, alaninmcr alanin...@googlemail.com wrote:
On 09/02/2015 14:16, Stian Soiland-Reyes wrote:
[snip
2.0b4 (SPL/LGPL) we have only ever used it as a jar from Maven
central. You need to go to beanshell.org to find the source code manually.
On 8 Jan 2015 16:05, Andy Seaborne a...@apache.org wrote:
On 08/01/15 13:03, Stian Soiland-Reyes wrote:
So for now then, the main thing would just be to include
],
/Users/ian/code/incubator-taverna-commandline/taverna-commandline-product/pom.xml,
line 517, column 16
:)
Cheers,
Ian
On 06/01/2015 13:27, Stian Soiland-Reyes wrote:
We should aim for flat groupIds which somehow map to the repository
name.
No t2 or t3.
so the groupId
correspond to
https://github.com/taverna/taverna-scufl2/tree/0.9.2
correspond to
https://github.com/apache/incubator-taverna-language/tree/old/scufl2-0.9.2
On 14 March 2015 at 00:48, Stian Soiland-Reyes st...@apache.org wrote:
Good point to leave update pointers, this was not done properly in all
On 17 March 2015 at 16:18, alaninmcr alanin...@googlemail.com wrote:
I see there are many taverna pieces in incubator that are still in
taverna's uk package.
They should all be changed to org.apache in the near future.
Anyone can do this job, it's just a bit of labour in the Refactor menu
in
command line tools work
in the system.?
Also, what is the Taverna language API? Is it this scul2 api or anything
else?
Thank you very much.
Menaka
--
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Faculty of Engineering,
University of Peradeniyaya.
LinkedIn
--
Stian Soiland-Reyes
Apache Taverna
Taverna Server? Using a Player could allow you to
run workflows that have user interaction.
The Player itself is in Ruby but that should not matter if you just talk to
its API.
https://github.com/myGrid/taverna-player
Thanks
Alan
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Stian Soiland-Reyes
Apache Taverna (incubating), Apache
issues like
'favorite' button not reacting, unable to launch a workflow with error:
'not a workflow(.t2flow) file'.
Cheers
--
Stian Soiland-Reyes
Apache Taverna (incubating), Apache Commons RDF (incubating)
http://orcid.org/-0001-9842-9718
the app from scratch however
studying in detail what was done on the previous one and what needs
improvement or redesign.
Thanks
2015-03-18 16:34 GMT+01:00 Stian Soiland-Reyes st...@apache.org:
Do you mean https://github.com/myGrid/taverna-mobile ? It was not
affected as it was always
On 18 March 2015 at 13:57, Dmitry redmi...@list.ru wrote:
I have an experimental wsdl-generic which is based on XML-tree model
(directly based on XML Schema model) instead of splitters.
This package may be used as a stand-alone commandline tool for web services
execution.
Great!
Because
the rat.txt files)
Mentors - do you believe this is sufficient to go for a release, or
would we need to put something into LICENSE as well?
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http://orcid.org/-0001-9842-9718
workflows.
On 9 Mar 2015 14:10, alaninmcr alanin...@googlemail.com wrote:
On 08/03/2015 22:49, Stian Soiland-Reyes wrote:
[snip]
Feel free to propose other gsoc project ideas in the COMDEV jira (as our
own Jira is not yet imported) - use the label gsoc2015 and prefix title
with Taverna:
I do
as
http://guess.taverna.org.uk/workflowBundle/2f0e94ef-b5c4-455d-aeab-1e9611f46b8b/workflow/HelloWorld/processor/hello/out/output1
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/old/dependency-activity-maintenance-2010-09-06 [created] ac10a0d89
refs/tags/old/dependency-activity-pre-incubator-20150306 [created] eaa15e216
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dependency list for every dependency
activity in the workflow - even if the classloader sharing is not set
to workflow. But the only other option now in the enum is system
which would still cover the whole workflow.
On 6 March 2015 at 16:34, Stian Soiland-Reyes st...@apache.org wrote:
As followers
Good point to leave update pointers, this was not done properly in all svn
repos after we moved to Github, and several wikipages still unfortunately
point to Googlecode.
A also have not done a proper 2.x release after moving to github.com/taverna
and so there could in theory be the odd utils
It was encouraged at the ApacheCon Marketing talk to create such accounts,
for nothing else but to claim the names.
I don't think we need to have (incubating) in the usernames, but in the
profile names, yes!
Username should be like @ApacheTaverna I would guess - that's the style I
see searching
I could not get Maven to find the dependency with just woden (which is
just a pom), are you sure we should depend on say woden-dom? (Or -om)?
Are we able to pick the implementation through OSGi at the product-level,
or do we simply choose one for wsdl-generic?
On 30 Mar 2015 10:36, Dmitry
(?) have to relicense it.
On 3/31/2015 5:47 PM, Stian Soiland-Reyes wrote:
M9 is still released Maven-wise, the SNAPSHOT could break tomorrow and
is not a stable point release. (You can hardcode timestamped
SNAPSHOTS, but it's not ideal, and the maven release plugin would
still bail out)
Would
.workbench.models.graph.dot
some classes are missing
On 3/31/2015 5:43 PM, Stian Soiland-Reyes wrote:
the workbench.models.graph.dot should be built by Maven
generate-sources -- in Eclipse do a right click and Maven - Update
Project to find it in target/generated-sources
and for the practical use for Taverna
are equal.
Dmitry
Alan
.
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OK - see https://github.com/apache/incubator-taverna-maven-parent/pull/2
On 2 March 2015 at 12:46, Suresh Marru sma...@apache.org wrote:
On Mar 2, 2015, at 6:06 AM, Stian Soiland-Reyes st...@apache.org wrote:
Thanks for testing, Suresh!
I notice both the Author and Committer became Suresh
License, Version 2.0](http://www.apache.org/licenses/LICENSE-2.0)
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Done.
On 26 February 2015 at 11:04, Marlon Pierce marpi...@iu.edu wrote:
I recommend you reverse the order of your issues.
On 2/26/15 2:34 AM, Stian Soiland-Reyes wrote:
I've started on a draft of the incubator report for Taverna, due next week
at
http://wiki.apache.org/incubator
-language/tree/8904075e
Diff:
http://git-wip-us.apache.org/repos/asf/incubator-taverna-language/diff/8904075e
Branch: refs/heads/master
Commit: 8904075eaf465243e1cab1272230090ddae73303
Parents: bdf5bd3
Author: Stian Soiland-Reyes st...@apache.org
Authored: Thu Feb 26 23:13:22 2015 +
* and the
new taverna-maven-parent. Thus I ignored these as they would
not be mergeable across.
Example:
https://github.com/taverna/taverna3-command-line/commits/master
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this feature
enabled and wishes so, or if the feature is enabled but not working, please
contact infrastructure at infrastruct...@apache.org or file a JIRA ticket
with INFRA.
---
--
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Apache Taverna (incubating)
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-taverna-plugin-bioinformatics.git;a=tag;h=2111f135363bc7dad8858f258186486755150f2c
Now.. code! :-))
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are a pain to set up:
https://registry.hub.docker.com/u/cptactionhank/atlassian-confluence/
https://registry.hub.docker.com/u/cptactionhank/atlassian-jira/
On 23 February 2015 at 14:23, alaninmcr alanin...@googlemail.com wrote:
On 23/02/2015 13:53, Stian Soiland-Reyes wrote:
At this point only
.. but as I said in the long email - as a committer you should not use
the GitHub repositories, but the [https] repositories from apache.org
in
http://taverna.incubator.apache.org/download/code/
On 23 February 2015 at 13:30, Stian Soiland-Reyes st...@apache.org wrote:
Now! :)
Commits are good
On 23 February 2015 at 14:38, Stian Soiland-Reyes st...@apache.org wrote:
For the wikis I think the idea is to move the space
.. to move the space
http://dev.mygrid.org.uk/wiki/display/developer/
as is (but renamed to TAV). There are a few strange pages under
http://dev.mygrid.org.uk/wiki
I've started on a draft of the incubator report for Taverna, due next week
at
http://wiki.apache.org/incubator/March2015
Please amend/shorten/correct.
Tldr:
Three most important issues to address in the move towards graduation:
1. First Apache release
2. Finish infrastructue move
3. Growing
Agreed, we really need to focus on growing the community now.
Any suggestions from mentors on how we should go about that..?
On 26 Feb 2015 11:05, Marlon Pierce marpi...@iu.edu wrote:
I recommend you reverse the order of your issues.
On 2/26/15 2:34 AM, Stian Soiland-Reyes wrote:
I've
It would help the mentors a lot if you prefix your proposal title with
Apache Taverna as Apache receives quite a lot of applications! :)
(Thanks, Menaka!)
Looking forward to all those applications! Great community engagement so far!
--
Stian Soiland-Reyes
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should be a proper full name, not Johnny-C:
stain@biggie-utopic:~$ git config --global user.name Stian Soiland-Reyes
stain@biggie-utopic:~$ git config --global user.name
Stian Soiland-Reyes
(Remember the quotes!)
I've tried to keep such an ID for all Apache-related commits in the
incubator
15a13b30042c3d8ff3dcc2bfdf524e595ffd0f56
Author: Stian Soiland-Reyes st...@apache.org
Date: Mon Jan 12 21:23:55 2015 +
Apache headers
commit 0dcc39e5d646c24d37e9ffc783ef2942510101f2
Author: Stian Soiland-Reyes soiland-re...@cs.manchester.ac.uk
Date: Thu Dec 18 22:49:07 2014 -0600
scufl2-* - taverna
nicely.
Donal.
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The University of Manchester
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at 11:48, alaninmcr alanin...@googlemail.com wrote:
Hurray.
All issues assigned to Stian :)
Alan
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[
https://issues.apache.org/jira/browse/TAVERNA-730?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel
]
Stian Soiland-Reyes updated TAVERNA-730:
Description: Update specification at
http://taverna.incubator.apache.org
[
https://issues.apache.org/jira/browse/TAVERNA-812?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel
]
Stian Soiland-Reyes updated TAVERNA-812:
Fix Version/s: language 0.15.0
parent 1
Release Taverna
[
https://issues.apache.org/jira/browse/TAVERNA-787?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanelfocusedCommentId=14517104#comment-14517104
]
Stian Soiland-Reyes commented on TAVERNA-787:
-
Draft is at http
?
Cheers
Alan
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Stian Soiland-Reyes created TAVERNA-812:
---
Summary: Release Taverna Language 0.15.0-incubating
Key: TAVERNA-812
URL: https://issues.apache.org/jira/browse/TAVERNA-812
Project: Apache Taverna
the question people will ask is how do I
ask Apache INFRA?. Are the details needed on here
http://www.apache.org/dev/infra-contact
Cheers,
Ian
-Original Message-
From: Stian Soiland-Reyes [mailto:st...@apache.org]
Sent: 05 May 2015 15:12
To: dev@taverna.incubator.apache.org
Subject
for emergence and sustainable development.
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--
Stian Soiland-Reyes
Apache Taverna (incubating), Apache Commons RDF
.
LinkedIn
--
Stian Soiland-Reyes
Apache Taverna (incubating), Apache Commons RDF (incubating)
http://orcid.org/-0001-9842-9718
.
https://issues.apache.org/jira/servicedesk/customer/portal/1/INFRA-9602
https://issues.apache.org/jira/servicedesk/customer/portal/1/INFRA-9601
Cheers,
Ian
-Original Message-
From: Stian Soiland-Reyes [mailto:st...@apache.org]
Sent: 05 May 2015 15:27
To: dev
://www.bsc.es/disclaimer
--
Stian Soiland-Reyes
Apache Taverna (incubating), Apache Commons RDF (incubating)
http://orcid.org/-0001-9842-9718
?
Kind regards,
Dmitry
Alan
--
Stian Soiland-Reyes
Apache Taverna (incubating), Apache Commons RDF (incubating)
http://orcid.org/-0001-9842-9718
=alertpstrongWarning:/strong
As of 2015-01-29, the Taverna source code
...
]]
Andy
--
Stian Soiland-Reyes
Apache Taverna (incubating), Apache Commons RDF (incubating)
http://orcid.org/-0001-9842-9718
, Stian Soiland-Reyes wrote:
Thanks for investigating!
I don't think there's any reason to stick with the myGrid version,
probably there was no official Maven repository for ICEpdf before - so
feel free to upgrade.
I am however a bit reluctant to depending on a single-company
repository
Stian Soiland-Reyes created TAVERNA-825:
---
Summary: Release Candidate for taverna-maven-parent
Key: TAVERNA-825
URL: https://issues.apache.org/jira/browse/TAVERNA-825
Project: Apache Taverna
[
https://issues.apache.org/jira/browse/TAVERNA-812?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel
]
Stian Soiland-Reyes reassigned TAVERNA-812:
---
Assignee: Stian Soiland-Reyes
Release Taverna Language 0.15.0-incubating
Stian Soiland-Reyes created TAVERNA-826:
---
Summary: Release candidate for taverna-language
Key: TAVERNA-826
URL: https://issues.apache.org/jira/browse/TAVERNA-826
Project: Apache Taverna
Stian Soiland-Reyes created TAVERNA-828:
---
Summary: Release taverna-language to dist.apache and Maven repo
Key: TAVERNA-828
URL: https://issues.apache.org/jira/browse/TAVERNA-828
Project: Apache
Stian Soiland-Reyes created TAVERNA-829:
---
Summary: Create/update Download page
Key: TAVERNA-829
URL: https://issues.apache.org/jira/browse/TAVERNA-829
Project: Apache Taverna
Issue
Stian Soiland-Reyes created TAVERNA-833:
---
Summary: Update git tags
Key: TAVERNA-833
URL: https://issues.apache.org/jira/browse/TAVERNA-833
Project: Apache Taverna
Issue Type: Sub-task
[
https://issues.apache.org/jira/browse/TAVERNA-812?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanelfocusedCommentId=14580389#comment-14580389
]
Stian Soiland-Reyes commented on TAVERNA-812:
-
Yes - everything else
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